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• Innopolis University - Head of the Laboratory of Data Analysis and Bioinformatics
• ul. Universitetskaya 1, Innopolis, 420500, Russia
• https://innopolis.university/

Yaroslav A. Kholodov graduated from MIPT in 1993. He pursued postgraduate studies at MIPT from 1993 to 1996. He was employed by the company Beeline from 1996 to 1999. From 1999 to 2001 he pursued postgraduate studies at the Rochester University, USA. From 2001 on he was a senior teacher at the Department of Computational Mathematics of MIPT and from 2007 on an associate professor. He taught courses to undergraduate students in computational mathematics, nonlinear computational processes, and numerical modeling of the dynamics of traffic flows. The focus of his research activities is on intelligent data analysis, the modeling of protein interactions using bioinformatics and the modeling of road traffic using algorithms of adaptive control.

Yaroslav A. Kholodov is the author of more than 50 scientific publications in peer-reviewed journals and the author of 17 software programs for which certificates of state registration have been issued. He reviews papers for the journals “Mathematical Modeling” and “Computer Research and Modeling” and the co-author of 3 textbooks and one book. He is head of the Laboratory of Data Analysis and Bioinformatics at the Innopolis University.

Since 2008, according to the decision of the academic council of the Faculty of Control and Applied Mathematics at MIPT, he has been an academic adviser of postgraduate students.

Since then, six of them received a PhD in physics and mathematics under his guidance in the special field "Mathematical Modeling, Numerical Methods and Software Complexes".

Yaroslav A.Kholodov is the supervisor of the RFBR project "Development of Algorithms for Modeling the Dynamics of Traffic Flows for Optimal Routing of Traffic Using High-Performance Computational Technologies", No. 10-07-00620-а (2010-2012);

Also, he is the supervisor of the Federal target program “Scientific and Scientific-Pedagogical Personnel of Innovative Russia” within the framework of implementation of project No. 1.2.2 Scientific Research by Research groups under Guidance of Candidates of Science. “Development of High-Performance Computational Software Complex for Modeling the Interaction of Protein Structures”, No. 14.A18.21.18719 (2011-2012);

Supervisor of the RFBR project "Modeling and Adaptive Control of the Dynamics of Traffic Flows under Conditions of a Large Megalopolis", No. 14-01-00609-а (2014-2016); Supervisor of the RSF project “Fundamental Problems of Computational Models in Graphs and their Applications for Traffic Flows, Blood-Vascular and Respiratory Systems, Ventilation Systems and Other Network Structures", No. 14-11-00877 (2017-2018);

Supervisor of the RFBR project “Development of Algorithms for the Study of Binding of the major histocompatibility complex of class 1 with a peptide", No. 19-37-90135 (2019-2021).

Associate editor.

1. Kazorin V.I., Kholodov Y.A. Framework sumo-atclib for adaptive traffic control modeling, Computer Research and Modeling, 2024, vol. 16, no. 1, pp. 69-78
2. Morozov I.I., Gasnikov A.V., Tarasov V.N., Kholodov Y.A., Kholodov A.S. Numerical study of traffic flows by the hydrodynamic models, Computer Research and Modeling, 2011, vol. 3, no. 4, pp. 389-412
3. Grebenkin I.V., Alekseenko A.E., Gaivoronskiy N.A., Ignatov M.G., Kazennov A.M., Kozakov D.V., Kulagin A.P., Kholodov Y.A. Ensemble building and statistical mechanics methods for MHC-peptide binding prediction, Computer Research and Modeling, 2020, vol. 12, no. 6, pp. 1383-1395
4. Kholodov Y.A. Development of network computational models for the study of nonlinear wave processes on graphs, Computer Research and Modeling, 2019, vol. 11, no. 5, pp. 777-814
5. Prokoptsev N.G., Alekseenko A.E., Kholodov Y.A. Traffic flow speed prediction on transportation graph with convolutional neural networks, Computer Research and Modeling, 2018, vol. 10, no. 3, pp. 359-367
6. Verentsov S.I., Magerramov E.A., Vinogradov V.A., Gizatullin R.I., Alekseenko A.E., Kholodov Y.A. Bayesian localization for autonomous vehicle using sensor fusion and traffic signs, Computer Research and Modeling, 2018, vol. 10, no. 3, pp. 295-303
7. Kholodov Y.A., Alekseenko A.E., Kholodov A.S., Vasilev M.O., Mishin V.D. Development, calibration and verification of mathematical model for multilane urban road traffic flow. Part II, Computer Research and Modeling, 2015, vol. 7, no. 6, pp. 1205-1219
8. Alekseenko A.E., Kholodov Y.A., Kholodov A.S., Goreva A.I., Vasilev M.O., Chekhovich Y.V., Mishin V.D., Starozhilets V.M. Development, calibration and verification of mathematical model for multilane urban road traffic flow. Part I, Computer Research and Modeling, 2015, vol. 7, no. 6, pp. 1185-1203
9. Kholodov Y.A., Alekseenko A.E., Vasilev M.O., Kholodov A.S. Developing the mathematical model of road junction by the hydrodynamic approach, Computer Research and Modeling, 2014, vol. 6, no. 4, pp. 503-522
10. Zhmurov A.A., Alekseenko A.E., Barsegov V.A., Kononova O.G., Kholodov Y.A. Phase transition from α-helices to β-sheets in supercoils of fibrillar proteins, Computer Research and Modeling, 2013, vol. 5, no. 4, pp. 705-725
11. Trifonov S.V., Kholodov Y.A. Study and optimization of wireless sensor network based on ZigBee protocol, Computer Research and Modeling, 2012, vol. 4, no. 4, pp. 855-869
12. Zhmurov A.A., Barsegov V.A., Trifonov S.V., Kholodov Y.A., Kholodov A.S. Efficient Pseudorandom number generators for biomolecular simulations on graphics processors, Computer Research and Modeling, 2011, vol. 3, no. 3, pp. 287-308
13. Geller O.V., Vasilev M.O., Kholodov Y.A. Building a high-performance computing system for simulation of gas dynamics, Computer Research and Modeling, 2010, vol. 2, no. 3, pp. 309-317