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Running applications on a hybrid cluster
Computer Research and Modeling, 2015, v. 7, no. 3, pp. 475-483Views (last year): 4.A hybrid cluster implies the use of computational devices with radically different architectures. Usually, these are conventional CPU architecture (e.g. x86_64) and GPU architecture (e. g. NVIDIA CUDA). Creating and exploiting such a cluster requires some experience: in order to harness all computational power of the described system and get substantial speedup for computational tasks many factors should be taken into account. These factors consist of hardware characteristics (e.g. network infrastructure, a type of data storage, GPU architecture) as well as software stack (e.g. MPI implementation, GPGPU libraries). So, in order to run scientific applications GPU capabilities, software features, task size and other factors should be considered.
This report discusses opportunities and problems of hybrid computations. Some statistics from tests programs and applications runs will be demonstrated. The main focus of interest is open source applications (e. g. OpenFOAM) that support GPGPU (with some parts rewritten to use GPGPU directly or by replacing libraries).
There are several approaches to organize heterogeneous computations for different GPU architectures out of which CUDA library and OpenCL framework are compared. CUDA library is becoming quite typical for hybrid systems with NVIDIA cards, but OpenCL offers portability opportunities which can be a determinant factor when choosing framework for development. We also put emphasis on multi-GPU systems that are often used to build hybrid clusters. Calculations were performed on a hybrid cluster of SPbU computing center.
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Views (last year): 3.
Storage is the essential and expensive part of cloud computation both from the point of view of network requirements and data access organization. So the choice of storage architecture can be crucial for any application. In this article we can look at the types of cloud architectures for data processing and data storage based on the proven technology of enterprise storage. The advantage of cloud computing is the ability to virtualize and share resources among different applications for better server utilization. We are discussing and evaluating distributed data processing, database architectures for cloud computing and database query in the local network and for real time conditions.
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GridFTP frontend with redirection for DMlite
Computer Research and Modeling, 2015, v. 7, no. 3, pp. 543-547Views (last year): 1.One of the most widely used storage solutions in WLCG is a Disk Pool Manager (DPM) developed and supported by SDC/ID group at CERN. Recently DPM went through a massive overhaul to address scalability and extensibility issues of the old code.
New system was called DMLite. Unlike the old DPM that was based on daemons, DMLite is arranged as a library that can be loaded directly by an application. This approach greatly improves performance and transaction rate by avoiding unnecessary inter-process communication via network as well as threading bottlenecks.
DMLite has a modular architecture with its core library providing only the very basic functionality. Backends (storage engines) and frontends (data access protocols) are implemented as plug-in modules. Doubtlessly DMLite wouldn't be able to completely replace DPM without GridFTP as it is used for most of the data transfers in WLCG.
In DPM GridFTP support was implemented in a Data Storage Interface (DSI) module for Globus’ GridFTP server. In DMLite an effort was made to rewrite a GridFTP module from scratch in order to take advantage of new DMLite features and also implement new functionality. The most important improvement over the old version is a redirection capability.
With old GridFTP frontend a client needed to contact SRM on the head node in order to obtain a transfer URL (TURL) before reading or writing a file. With new GridFTP frontend this is no longer necessary: a client may connect directly to the GridFTP server on the head node and perform file I/O using only logical file names (LFNs). Data channel is then automatically redirected to a proper disk node.
This renders the most often used part of SRM unnecessary, simplifies file access and improves performance. It also makes DMLite a more appealing choice for non-LHC VOs that were never much interested in SRM.
With new GridFTP frontend it's also possible to access data on various DMLite-supported backends like HDFS, S3 and legacy DPM.
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International Interdisciplinary Conference "Mathematics. Computing. Education"