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Direct multiplicative methods for sparse matrices. Unbalanced linear systems.
Computer Research and Modeling, 2016, v. 8, no. 6, pp. 833-860Views (last year): 20. Citations: 2 (RSCI).Small practical value of many numerical methods for solving single-ended systems of linear equations with ill-conditioned matrices due to the fact that these methods in the practice behave quite differently than in the case of precise calculations. Historically, sustainability is not enough attention was given, unlike in numerical algebra ‘medium-sized’, and emphasis is given to solving the problems of maximal order in data capabilities of the computer, including the expense of some loss of accuracy. Therefore, the main objects of study is the most appropriate storage of information contained in the sparse matrix; maintaining the highest degree of rarefaction at all stages of the computational process. Thus, the development of efficient numerical methods for solving unstable systems refers to the actual problems of computational mathematics.
In this paper, the approach to the construction of numerically stable direct multiplier methods for solving systems of linear equations, taking into account sparseness of matrices, presented in packaged form. The advantage of the approach consists in minimization of filling the main lines of the multipliers without compromising accuracy of the results and changes in the position of the next processed row of the matrix are made that allows you to use static data storage formats. The storage format of sparse matrices has been studied and the advantage of this format consists in possibility of parallel execution any matrix operations without unboxing, which significantly reduces the execution time and memory footprint.
Direct multiplier methods for solving systems of linear equations are best suited for solving problems of large size on a computer — sparse matrix systems allow you to get multipliers, the main row of which is also sparse, and the operation of multiplication of a vector-row of the multiplier according to the complexity proportional to the number of nonzero elements of this multiplier.
As a direct continuation of this work is proposed in the basis for constructing a direct multiplier algorithm of linear programming to put a modification of the direct multiplier algorithm for solving systems of linear equations based on integration of technique of linear programming for methods to select the host item. Direct multiplicative methods of linear programming are best suited for the construction of a direct multiplicative algorithm set the direction of descent Newton methods in unconstrained optimization by integrating one of the existing design techniques significantly positive definite matrix of the second derivatives.
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FlowVision: Industrial computational fluid dynamics
Computer Research and Modeling, 2017, v. 9, no. 1, pp. 5-20Views (last year): 30. Citations: 8 (RSCI).The work submits new release of the FlowVision software designed for automation of engineering calculations in computational fluid dynamics: FlowVision 3.09.05. The FlowVision software is used for solving different industrial problems. Its popularity is based on the capability to solve complex non-tradition problems involving different physical processes. The paradigm of complete automation of labor-intensive and time-taking processes like grid generation makes FlowVision attractive for many engineers. FlowVision is completely developer-independent software. It includes an advanced graphical interface, the system for specifying a computational project as well as the system for flow visualization on planes, on curvilinear surfaces and in volume by means of different methods: plots, color contours, iso-lines, iso-surfaces, vector fields. Besides that, FlowVision provides tools for calculation of integral characteristics on surfaces and in volumetric regions.
The software is based on the finite-volume approach to approximation of the partial differential equations describing fluid motion and accompanying physical processes. It provides explicit and implicit methods for time integration of these equations. The software includes automated generator of unstructured grid with capability of its local dynamic adaptation. The solver involves two-level parallelism which allows calculations on computers with distributed and shared memory (coexisting in the same hardware). FlowVision incorporates a wide spectrum of physical models: different turbulence models, models for mass transfer accounting for chemical reactions and radioactive decay, several combustion models, a dispersed phase model, an electro-hydrodynamic model, an original VOF model for tracking moving interfaces. It should be noted that turbulence can be simulated within URANS, LES, and ILES approaches. FlowVision simulates fluid motion with velocities corresponding to all possible flow regimes: from incompressible to hypersonic. This is achieved by using an original all-speed velocity-pressure split algorithm for integration of the Navier-Stokes equations.
FlowVision enables solving multi-physic problems with use of different modeling tools. For instance, one can simulate multi-phase flows with use of the VOF method, flows past bodies moving across a stationary grid (within Euler approach), flows in rotary machines with use of the technology of sliding grid. Besides that, the software solves fluid-structure interaction problems using the technology of two-way coupling of FlowVision with finite-element codes. Two examples of solving challenging problems in the FlowVision software are demonstrated in the given article. The first one is splashdown of a spacecraft after deceleration by means of jet engines. This problem is characterized by presence of moving bodies and contact surface between the air and the water in the computational domain. The supersonic jets interact with the air-water interphase. The second problem is simulation of the work of a human heart with artificial and natural valves designed on the basis of tomographic investigations with use of a finite-element model of the heart. This problem is characterized by two-way coupling between the “liquid” computational domain and the finite-element model of the hart muscles.
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In memory of Rem Georgievich Barantsev
Computer Research and Modeling, 2020, v. 12, no. 5, pp. 943-954 -
In memory of Alexey Vladimirovich Borisov 1965–2021
Computer Research and Modeling, 2021, v. 13, no. 1, pp. 9-14On January 24, a famous scientist, doctor of physical and mathematical sciences, professor and laureate of the Prize of S.V. Kowalevsky Alexey Vladimirovich Borisov passed away. Alexey Vladimirovich was born and raised in Moscow. After graduating from high school, he entered the Faculty of Special Mechanical Engineering of the Bauman Moscow State Technical University. Already during his studies, Alexey Vladimirovich attends a scientific seminar at the Faculty of Mechanics and Mathematics of the Lomnosov Moscow State University, which largely determines the direction of his future research. After defending his Ph.D. thesis, Alexey Vladimirovich creates a scientific group in Izhevsk, his subsequent scientific biography is very wide: Yekaterinburg, Cheboksary, Innopolis, Dolgoprudny, Moscow. Borisov founds and heads the series of scientific journals Regular and Chaotic Dynamics, Nonlinear Dynamics, is the editor-in-chief in the journals Bulletin of Udmurt University, Computer research and modeling. The scientific heritage of A.V. Borisov is extensive, the list of publications is more than 200 works, more than 170 of which have been published in journals indexed by international databases Scopus and Web of Science. More than 10 monographs belong to him.
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Synthesis of the structure of organised systems as central problem of evolutionary cybernetics
Computer Research and Modeling, 2023, v. 15, no. 5, pp. 1103-1124The article provides approaches to evolutionary modelling of synthesis of organised systems and analyses methodological problems of evolutionary computations of this kind. Based on the analysis of works on evolutionary cybernetics, evolutionary theory, systems theory and synergetics, we conclude that there are open problems in formalising the synthesis of organised systems and modelling their evolution. The article emphasises that the theoretical basis for the practice of evolutionary modelling is the principles of the modern synthetic theory of evolution. Our software project uses a virtual computing environment for machine synthesis of problem solving algorithms. In the process of modelling, we obtained the results on the basis of which we conclude that there are a number of conditions that fundamentally limit the applicability of genetic programming methods in the tasks of synthesis of functional structures. The main limitations are the need for the fitness function to track the step-by-step approach to the solution of the problem and the inapplicability of this approach to the problems of synthesis of hierarchically organised systems. We note that the results obtained in the practice of evolutionary modelling in general for the whole time of its existence, confirm the conclusion the possibilities of genetic programming are fundamentally limited in solving problems of synthesizing the structure of organized systems. As sources of fundamental difficulties for machine synthesis of system structures the article points out the absence of directions for gradient descent in structural synthesis and the absence of regularity of random appearance of new organised structures. The considered problems are relevant for the theory of biological evolution. The article substantiates the statement about the biological specificity of practically possible ways of synthesis of the structure of organised systems. As a theoretical interpretation of the discussed problem, we propose to consider the system-evolutionary concept of P.K.Anokhin. The process of synthesis of functional structures in this context is an adaptive response of organisms to external conditions based on their ability to integrative synthesis of memory, needs and information about current conditions. The results of actual studies are in favour of this interpretation. We note that the physical basis of biological integrativity may be related to the phenomena of non-locality and non-separability characteristic of quantum systems. The problems considered in this paper are closely related to the problem of creating strong artificial intelligence.
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Bicompact schemes for the HOLO algorithm for joint solution of the transport equation and the energy equation
Computer Research and Modeling, 2023, v. 15, no. 6, pp. 1429-1448The numerical solving of the system of high-temperature radiative gas dynamics (HTRGD) equations is a computationally laborious task, since the interaction of radiation with matter is nonlinear and non-local. The radiation absorption coefficients depend on temperature, and the temperature field is determined by both gas-dynamic processes and radiation transport. The method of splitting into physical processes is usually used to solve the HTRGD system, one of the blocks consists of a joint solving of the radiative transport equation and the energy balance equation of matter under known pressure and temperature fields. Usually difference schemes with orders of convergence no higher than the second are used to solve this block. Due to computer memory limitations it is necessary to use not too detailed grids to solve complex technical problems. This increases the requirements for the order of approximation of difference schemes. In this work, bicompact schemes of a high order of approximation for the algorithm for the joint solution of the radiative transport equation and the energy balance equation are implemented for the first time. The proposed method can be applied to solve a wide range of practical problems, as it has high accuracy and it is suitable for solving problems with coefficient discontinuities. The non-linearity of the problem and the use of an implicit scheme lead to an iterative process that may slowly converge. In this paper, we use a multiplicative HOLO algorithm named the quasi-diffusion method by V.Ya.Goldin. The key idea of HOLO algorithms is the joint solving of high order (HO) and low order (LO) equations. The high-order equation (HO) is the radiative transport equation solved in the energy multigroup approximation, the system of quasi-diffusion equations in the multigroup approximation (LO1) is obtained by averaging HO equations over the angular variable. The next step is averaging over energy, resulting in an effective one-group system of quasi-diffusion equations (LO2), which is solved jointly with the energy equation. The solutions obtained at each stage of the HOLO algorithm are closely related that ultimately leads to an acceleration of the convergence of the iterative process. Difference schemes constructed by the method of lines within one cell are proposed for each of the stages of the HOLO algorithm. The schemes have the fourth order of approximation in space and the third order of approximation in time. Schemes for the transport equation were developed by B.V. Rogov and his colleagues, the schemes for the LO1 and LO2 equations were developed by the authors. An analytical test is constructed to demonstrate the declared orders of convergence. Various options for setting boundary conditions are considered and their influence on the order of convergence in time and space is studied.
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Application of Turbulence Problem Solver (TPS) software complex for numerical modeling of the interaction between laser radiation and metals
Computer Research and Modeling, 2018, v. 10, no. 5, pp. 619-630Views (last year): 15.The work is dedicated to the use of the software package Turbulence Problem Solver (TPS) for numerical simulation of a wide range of laser problems. The capabilities of the package are demonstrated by the example of numerical simulation of the interaction of femtosecond laser pulses with thin metal bonds. The software package TPS developed by the authors is intended for numerical solution of hyperbolic systems of differential equations on multiprocessor computing systems with distributed memory. The package is a modern and expandable software product. The architecture of the package gives the researcher the opportunity to model different physical processes in a uniform way, using different numerical methods and program blocks containing specific initial conditions, boundary conditions and source terms for each problem. The package provides the the opportunity to expand the functionality of the package by adding new classes of problems, computational methods, initial and boundary conditions, as well as equations of state of matter. The numerical methods implemented in the software package were tested on test problems in one-dimensional, two-dimensional and three-dimensional geometry, which included Riemann's problems on the decay of an arbitrary discontinuity with different configurations of the exact solution.
Thin films on substrates are an important class of targets for nanomodification of surfaces in plasmonics or sensor applications. Many articles are devoted to this subject. Most of them, however, focus on the dynamics of the film itself, paying little attention to the substrate, considering it simply as an object that absorbs the first compression wave and does not affect the surface structures that arise as a result of irradiation. The paper describes in detail a computational experiment on the numerical simulation of the interaction of a single ultrashort laser pulse with a gold film deposited on a thick glass substrate. The uniform rectangular grid and the first-order Godunov numerical method were used. The presented results of calculations allowed to confirm the theory of the shock-wave mechanism of holes formation in the metal under femtosecond laser action for the case of a thin gold film with a thickness of about 50 nm on a thick glass substrate.
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Comparison of the results of using various evolution algorithms to solve the problem of route optimization of unmanned vehicles
Computer Research and Modeling, 2022, v. 14, no. 1, pp. 45-62In this paper, a comparative analysis of the exact and heuristic algorithms presented by the method of branches and boundaries, genetic and ant algorithms, respectively, is carried out to find the optimal solution to the traveling salesman problem using the example of a courier robot. The purpose of the work is to determine the running time, the length of the obtained route and the amount of memory required for the program to work, using the method of branches and boundaries and evolutionary heuristic algorithms. Also, the most appropriate of the listed methods for use in the specified conditions is determined. This article uses the materials of the conducted research, implemented in the format of a computer program, the program code for which is implemented in Python. In the course of the study, a number of criteria for the applicability of algorithms were selected (the time of the program, the length of the constructed route and the amount of memory necessary for the program to work), the results of the algorithms were obtained under specified conditions and conclusions were drawn about the degree of expediency of using one or another algorithm in various specified conditions of the courier robot. During the study, it turned out that for a small number of points $\leqslant10$, the method of branches and boundaries is the most preferable, since it finds the optimal solution faster. However, when calculating the route by this method, provided that the points increase by more than 10, the operating time increases exponentially. In this case, more effective results are obtained by a heuristic approach using a genetic and ant algorithm. At the same time, the ant algorithm is distinguished by solutions that are closest to the reference ones and with an increase of more than 16 points. Its relative disadvantage is the greatest resource intensity among the considered algorithms. The genetic algorithm gives similar results, but after increasing the points more than 16, the length of the found route increases relative to the reference one. The advantage of the genetic algorithm is its lower resource intensity compared to other algorithms.
The practical significance of this article lies in the potential possibility of using the results obtained for the optimal solution of logistics problems by an automated system in various fields: warehouse logistics, transport logistics, «last mile» logistics, etc.
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Algorithm of simple graph exploration by a collective of agents
Computer Research and Modeling, 2021, v. 13, no. 1, pp. 33-45The study presented in the paper is devoted to the problem of finite graph exploration using a collective of agents. Finite non-oriented graphs without loops and multiple edges are considered in this paper. The collective of agents consists of two agents-researchers, who have a finite memory independent of the number of nodes of the graph studied by them and use two colors each (three colors are used in the aggregate) and one agentexperimental, who has a finite, unlimitedly growing internal memory. Agents-researches can simultaneously traverse the graph, read and change labels of graph elements, and also transmit the necessary information to a third agent — the agent-experimenter. An agent-experimenter is a non-moving agent in whose memory the result of the functioning of agents-researchers at each step is recorded and, also, a representation of the investigated graph (initially unknown to agents) is gradually built up with a list of edges and a list of nodes.
The work includes detail describes of the operating modes of agents-researchers with an indication of the priority of their activation. The commands exchanged between agents-researchers and an agent-experimenter during the execution of procedures are considered. Problematic situations arising in the work of agentsresearchers are also studied in detail, for example, staining a white vertex, when two agents simultaneously fall into the same node, or marking and examining the isthmus (edges connecting subgraphs examined by different agents-researchers), etc. The full algorithm of the agent-experimenter is presented with a detailed description of the processing of messages received from agents-researchers, on the basis of which a representation of the studied graph is built. In addition, a complete analysis of the time, space, and communication complexities of the constructed algorithm was performed.
The presented graph exploration algorithm has a quadratic (with respect to the number of nodes of the studied graph) time complexity, quadratic space complexity, and quadratic communication complexity. The graph exploration algorithm is based on the depth-first traversal method.
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Evaluation of the scalability property of the program for the simulation of atmospheric chemical transport by means of the simulator gem5
Computer Research and Modeling, 2020, v. 12, no. 4, pp. 773-794In this work we have developed a new efficient program for the numerical simulation of 3D global chemical transport on an adaptive finite-difference grid which allows us to concentrate grid points in the regions where flow variables sharply change and coarsen the grid in the regions of their smooth behavior, which significantly minimizes the grid size. We represent the adaptive grid with a combination of several dynamic (tree, linked list) and static (array) data structures. The dynamic data structures are used for a grid reconstruction, and the calculations of the flow variables are based on the static data structures. The introduction of the static data structures allows us to speed up the program by a factor of 2 in comparison with the conventional approach to the grid representation with only dynamic data structures.
We wrote and tested our program on a computer with 6 CPU cores. Using the computer microarchitecture simulator gem5, we estimated the scalability property of the program on a significantly greater number of cores (up to 32), using several models of a computer system with the design “computational cores – cache – main memory”. It has been shown that the microarchitecture of a computer system has a significant impact on the scalability property, i.e. the same program demonstrates different efficiency on different computer microarchitectures. For example, we have a speedup of 14.2 on a processor with 32 cores and 2 cache levels, but we have a speedup of 22.2 on a processor with 32 cores and 3 cache levels. The execution time of a program on a computer model in gem5 is 104–105 times greater than the execution time of the same program on a real computer and equals 1.5 hours for the most complex model.
Also in this work we describe how to configure gem5 and how to perform simulations with gem5 in the most optimal way.
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