All issues
- 2024 Vol. 16
- 2023 Vol. 15
- 2022 Vol. 14
- 2021 Vol. 13
- 2020 Vol. 12
- 2019 Vol. 11
- 2018 Vol. 10
- 2017 Vol. 9
- 2016 Vol. 8
- 2015 Vol. 7
- 2014 Vol. 6
- 2013 Vol. 5
- 2012 Vol. 4
- 2011 Vol. 3
- 2010 Vol. 2
- 2009 Vol. 1
Modelling spatio-temporal dynamics of circadian rythms in Neurospora crassa
pdf (1711K)
/ Annotation
List of references:
- Delay-induced stochastic oscillations in gene regulation // PNAS. — 2005. — V. 102, no. 41. — P. 14593–14598. — DOI: 10.1073/pnas.0503858102. — ads: 2005PNAS..10214593B. , , , .
- Non-Marcovian processes in Gene Regulation // Noise in Complex Systems and Stochastic Dynamics III. — Proceeding of SPIE. — 2005. — V. 5845. — P. 210–219. — edited by Laszlo B.Kish, Katja Lindenberg, Zoltan Gingl. — DOI: 10.1117/12.609707. — ads: 2005SPIE.5845..210B. , , , .
- A synchronized quorum of genetic clocks // Nature. — 2010. — V. 423. — P. 326–330. — DOI: 10.1038/nature08753. — ads: 2010Natur.463..326D. , , , .
- Genetics and molecular analysis of circadian rhythms // Annu. Rev. Genet. — 1996. — V. 30. — P. 579–601. — DOI: 10.1146/annurev.genet.30.1.579. .
- Molecular bases for circadian clocks // Cell. — 1999. — V. 96, no. 2. — P. 271–290. — DOI: 10.1016/S0092-8674(00)80566-8. .
- Model for the Neurospora Circadian Clock // Biophys. J. — 2005. — V. 88, no. 4. — P. 2369–2383. — DOI: 10.1529/biophysj.104.053975. .
- White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter // Science. — 2002. — V. 297. — P. 815–819. — DOI: 10.1126/science.1073681. — ads: 2002Sci...297..815F. , , , .
- Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY // PNAS. — 2003. — V. 100, no. 10. — P. 5914–5919. — DOI: 10.1073/pnas.1030057100. — ads: 2003PNAS..100.5914F. , , .
- The genome sequence of the filamentous fungus Neurospora crassa // Nature. — 2003. — V. 422. — P. 859–868. — DOI: 10.1038/nature01554. — ads: 2003Natur.422..859G. , , , et al.
- Exact stochastic simulation of coupled chemical reactions // J. Phys. Chem. — 1977. — V. 81. — P. 2340–2361. — DOI: 10.1021/j100540a008. .
- Translating the noise // Nature Genetics. — 2002. — V. 31. — P. 13–14. — DOI: 10.1038/ng0502-13. , .
- FWD1-mediated degradation of FRQ in Neurospora establishes a conserved mechanism for circadian clock regulation // Embo. J. — 2003. — V. 22, no. 17. — P. 4421–4430. — DOI: 10.1093/emboj/cdg425. , , , , , .
- Circadian rhythms in microorganisms: New complexities // Annu. Rev. Microbiol. — 2004. — V. 58. — P. 489–519. — DOI: 10.1146/annurev.micro.58.030603.123744. , .
- Circadian rhythms in Neurospora crassa: biochemistry and genetics // Crit. Rev. Microbiol. — 1990. — V. 17, no. 5. — P. 365–416. — DOI: 10.3109/10408419009114762. , , .
- Interconnected feedback loops in the Neurospora circadian system // Science. — 2000. — V. 289. — P. 107–110. — DOI: 10.1126/science.289.5476.107. — ads: 2000Sci...289..107L. , , .
- Delay model of the circadian pace maker // J. Theor. Biol. — 2000. — V. 204. — P. 565–573. — DOI: 10.1006/jtbi.2000.2038. , , .
- Phosphorylation of the Neurospora clock protein FREQUENCY determines its degradation rate and strongly influences the period length of the circadian clock // PNAS. — 2000. — V. 97, no. 1. — P. 234–239. — DOI: 10.1073/pnas.97.1.234. — ads: 2000PNAS...97..234L. , , .
- Genetic and molecular analysis of circadian rhythms in Neurospora // Annu. Rev. Physiol. — 2001. — V. 63. — P. 757–794. — DOI: 10.1146/annurev.physiol.63.1.757. , .
- Neurospora crassa genome. — Broad Institute. — http://www.broadinstitute.org/annotation/genome/neurospora/GenomesIndex.html.
- A biological clock in Neurospora // Nature. — 1959. — V. 184. — P. 169–170. — DOI: 10.1038/184169a0. — ads: 1959Natur.184..169P. , , , .
- Temporal organization: reflections of a Darwinian clock-watcher // Annu. Rev. Physiol. — 1993. — V. 55. — P. 16–54. — DOI: 10.1146/annurev.ph.55.030193.000313. .
- Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm // J. Chem. Phys. — 2003. — V. 118. — P. 4999–5010. — DOI: 10.1063/1.1545446. — ads: 2003JChPh.118.4999R. , .
- A mathematical model for the intracellular circadian rhythm generator // J. Neurosci. — 1999. — V. 19. — P. 40–47. — DOI: 10.1523/JNEUROSCI.19-01-00040.1999. , , , .
- Modeling circadian oscillations with interlocking positive and negative feedback loops // J. Neurosci. — 2001. — V. 21, no. 17. — P. 6644–6656. — DOI: 10.1523/JNEUROSCI.21-17-06644.2001. , , .
- Reduced models of the circadian oscillators in Neurospora crassa and Drosophila melanogaster illustrate mechanistic similarities // OMICS. — 2003. — V. 7, no. 4. — P. 337–354. — DOI: 10.1089/153623103322637661. , , .
- A two variable delay model for the circadian rhythm of Neurospora crassa // J. Theor. Biol. — 2004. — V. 231. — P. 23–38. — DOI: 10.1016/j.jtbi.2004.04.006. — MathSciNet: MR2107548. , .
- Intrinsic and Extrinsic contributions to stochasticity in gene expression // PNAS. — 2002. — V. 99. — P. 12795–12800. — DOI: 10.1073/pnas.162041399. — ads: 2002PNAS...9912795S. , , .
- Circadian rhythms, definition and general characterization / The Molecular Basis of Circadian Rhythms. — Berlin: Dahlem Konferenzen, 1976. — P. 77–83. — edited J. W. Hastings and H.-G. Schweiger. .
- Действие стрессоров на дифференциальную экспрессию генов в ходе развития Neurospora crassa // Успехи биологической химии. — 2000. — Т. 40. — С. 85–152. , .
Indexed in Scopus
Full-text version of the journal is also available on the web site of the scientific electronic library eLIBRARY.RU
The journal is included in the Russian Science Citation Index
The journal is included in the RSCI
International Interdisciplinary Conference "Mathematics. Computing. Education"
Copyright © 2009–2024 Institute of Computer Science