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Quantile shape measures for heavy-tailed distributions
Computer Research and Modeling, 2024, v. 16, no. 5, pp. 1041-1077Currently, journal papers contain numerous examples of the use of heavy-tailed distributions for applied research on various complex systems. Models of extreme data are usually limited to a small set of distribution shapes that in this field of applied research historically been used. It is possible to increase the composition of the set of probability distributions shapes through comparing the measures of the distribution shapes and choosing the most suitable implementations. The example of a beta distribution of the second kind shown that the lack of definability of the moments of heavy-tailed implementations of the beta family of distributions limits the applicability of the existing classical methods of moments for studying the distributions shapes when are characterized heavy tails. For this reason, the development of new methods for comparing distributions based on quantile shape measures free from the restrictions on the shape parameters remains relevant study the possibility of constructing a space of quantile measures of shapes for comparing distributions with heavy tails. The operation purpose consists in computer research of creation possibility of space of the quantile’s measures for the comparing of distributions property with heavy tails. On the basis of computer simulation there the distributions implementations in measures space of shapes were been shown. Mapping distributions in space only of the parametrical measures of shapes has shown that the imposition of regions for heavy tails distribution made impossible compare the shape of distributions belonging to different type in the space of quantile measures of skewness and kurtosis. It is well known that shape information measures such as entropy and entropy uncertainty interval contain additional information about the shape measure of heavy-tailed distributions. In this paper, a quantile entropy coefficient is proposed as an additional independent measure of shape, which is based on the ratio of entropy and quantile uncertainty intervals. Also estimates of quantile entropy coefficients are obtained for a number of well-known heavy-tailed distributions. The possibility of comparing the distributions shapes with realizations of the beta distribution of the second kind is illustrated by the example of the lognormal distribution and the Pareto distribution. Due to mapping the position of stable distributions in the three-dimensional space of quantile measures of shapes estimate made it possible the shape parameters to of the beta distribution of the second kind, for which shape is closest to the Lévy shape. From the paper material it follows that the display of distributions in the three-dimensional space of quantile measures of the forms of skewness, kurtosis and entropy coefficient significantly expands the possibility of comparing the forms for distributions with heavy tails.
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Finite difference schemes for linear advection equation solving under generalized approximation condition
Computer Research and Modeling, 2018, v. 10, no. 2, pp. 181-193Views (last year): 27.A set of implicit difference schemes on the five-pointwise stensil is under construction. The analysis of properties of difference schemes is carried out in a space of undetermined coefficients. The spaces were introduced for the first time by A. S. Kholodov. Usually for properties of difference schemes investigation the problem of the linear programming was constructed. The coefficient at the main term of a discrepancy was considered as the target function. The optimization task with inequalities type restrictions was considered for construction of the monotonic difference schemes. The limitation of such an approach becomes clear taking into account that approximation of the difference scheme is defined only on the classical (smooth) solutions of partial differential equations.
The functional which minimum will be found put in compliance to the difference scheme. The functional must be the linear on the difference schemes coefficients. It is possible that the functional depends on net function – the solution of a difference task or a grid projection of the differential problem solution. If the initial terms of the functional expansion in a Taylor series on grid parameters are equal to conditions of classical approximation, we will call that the functional will be the generalized condition of approximation. It is shown that such functionals exist. For the simple linear partial differential equation with constant coefficients construction of the functional is possible also for the generalized (non-smooth) solution of a differential problem.
Families of functionals both for smooth solutions of an initial differential problem and for the generalized solution are constructed. The new difference schemes based on the analysis of the functionals by linear programming methods are constructed. At the same time the research of couple of self-dual problems of the linear programming is used. The optimum monotonic difference scheme possessing the first order of approximation on the smooth solution of differential problem is found. The possibility of application of the new schemes for creation of hybrid difference methods of the raised approximation order on smooth solutions is discussed.
The example of numerical implementation of the simplest difference scheme with the generalized approximation is given.
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Modified Gauss–Newton method for solving a smooth system of nonlinear equations
Computer Research and Modeling, 2021, v. 13, no. 4, pp. 697-723In this paper, we introduce a new version of Gauss–Newton method for solving a system of nonlinear equations based on ideas of the residual upper bound for a system of nonlinear equations and a quadratic regularization term. The introduced Gauss–Newton method in practice virtually forms the whole parameterized family of the methods solving systems of nonlinear equations and regression problems. The developed family of Gauss–Newton methods completely consists of iterative methods with generalization for cases of non-euclidean normed spaces, including special forms of Levenberg–Marquardt algorithms. The developed methods use the local model based on a parameterized proximal mapping allowing us to use an inexact oracle of «black–box» form with restrictions for the computational precision and computational complexity. We perform an efficiency analysis including global and local convergence for the developed family of methods with an arbitrary oracle in terms of iteration complexity, precision and complexity of both local model and oracle, problem dimensionality. We present global sublinear convergence rates for methods of the proposed family for solving a system of nonlinear equations, consisting of Lipschitz smooth functions. We prove local superlinear convergence under extra natural non-degeneracy assumptions for system of nonlinear functions. We prove both local and global linear convergence for a system of nonlinear equations under Polyak–Lojasiewicz condition for proposed Gauss– Newton methods. Besides theoretical justifications of methods we also consider practical implementation issues. In particular, for conducted experiments we present effective computational schemes for the exact oracle regarding to the dimensionality of a problem. The proposed family of methods unites several existing and frequent in practice Gauss–Newton method modifications, allowing us to construct a flexible and convenient method implementable using standard convex optimization and computational linear algebra techniques.
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Stoichiometric synthesis of metabolic pathways
Computer Research and Modeling, 2015, v. 7, no. 6, pp. 1241-1267Views (last year): 6. Citations: 3 (RSCI).A vector-matrix approach to the theoretical design of metabolic pathways converting chemical compounds, viz., preset substrates, into desirable products is described. It is a mathematical basis for computer–aided generation of alternative biochemical reaction sets executing the given substrate–product conversion. The pathways are retrieved from the used database of biochemical reactions and utilize the reaction stoichiometry and restrictions based on the irreversibility of a part of them. Particular attention is paid to the analysis of restriction interrelations. It is shown that the number of restrictions can be notably reduced due to the existence of families of parallel restricting planes in the space of reaction flows. Coinciding planes of contradirectional restrictions result in the existence of fixed reaction flow values. The problem of exclusion of so called futile cycles is also considered. Utilization of these factors allows essential lowering of the problem complexity and necessary computational resources. An example of alternative biochemical pathway computation for conversion of glucose and glycerol into succinic acid is given. It is found that for a preset “substrate–product” pair many pathways have the same high-energy bond balance.
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