All issues

Currently, different nonlinear numerical schemes of the spatial approximation are used in numerical simulation of boundary value problems for hyperbolic systems of partial differential equations (e. g. gas dynamics equations, MHD, deformable rigid body, etc.). This is due to the need to improve the order of accuracy and perform simulation of discontinuous solutions that are often occurring in such systems. The need for non-linear schemes is followed from the barrier theorem of S. K. Godunov that states the impossibility of constructing a linear scheme for monotone approximation of such equations with approximation order two or greater. One of the most accurate non-linear type schemes are ENO (essentially non oscillating) and their modifications, including WENO (weighted, essentially non oscillating) scemes. The last received the most widespread, since the same stencil width has a higher order of approximation than the ENO scheme. The benefit of ENO and WENO schemes is the ability to maintain a high-order approximation to the areas of non-monotonic solutions. The main difficulty of the analysis of such schemes comes from the fact that they themselves are nonlinear and are used to approximate the nonlinear equations. In particular, the linear stability condition was obtained earlier only for WENO5 scheme (fifth-order approximation on smooth solutions) and it is a numerical one. In this paper we consider the problem of construction and stability for WENO5, WENO7, WENO9, WENO11, and WENO13 finite volume schemes for the Hopf equation. In the first part of this article we discuss WENO methods in general, and give the explicit expressions for the coefficients of the polynomial weights and linear combinations required to build these schemes. We prove a series of assertions that can make conclusions about the order of approximation depending on the type of local solutions. Stability analysis is carried out on the basis of the principle of frozen coefficients. The cases of a smooth and discontinuous behavior of solutions in the field of linearization with frozen coefficients on the faces of the final volume and spectra of the schemes are analyzed for these cases. We prove the linear stability conditions for a variety of Runge-Kutta methods applied to WENO schemes. As a result, our research provides guidance on choosing the best possible stability parameter, which has the smallest effect on the nonlinear properties of the schemes. The convergence of the schemes is followed from the analysis.

WENO schemes (weighted, essentially non oscillating) are currently having a wide range of applications as approximate high order schemes for discontinuous solutions of partial differential equations. These schemes are used for direct numerical simulation (DNS) and large eddy simmulation in the gas dynamic problems, problems for DNS in MHD and even neutron kinetics. This work is dedicated to clarify some characteristics of WENO schemes and numerical simulation of specific tasks. Results of the simulations can be used to clarify the field of application of these schemes. The first part of the work contained proofs of the approximation properties, stability and convergence of WENO5, WENO7, WENO9, WENO11 and WENO13 schemes. In the second part of the work the modified wave number analysis is conducted that allows to conclude the dispersion and dissipative properties of schemes. Further, a numerical simulation of a number of specific problems for hyperbolic equations is conducted, namely for advection equations (one-dimensional and two-dimensional), Hopf equation, Burgers equation (with low dissipation) and equations of non viscous gas dynamics (onedimensional and two-dimensional). For each problem that is implying a smooth solution, the practical calculation of the order of approximation via Runge method is performed. The influence of a time step on nonlinear properties of the schemes is analyzed experimentally in all problems and cross checked with the first part of the paper. In particular, the advection equations of a discontinuous function and Hopf equations show that the failure of the recommendations from the first part of the paper leads first to an increase in total variation of the solution and then the approximation is decreased by the non-linear dissipative mechanics of the schemes. Dissipation of randomly distributed initial conditions in a periodic domain for one-dimensional Burgers equation is conducted and a comparison with the spectral method is performed. It is concluded that the WENO7–WENO13 schemes are suitable for direct numerical simulation of turbulence. At the end we demonstrate the possibility of the schemes to be used in solution of initial-boundary value problems for equations of non viscous gas dynamics: Rayleigh–Taylor instability and the reflection of the shock wave from a wedge with the formation a complex configuration of shock waves and discontinuities.

In this paper a numerical model for blood flow through a venous bifurcation with an obliterating clot is investigated. We studied propagation of perturbations of blood flow velocity and perturbations of pressure inside the vein. The model is built in acoustic (linear) approximation. Computational results reveal conditions for clot resonance oscillation, which can cause its detachment and thromboembolism.

Kuramoto model of non-linearly coupled oscillators provides a simple but effective approach to the study of the synchronization phenomenon in complex systems. In the present article we consider a particular Kuramoto model with three non-identical oscillators associated with a multi-cell radial profile of the solar meridional circulation. The top and the bottom oscillators are coupled through the middle one. The main difference of the present Kuramoto model from the previous ones consists in the non-identical coupling: coupling coefficients which tie the middle oscillator with the top and the bottom ones are different. We investigate how the value of the coupling asymmetry of the middle oscillator influences the synchronization. In the present model the synchronization conditions appear to be different the classical Kuramoto model allowing the synchronization to be reached with weaker coupling. We perform a reconstruction of coupling coefficients from the phase difference between the top and the bottom oscillators, assuming that the synchronization is reached and the natural frequencies are known. The absolute cumulative coupling is uniquely determined by the phase difference between the top and the bottom oscillators and the coupling asymmetry of the middle oscillator. In general case, higher values of the coupling asymmetry of the middle oscillator correspond to lower cumulative coupling. A unique coupling reconstruction with unknown coupling asymmetry is possible in general case only for the weak cumulative coupling. Deviations from the general case are discussed. We perform a model simulation with natural frequencies estimated from the velocities of the solar meridional flow. Heliseismological observations of the deep flow may be attributed either to the middle cell or to the deep one. We discuss the difference between these two cases in terms of the coupling reconstruction.

We derive a new model of circadian oscillations in Neurospora crassa, which is suitable to analyze both temporal and spatial dynamics of proteins responsible for mechanism of rythms. The model is based on the non-linear interplay between proteins FRQ and WCC which are products of transcription of frequency and white collar genes forming a feedback loop comprised both positive and negative elements. The main component of oscillations mechanism is supposed to be time-delay in biochemical reactions of transcription. We show that the model accounts for various features observed in Neurospora’s experiments such as entrainment by light cycles, phase shift under light pulse, robustness to action of fluctuations and so on. Wave patterns excited during spatial development of the system are studied. It is shown that the wave of synchronization of biorythms arises under basal transcription factors.