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Mathematical model and computer analysis of tests for homogeneity of “dose–effect” dependence
Computer Research and Modeling, 2012, v. 4, no. 2, pp. 267-273Views (last year): 6.The given work is devoted to the comparison of two tests for homogeneity: chi-square test based on contingency tables of 2 × 2 and test for homogeneity based on asymptotic distributions of the summarized square error of a distribution function estimators in the model of ”dose–effect” dependence. The evaluation of test power is performed by means of computer simulation. In order to design efficiency functions the method of kernel regression estimator based on Nadaray–Watson estimator is used.
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About quality of Kernel based object tracking
Computer Research and Modeling, 2014, v. 6, no. 4, pp. 495-502The kernel based object tracking algorithms were described that take in account the independent changes of the 4 and 5 out of 5 parameters of the elliptic tracking region. It is shown that in tracking this conditions are sufficient and attempts of prediction are not necessary.
Keywords: automatic tracking, kernel based object tracking.Views (last year): 4. Citations: 2 (RSCI). -
Estimation of natural frequencies of torsional vibrations of a composite nonlinearly viscoelastic shaft
Computer Research and Modeling, 2018, v. 10, no. 4, pp. 421-430Views (last year): 27.The article presents a method for linearization the effective function of material instantaneous deformation in order to generalize the torsional vibration equation to the case of nonlinearly deformable rheologically active shafts. It is considered layered and structurally heterogeneous, on average isotropic shafts made of nonlinearly viscoelastic components. The technique consists in determining the approximate shear modulus by minimizing the root-mean-square deviation in approximation of the effective diagram of instantaneous deformation.
The method allows to estimate analytically values of natural frequencies of layered and structurally heterogeneous nonlinearly viscoelastic shaft. This makes it possible to significantly reduce resources in vibration analysis, as well as to track changes in values of natural frequencies with changing geometric, physico-mechanical and structural parameters of shafts, which is especially important at the initial stages of modeling and design. In addition, the paper shows that only a pronounced nonlinearity of the effective state equation has an effect on the natural frequencies, and in some cases the nonlinearity in determining the natural frequencies can be neglected.
As equations of state of the composite material components, the article considers the equations of nonlinear heredity with instantaneous deformation functions in the form of the Prandtl’s bilinear diagrams. To homogenize the state equations of layered shafts, it is applied the Voigt’s hypothesis on the homogeneity of deformations and the Reuss’ hypothesis on the homogeneity of stresses in the volume of a composite body. Using these assumptions, effective secant and tangential shear moduli, proportionality limits, as well as creep and relaxation kernels of longitudinal, axial and transversely layered shafts are obtained. In addition, it is obtained the indicated effective characteristics of a structurally heterogeneous, on average isotropic shaft using the homogenization method previously proposed by the authors, based on the determination of the material deformation parameters by the rule of a mixture for the Voigt’s and the Reuss’ state equations.
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Test-signals forming method for correlation identification of nonlinear systems
Computer Research and Modeling, 2012, v. 4, no. 4, pp. 721-733Views (last year): 1. Citations: 3 (RSCI).Тhe new test-signals forming method for correlation identification of a nonlinear system based on Lee–Shetzen cross-correlation approach is developed and tested. Numerical Gauss–Newton algorithm is applied to correct autocorrelation functions of test signals. The achieved test-signals have length less than 40 000 points and allow to measure the 2nd order Wiener kernels with a linear resolution up to 32 points, the 3rd order Wiener kernels with a linear resolution up to 12 points and the 4th order Wiener kernels with a linear resolution up to 8 points.
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The model sound speed determination for the plane shear fluid flow problem solving by the SPH method
Computer Research and Modeling, 2024, v. 16, no. 2, pp. 339-351The problem discrete statement by the smoothed particle hydrodynamics method (SPH) include a discretization constants parameters set. Of them particular note is the model sound speed $c_0$, which relates the SPH-particle instantaneous density to the resulting pressure through the equation of state.
The paper describes an approach to the exact determination of the model sound speed required value. It is on the analysis based, how SPH-particle density changes with their relative shift. An example of the continuous medium motion taken the plane shear flow problem; the analysis object is the relative compaction function $\varepsilon_\rho$ in the SPH-particle. For various smoothing kernels was research the functions of $\varepsilon_\rho$, that allowed the pulsating nature of the pressures occurrence in particles to establish. Also the neighbors uniform distribution in the smoothing domain was determined, at which shaping the maximum of compaction in the particle.
Through comparison the function $\varepsilon_\rho$ with the SPH-approximation of motion equation is defined associate the discretization parameter $c_0$ with the smoothing kernel shape and other problem parameters. As a result, an equation is formulated that the necessary and sufficient model sound speed value provides finding. For such equation the expressions of root $c_0$ are given for three different smoothing kernels, that simplified from polynomials to numerical coefficients for the plane shear flow problem parameters.
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The two geometric parameters influence study on the hydrostatic problem solution accuracy by the SPH method
Computer Research and Modeling, 2021, v. 13, no. 5, pp. 979-992The two significant geometric parameters are proposed that affect the physical quantities interpolation in the smoothed particle hydrodynamics method (SPH). They are: the smoothing coefficient which the particle size and the smoothing radius are connecting and the volume coefficient which determine correctly the particle mass for a given particles distribution in the medium.
In paper proposes a technique for these parameters influence assessing on the SPH method interpolations accuracy when the hydrostatic problem solving. The analytical functions of the relative error for the density and pressure gradient in the medium are introduced for the accuracy estimate. The relative error functions are dependent on the smoothing factor and the volume factor. Designating a specific interpolation form in SPH method allows the differential form of the relative error functions to the algebraic polynomial form converting. The root of this polynomial gives the smoothing coefficient values that provide the minimum interpolation error for an assigned volume coefficient.
In this work, the derivation and analysis of density and pressure gradient relative errors functions on a sample of popular nuclei with different smoothing radius was carried out. There is no common the smoothing coefficient value for all the considered kernels that provides the minimum error for both SPH interpolations. The nuclei representatives with different smoothing radius are identified which make it possible the smallest errors of SPH interpolations to provide when the hydrostatic problem solving. As well, certain kernels with different smoothing radius was determined which correct interpolation do not allow provide when the hydrostatic problem solving by the SPH method.
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Mathematical and numerical modeling of a drop-shaped microcavity laser
Computer Research and Modeling, 2019, v. 11, no. 6, pp. 1083-1090This paper studies electromagnetic fields, frequencies of lasing, and emission thresholds of a drop-shaped microcavity laser. From the mathematical point of view, the original problem is a nonstandard two-parametric eigenvalue problem for the Helmholtz equation on the whole plane. The desired positive parameters are the lasing frequency and the threshold gain, the corresponding eigenfunctions are the amplitudes of the lasing modes. This problem is usually referred to as the lasing eigenvalue problem. In this study, spectral characteristics are calculated numerically, by solving the lasing eigenvalue problem on the basis of the set of Muller boundary integral equations, which is approximated by the Nystr¨om method. The Muller equations have weakly singular kernels, hence the corresponding operator is Fredholm with zero index. The Nyström method is a special modification of the polynomial quadrature method for boundary integral equations with weakly singular kernels. This algorithm is accurate for functions that are well approximated by trigonometric polynomials, for example, for eigenmodes of resonators with smooth boundaries. This approach leads to a characteristic equation for mode frequencies and lasing thresholds. It is a nonlinear algebraic eigenvalue problem, which is solved numerically by the residual inverse iteration method. In this paper, this technique is extended to the numerical modeling of microcavity lasers having a more complicated form. In contrast to the microcavity lasers with smooth contours, which were previously investigated by the Nyström method, the drop has a corner. We propose a special modification of the Nyström method for contours with corners, which takes also the symmetry of the resonator into account. The results of numerical experiments presented in the paper demonstrate the practical effectiveness of the proposed algorithm.
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Deep learning analysis of intracranial EEG for recognizing drug effects and mechanisms of action
Computer Research and Modeling, 2024, v. 16, no. 3, pp. 755-772Predicting novel drug properties is fundamental to polypharmacology, repositioning, and the study of biologically active substances during the preclinical phase. The use of machine learning, including deep learning methods, for the identification of drug – target interactions has gained increasing popularity in recent years.
The objective of this study was to develop a method for recognizing psychotropic effects and drug mechanisms of action (drug – target interactions) based on an analysis of the bioelectrical activity of the brain using artificial intelligence technologies.
Intracranial electroencephalographic (EEG) signals from rats were recorded (4 channels at a sampling frequency of 500 Hz) after the administration of psychotropic drugs (gabapentin, diazepam, carbamazepine, pregabalin, eslicarbazepine, phenazepam, arecoline, pentylenetetrazole, picrotoxin, pilocarpine, chloral hydrate). The signals were divided into 2-second epochs, then converted into $2000\times 4$ images and input into an autoencoder. The output of the bottleneck layer was subjected to classification and clustering using t-SNE, and then the distances between resulting clusters were calculated. As an alternative, an approach based on feature extraction with dimensionality reduction using principal component analysis and kernel support vector machine (kSVM) classification was used. Models were validated using 5-fold cross-validation.
The classification accuracy obtained for 11 drugs during cross-validation was $0.580 \pm 0.021$, which is significantly higher than the accuracy of the random classifier $(0.091 \pm 0.045, p < 0.0001)$ and the kSVM $(0.441 \pm 0.035, p < 0.05)$. t-SNE maps were generated from the bottleneck parameters of intracranial EEG signals. The relative proximity of the signal clusters in the parametric space was assessed.
The present study introduces an original method for biopotential-mediated prediction of effects and mechanism of action (drug – target interaction). This method employs convolutional neural networks in conjunction with a modified selective parameter reduction algorithm. Post-treatment EEGs were compressed into a unified parameter space. Using a neural network classifier and clustering, we were able to recognize the patterns of neuronal response to the administration of various psychotropic drugs.
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