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The work submits new release of the FlowVision software designed for automation of engineering calculations in computational fluid dynamics: FlowVision 3.09.05. The FlowVision software is used for solving different industrial problems. Its popularity is based on the capability to solve complex non-tradition problems involving different physical processes. The paradigm of complete automation of labor-intensive and time-taking processes like grid generation makes FlowVision attractive for many engineers. FlowVision is completely developer-independent software. It includes an advanced graphical interface, the system for specifying a computational project as well as the system for flow visualization on planes, on curvilinear surfaces and in volume by means of different methods: plots, color contours, iso-lines, iso-surfaces, vector fields. Besides that, FlowVision provides tools for calculation of integral characteristics on surfaces and in volumetric regions.

The software is based on the finite-volume approach to approximation of the partial differential equations describing fluid motion and accompanying physical processes. It provides explicit and implicit methods for time integration of these equations. The software includes automated generator of unstructured grid with capability of its local dynamic adaptation. The solver involves two-level parallelism which allows calculations on computers with distributed and shared memory (coexisting in the same hardware). FlowVision incorporates a wide spectrum of physical models: different turbulence models, models for mass transfer accounting for chemical reactions and radioactive decay, several combustion models, a dispersed phase model, an electro-hydrodynamic model, an original VOF model for tracking moving interfaces. It should be noted that turbulence can be simulated within URANS, LES, and ILES approaches. FlowVision simulates fluid motion with velocities corresponding to all possible flow regimes: from incompressible to hypersonic. This is achieved by using an original all-speed velocity-pressure split algorithm for integration of the Navier-Stokes equations.

FlowVision enables solving multi-physic problems with use of different modeling tools. For instance, one can simulate multi-phase flows with use of the VOF method, flows past bodies moving across a stationary grid (within Euler approach), flows in rotary machines with use of the technology of sliding grid. Besides that, the software solves fluid-structure interaction problems using the technology of two-way coupling of FlowVision with finite-element codes. Two examples of solving challenging problems in the FlowVision software are demonstrated in the given article. The first one is splashdown of a spacecraft after deceleration by means of jet engines. This problem is characterized by presence of moving bodies and contact surface between the air and the water in the computational domain. The supersonic jets interact with the air-water interphase. The second problem is simulation of the work of a human heart with artificial and natural valves designed on the basis of tomographic investigations with use of a finite-element model of the heart. This problem is characterized by two-way coupling between the “liquid” computational domain and the finite-element model of the hart muscles.

We study polynomial solutions of gyrostat motion equations under potential and gyroscopic forces applied and of gyrostat motion equations in magnetic field taking into account Barnett–London effect. Mathematically, either of the above mentioned problems is described by a system of non-linear ordinary differential equations whose right hand sides contain fifteen constant parameters. These parameters characterize the gyrostat mass distribution, as well as potential and non-potential forces acting on gyrostat. We consider polynomial solutions of Steklov–Kovalevski–Gorjachev and Doshkevich classes. The structure of invariant relations for polynomial solutions shows that, as a rule, on top of the fifteen parameters mentioned one should add no less than twenty five problem parameters. In the process of solving such a multi-parametric problem in this paper we (in addition to analytic approach) apply numeric methods based on CAS. We break our studies of polynomial solutions existence into two steps. During the first step, we estimate maximal degrees of polynomials considered and obtain a non-linear algebraic system for parameters of differential equations and polynomial solutions. In the second step (using the above CAS software) we study the solvability conditions of the system obtained and investigate the conditions of the constructed solutions to be real.

We construct two new polynomial solutions for Kirchhoff–Poisson. The first one is described by the following property: the projection squares of angular velocity on the non-baracentric axes are the fifth degree polynomials of the angular velocity vector component of the baracentric axis that is represented via hypereliptic function of time. The second solution is characterized by the following: the first component of velocity conditions is a second degree polynomial, the second component is a polynomial of the third degree, and the square of the third component is the sixth degree polynomial of the auxiliary variable that is an inversion of the elliptic Legendre integral.

The third new partial solution we construct for gyrostat motion equations in the magnetic field with Barnett–London effect. Its structure is the following: the first and the second components of the angular velocity vector are the second degree polynomials, and the square of the third component is a fourth degree polynomial of the auxiliary variable which is found via inversion of the elliptic Legendre integral of the third kind.

All the solutions constructed in this paper are new and do not have analogues in the fixed point dynamics of a rigid body.

Equations of motion in Newtonian and Hamiltonian forms are used for classical molecular dynamics simulation of particle system time evolution. When Newton equations of motion are used for finding of particle coordinates and velocities in $N$-particle system it takes to solve $3N$ ordinary differential equations of second order at every time step. Traditionally numerical schemes of Verlet method are used for solving Newtonian equations of motion of molecular dynamics. A step of integration is necessary to decrease for Verlet numerical schemes steadiness conservation on sufficiently large time intervals. It leads to a significant increase of the volume of calculations. Numerical schemes of Verlet method with Hamiltonian conservation control (the energy of the system) at every time moment are used in the most software packages of molecular dynamics for numerical integration of equations of motion. It can be used two complement each other approaches to decrease of computational time in molecular dynamics calculations. The first of these approaches is based on enhancement and software optimization of existing software packages of molecular dynamics by using of vectorization, parallelization and special processor construction. The second one is based on the elaboration of efficient methods for numerical integration for equations of motion. A procedure for constructing of explicit, implicit and symmetric symplectic numerical schemes with given approximation accuracy in relation to integration step for solving of molecular dynamic equations of motion in Hamiltonian form is proposed in this work. The approach for construction of proposed in this work procedure is based on the following points: Hamiltonian formulation of equations of motion; usage of Taylor expansion of exact solution; usage of generating functions, for geometrical properties of exact solution conservation, in derivation of numerical schemes. Numerical experiments show that obtained in this work symmetric symplectic third-order accuracy scheme conserves basic properties of the exact solution in the approximate solution. It is more stable for approximation step and conserves Hamiltonian of the system with more accuracy at a large integration interval then second order Verlet numerical schemes.

Comparative analysis of two numerical methods for simulation of unsteady natural convection and thermal surface radiation within a differentially heated cubical cavity has been carried out. The considered domain of interest had two isothermal opposite vertical faces, while other walls are adiabatic. The walls surfaces were diffuse and gray, namely, their directional spectral emissivity and absorptance do not depend on direction or wavelength but can depend on surface temperature. For the reflected radiation we had two approaches such as: 1) the reflected radiation is diffuse, namely, an intensity of the reflected radiation in any point of the surface is uniform for all directions; 2) the reflected radiation is uniform for each surface of the considered enclosure. Mathematical models formulated both in primitive variables “velocity–pressure” and in transformed variables “vector potential functions – vorticity vector” have been performed numerically using finite volume method and finite difference methods, respectively. It should be noted that radiative heat transfer has been analyzed using the net-radiation method in Poljak approach.

Using primitive variables and finite volume method for the considered boundary-value problem we applied power-law for an approximation of convective terms and central differences for an approximation of diffusive terms. The difference motion and energy equations have been solved using iterative method of alternating directions. Definition of the pressure field associated with velocity field has been performed using SIMPLE procedure.

Using transformed variables and finite difference method for the considered boundary-value problem we applied monotonic Samarsky scheme for convective terms and central differences for diffusive terms. Parabolic equations have been solved using locally one-dimensional Samarsky scheme. Discretization of elliptic equations for vector potential functions has been conducted using symmetric approximation of the second-order derivatives. Obtained difference equation has been solved by successive over-relaxation method. Optimal value of the relaxation parameter has been found on the basis of computational experiments.

As a result we have found the similar distributions of velocity and temperature in the case of these two approaches for different values of Rayleigh number, that illustrates an operability of the used techniques. The efficiency of transformed variables with finite difference method for unsteady problems has been shown.

A hyperbolic model of a viscous heat-conducting gas is presented, in which the Maxwell – Cattaneo approach is used to hyperbolize the equations, which provides finite wave propagation velocities. In the modified model, instead of the original Stokes and Fourier laws, their relaxation analogues were used and it is shown that when the relaxation times $\tau_\sigma^{}$ и $\tau_w^{}$ tend to The hyperbolized equations are reduced to zero to the classical Navier – Stokes system of non-hyperbolic type with infinite velocities of viscous and heat waves. It is noted that the hyperbolized system of equations of motion of a viscous heat-conducting gas considered in this paper is invariant not only with respect to the Galilean transformations, but also with respect to rotation, since the Yaumann derivative is used when differentiating the components of the viscous stress tensor in time. To integrate the equations of the model, the hybrid Godunov method (HGM) and the multidimensional nodal method of characteristics were used. The HGM is intended for the integration of hyperbolic systems in which there are equations written both in divergent form and not resulting in such (the original Godunov method is used only for systems of equations presented in divergent form). A linearized solver’s Riemann is used to calculate flow variables on the faces of adjacent cells. For divergent equations, a finitevolume approximation is applied, and for non-divergent equations, a finite-difference approximation is applied. To calculate a number of problems, we also used a non-conservative multidimensional nodal method of characteristics, which is based on splitting the original system of equations into a number of one-dimensional subsystems, for solving which a one-dimensional nodal method of characteristics was used. Using the described numerical methods, a number of one-dimensional problems on the decay of an arbitrary rupture are solved, and a two-dimensional flow of a viscous gas is calculated when a shock jump interacts with a rectangular step that is impermeable to gas.

The different types of the reduced equations are known in the dynamics a heavy rigid body with a fixed point. Since the Euler−Poisson’s equations admit the three first integrals, then for the first approach the obtaining new forms of equations are usually based on these integrals. The system of six scalar equations can be transformed to a third-order system with them. However, in indicated approach the reduced system will have a feature as in the form of radical expressions a relatively the components of the angular velocity vector. This fact prevents the effective the effective application of numerical and asymptotic methods of solutions research. In the second approach the different types of variables in a problem are used: Euler’s angles, Hamilton’s variables and other variables. In this approach the Euler−Poisson’s equations are reduced to either the system of second-order differential equations, or the system for which the special methods are effective. In the article the method of finding the reduced system based on the introduction of an auxiliary variable is applied. This variable characterizes the mixed product of the angular momentum vector, the vector of vertical and the unit vector barycentric axis of the body. The system of four differential equations, two of which are linear differential equations was obtained. This system has no analog and does not contain the features that allows to apply to it the analytical and numerical methods. Received form of equations is applied for the analysis of a special class of solutions in the case when the center of mass of the body belongs to the barycentric axis. The variant in which the sum of the squares of the two components of the angular momentum vector with respect to not barycentric axes is constant. It is proved that this variant exists only in the Steklov’s solution. The obtained form of Euler−Poisson’s equations can be used to the investigation of the conditions of existence of other classes of solutions. Certain perspectives obtained equations consists a record of all solutions for which the center of mass is on barycentric axis in the variables of this article. It allows to carry out a classification solutions of Euler−Poisson’s equations depending on the order of invariant relations. Since the equations system specified in the article has no singularities, it can be considered in computer modeling using numerical methods.

In this paper, a gravitational system is understood as a set of point bodies that interact according to Newton's law of attraction and have a negative value of the total energy. The question of the stability (nonstability) of a gravitational system of general position is discussed by direct computational experiment. A gravitational system of general position is a system in which the masses, initial positions, and velocities of bodies are chosen randomly from given ranges. A new method for the numerical solution of ordinary differential equations at large time intervals has been developed for the computational experiment. The proposed method allowed, on the one hand, to ensure the fulfillment of all conservation laws by a suitable correction of solutions, on the other hand, to use standard methods for the numerical solution of systems of differential equations of low approximation order. Within the framework of this method, the trajectory of a gravitational system in phase space is assembled from parts, the duration of each of which can be macroscopic. The constructed trajectory, generally speaking, is discontinuous, and the points of joining of individual pieces of the trajectory act as branch points. In connection with the latter circumstance, the proposed method, in part, can be attributed to the class of Monte Carlo methods. The general conclusion of a series of computational experiments has shown that gravitational systems of general position with a number of bodies of 3 or more, generally speaking, are unstable. In the framework of the proposed method, special cases of zero-equal angular momentum of a gravitational system with a number of bodies of 3 or more, as well as the problem of motion of two bodies, are specially considered. The case of numerical modeling of the dynamics of the solar system in time is considered separately. From the standpoint of computational experiments based on analytical methods, as well as direct numerical methods of high-order approximation (10 and higher), the stability of the solar system was previously demonstrated at an interval of five billion years or more. Due to the limitations on the available computational resources, the stability of the dynamics of the planets of the solar system within the framework of the proposed method was confirmed for a period of ten million years. With the help of a computational experiment, one of the possible scenarios for the disintegration of the solar systems is also considered.

The article discusses the model of the anthropomorphic type of mechanism of the exoskeleton with links of variable length. Four models of parts of variable length are considered comprehensively: the model link of the exoskeleton of variable length with a resilient member and a rigid strong core; the model of the telescopic link; the model link with the masses in the hinge-joint between them; the link model with an arbitrary number of masses. The differential equations of motion in the form of Lagrange equations of the second kind are made. On the basis of analysis of differential equations of motion for multi-link rod of a mechanical system type, exoskeleton revealed their structure, which allowed us to represent them in vector-matrix form. The General pattern of building matrices are established for the first time and the generalization of the expressions for elements of matrices in two-dimensional case are obtained. New recursive and matrix methods of composing of differential equations of motion are given. A unified approach to constructing differential equations of motion of the exoskeleton based on the developed recursive and matrix methods write differential equations of motion of the proposed exoskeleton. Comparison of the time of writing the differential equations of motion proposed methods, in comparison with the Lagrange equations of the second kind, in the system of computer mathematics Mathematica conducted. An analytical study of the model of the exoskeleton carried out. It was found that for mechanisms with n movable links of the Cauchy problem for systems of differential equations of motion for any initial conditions there is no single and unlimited continue. Control of the exoskeleton is accomplished using the torques which are located in the hinge-joints in the joints of the links and simulating control actions. Numerical investigation of a model of the exoskeleton is made, a comparison of results of calculations for exoskeletons with various models of units is held. A numerical study of the empirical evidence about the man and his movements is used. It is established that the choice structure of the exoskeleton model with lumped masses is more preferable to a model with perfectly rigid strong core. As an exoskeleton, providing comfortable movement of people, and you should repeat the properties of the musculoskeletal system.

In this paper we consider the controlled motion of a helical body with three blades in an ideal fluid, which is executed by rotating three internal rotors. We set the problem of selecting control actions, which ensure the motion of the body near the predetermined trajectory. To determine controls that guarantee motion near the given curve, we propose methods based on the application of hybrid genetic algorithms (genetic algorithms with real encoding and with additional learning of the leader of the population by a gradient method) and artificial neural networks. The correctness of the operation of the proposed numerical methods is estimated using previously obtained differential equations, which define the law of changing the control actions for the predetermined trajectory.

In the approach based on hybrid genetic algorithms, the initial problem of minimizing the integral functional reduces to minimizing the function of many variables. The given time interval is broken up into small elements, on each of which the control actions are approximated by Lagrangian polynomials of order 2 and 3. When appropriately adjusted, the hybrid genetic algorithms reproduce a solution close to exact. However, the cost of calculation of 1 second of the physical process is about 300 seconds of processor time.

To increase the speed of calculation of control actions, we propose an algorithm based on artificial neural networks. As the input signal the neural network takes the components of the required displacement vector. The node values of the Lagrangian polynomials which approximately describe the control actions return as output signals . The neural network is taught by the well-known back-propagation method. The learning sample is generated using the approach based on hybrid genetic algorithms. The calculation of 1 second of the physical process by means of the neural network requires about 0.004 seconds of processor time, that is, 6 orders faster than the hybrid genetic algorithm. The control calculated by means of the artificial neural network differs from exact control. However, in spite of this difference, it ensures that the predetermined trajectory is followed exactly.

The repressor is the first genetic regulatory network in synthetic biology, which was artificially constructed in 2000. It is a closed network of three genetic elements — $lacI$, $\lambda cI$ and $tetR$, — which have a natural origin, but are not found in nature in such a combination. The promoter of each of the three genes controls the next cistron via the negative feedback, suppressing the expression of the neighboring gene. In this paper, the nonlinear dynamics of a modified repressilator, which has time delays in all parts of the regulatory network, has been studied for the first time. Delay can be both natural, i.e. arises during the transcription/translation of genes due to the multistage nature of these processes, and artificial, i.e. specially to be introduced into the work of the regulatory network using synthetic biology technologies. It is assumed that the regulation is carried out by proteins being in a dimeric form. The considered repressilator has two more important modifications: the location on the same plasmid of the gene $gfp$, which codes for the fluorescent protein, and also the presence in the system of a DNA sponge. In the paper, the nonlinear dynamics has been considered within the framework of the deterministic description. By applying the method of decomposition into fast and slow motions, the set of nonlinear differential equations with delay on a slow manifold has been obtained. It is shown that there exists a single equilibrium state which loses its stability in an oscillatory manner at certain values of the control parameters. For a symmetric repressilator, in which all three genes are identical, an analytical solution for the neutral Andronov–Hopf bifurcation curve has been obtained. For the general case of an asymmetric repressilator, neutral curves are found numerically. It is shown that the asymmetric repressor generally is more stable, since the system is oriented to the behavior of the most stable element in the network. Nonlinear dynamic regimes arising in a repressilator with increase of the parameters are studied in detail. It was found that there exists a limit cycle corresponding to relaxation oscillations of protein concentrations. In addition to the limit cycle, we found the slow manifold not associated with above cycle. This is the long-lived transitional regime, which reflects the process of long-term synchronization of pulsations in the work of individual genes. The obtained results are compared with the experimental data known from the literature. The place of the model proposed in the present work among other theoretical models of the repressilator is discussed.