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Mathematical modeling of the mechanism of a reproductive strategies differentiation in natural populations (on the example of arctic fox, Alopex lagopus)
Computer Research and Modeling, 2016, v. 8, no. 2, pp. 213-228Views (last year): 7. Citations: 5 (RSCI).This paper considers the integrated approach to modeling the dynamics of genetic structure and the number of natural population. A set of dynamic models with different types of natural selection is used to describe a possible mechanism for the fixing of a genetic diversity in size of the litter in coastal, continental and farmed populations of arctic fox (Alopex lagopus, Canidae, Carnivora) observed now. The most interesting results have been obtained with the model of population consisting of two stages of development. At that with the frame of this model a dynamics of population genetic structure on genotypes was analyzed to consider different reproductive abilities and fitnesses of pups on the early stage of lifecycle which defined by the single diallelic gene. This model allows to receive a monomorphism for coastal populations of arctic fox, where food resources are practically constant. As well the model allows polymorphism with cyclical fluctuations in the number and frequency of the gene in the continental populations due to regular fluctuating of rodent number, the major component of its food. In farmed populations by selective selection carried out by farmers to increase the reproductive success, this gene is a pleiotropic one (i. e., determining the survival rate of individuals both early and late stages of their life cycle); so an application of appropriate model (with the selection of pleiotropic gene) allows to get an adequate rate of elimination for small litters allele.
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The error accumulation in the conjugate gradient method for degenerate problem
Computer Research and Modeling, 2021, v. 13, no. 3, pp. 459-472In this paper, we consider the conjugate gradient method for solving the problem of minimizing a quadratic function with additive noise in the gradient. Three concepts of noise were considered: antagonistic noise in the linear term, stochastic noise in the linear term and noise in the quadratic term, as well as combinations of the first and second with the last. It was experimentally obtained that error accumulation is absent for any of the considered concepts, which differs from the folklore opinion that, as in accelerated methods, error accumulation must take place. The paper gives motivation for why the error may not accumulate. The dependence of the solution error both on the magnitude (scale) of the noise and on the size of the solution using the conjugate gradient method was also experimentally investigated. Hypotheses about the dependence of the error in the solution on the noise scale and the size (2-norm) of the solution are proposed and tested for all the concepts considered. It turned out that the error in the solution (by function) linearly depends on the noise scale. The work contains graphs illustrating each individual study, as well as a detailed description of numerical experiments, which includes an account of the methods of noise of both the vector and the matrix.
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The stabilizing role of fish population structure under the influence of fishery and random environment variations
Computer Research and Modeling, 2017, v. 9, no. 4, pp. 609-620Views (last year): 6. Citations: 2 (RSCI).We study the influence of fishery on a structured fish population under random changes of habitat conditions. The population parameters correspond to dominant pelagic fish species of Far-Eastern seas of the northwestern part of the Pacific Ocean (pollack, herring, sardine). Similar species inhabit various parts of the Word Ocean. The species body size distribution was chosen as a main population feature. This characteristic is easy to measure and adequately defines main specimen qualities such as age, maturity and other morphological and physiological peculiarities. Environmental fluctuations have a great influence on the individuals in early stages of development and have little influence on the vital activity of mature individuals. The fishery revenue was chosen as an optimality criterion. The main control characteristic is fishing effort. We have chosen quadratic dependence of fishing revenue on the fishing effort according to accepted economic ideas stating that the expenses grow with the production volume. The model study shows that the population structure ensures the increased population stability. The growth and drop out of the individuals’ due to natural mortality smoothens the oscillations of population density arising from the strong influence of the fluctuations of environment on young individuals. The smoothing part is played by diffusion component of the growth processes. The fishery in its turn smooths the fluctuations (including random fluctuations) of the environment and has a substantial impact upon the abundance of fry and the subsequent population dynamics. The optimal time-dependent fishing effort strategy was compared to stationary fishing effort strategy. It is shown that in the case of quickly changing habitat conditions and stochastic dynamics of population replenishment there exists a stationary fishing effort having approximately the same efficiency as an optimal time-dependent fishing effort. This means that a constant or weakly varying fishing effort can be very efficient strategy in terms of revenue.
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The model of two-level intergroup competition
Computer Research and Modeling, 2023, v. 15, no. 2, pp. 355-368At the middle of the 2000-th, scientists studying the functioning of insect communities identified four basic patterns of the organizational structure of such communities. (i) Cooperation is more developed in groups with strong kinship. (ii) Cooperation in species with large colony sizes is often more developed than in species with small colony sizes. And small-sized colonies often exhibit greater internal reproductive conflict and less morphological and behavioral specialization. (iii) Within a single species, brood size (i. e., in a sense, efficiency) per capita usually decreases as colony size increases. (iv) Advanced cooperation tends to occur when resources are limited and intergroup competition is fierce. Thinking of the functioning of a group of organisms as a two-level competitive market in which individuals face the problem of allocating their energy between investment in intergroup competition and investment in intragroup competition, i. e., an internal struggle for the share of resources obtained through intergroup competition, we can compare such a biological situation with the economic phenomenon of “coopetition” — the cooperation of competing agents with the goal of later competitively dividing the resources won in consequence In the framework of economic researches the effects similar to (ii) — in the framework of large and small group competition the optimal strategy of large group would be complete squeezing out of the second group and monopolization of the market (i. e. large groups tend to act cooperatively) and (iii) — there are conditions, in which the size of the group has a negative impact on productivity of each of its individuals (this effect is called the paradox of group size or Ringelman effect). The general idea of modeling such effects is the idea of proportionality — each individual (an individual/rational agent) decides what share of his forces to invest in intergroup competition and what share to invest in intragroup competition. The group’s gain must be proportional to its total investment in competition, while the individual’s gain is proportional to its contribution to intra-group competition. Despite the prevalence of empirical observations, no gametheoretic model has yet been introduced in which the empirically observed effects can be confirmed. This paper proposes a model that eliminates the problems of previously existing ones and the simulation of Nash equilibrium states within the proposed model allows the above effects to be observed in numerical experiments.
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Harvesting impact on population dynamics with age and sex structure: optimal harvesting and the hydra effect
Computer Research and Modeling, 2022, v. 14, no. 5, pp. 1107-1130Based on the time-discrete model, we study the effect of selective proportional harvesting on the population dynamics with age and sex structure. When constructing the model, we assume that the population birth rate depends on the ratio of the sexes and the number of formed pairs. The regulation of population growth is carried out by limiting the juvenile’s survival when the survival of immature individuals decreases with an increase in the numbers of sex and age classes. We consider cases where the harvest is carried out only from a younger age class or from a group of mature females or males. We find that the harvesting of males or females at the optimal level is responsible for changing the ratio of females to males (taking into account the average size of the harem). We show that the maximum number of harvested males is achieved either at such a harvest rate when their excess number is withdrawn and the balance of sexes is established or at such an optimal catch quota at which the sex ratio is shifted towards breeding females. Optimal female harvesting, in which the highest number of them are taken, either maintains a preexisting shortage of adult males or leads to an excess of males or the fixing of a sex balance. We find that, depending on the population parameters for all considered harvesting strategies, the hydra effect can observe, i. e., the equilibrium size of the exploited sex and age-specific group (after reproduction) can increase with the growth of harvesting intensity. The selective harvesting, due to which the hydra effect occurs, simultaneously leads to an increase remaining population size and the number of harvested individuals. At the same time, the size of the exploited group after reproduction can become even more than without exploitation. Equilibrium harvesting with the optimal harvest rate that maximizes yield leads to a population size decrease. The effect of hydra is at lower values of the catch quota than the optimal harvest rate. At the same time, the consequence of the hydra effect may be a higher abundance of the age-sex group under optimal exploitation compared to the level observed in the absence of harvesting.
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A plankton community: a zooplankton effect in phytoplankton dynamics
Computer Research and Modeling, 2019, v. 11, no. 4, pp. 751-768Views (last year): 3.The paper uses methods of mathematical modeling to estimate a zooplankton influence on the dynamics of phytoplankton abundance. We propose a three-component model of the “phytoplankton–zooplankton” community with discrete time, considering a heterogeneity of zooplankton according to the developmental stage and type of feeding; the model takes into account cannibalism in zooplankton community, during which mature individuals of some of its species consume juvenile ones. Survival rates at the early stages of zooplankton life cycle depend explicitly on the interaction between zooplankton and phytoplankton. Loss of phytoplankton biomass because of zooplankton consumption is explicitly considered. We use the Holling functional response of type II to describe saturation during biomass consumption. The dynamics of the phytoplankton community is represented by the Ricker model, which allows to take into account the restriction of phytoplankton biomass growth by the availability of external resources (mineral nutrition, oxygen, light, etc.) implicitly.
The study analyzed scenarios of the transition from stationary dynamics to fluctuations in the size of phytoand zooplankton for various values of intrapopulation parameters determining the nature of the dynamics of the species constituting the community, and the parameters of their interaction. The focus is on exploring the complex modes of community dynamics. In the framework of the model used for describing dynamics of phytoplankton in the absence of interspecific interaction, phytoplankton dynamics undergoes a series of perioddoubling bifurcations. At the same time, with zooplankton appearance, the cascade of period-doubling bifurcations in phytoplankton and the community as a whole is realized earlier (at lower reproduction rates of phytoplankton cells) than in the case when phytoplankton develops in isolation. Furthermore, the variation in the cannibalism level in zooplankton can significantly change both the existing dynamics in the community and its bifurcation; e.g., with a certain structure of zooplankton food relationships the realization of Neimark–Sacker bifurcation scenario in the community is possible. Considering the cannibalism level in zooplankton can change due to the natural maturation processes and achievement of the carnivorous stage by some individuals, one can expect pronounced changes in the dynamic mode of the community, i.e. abrupt transitions from regular to quasiperiodic dynamics (according to Neimark–Sacker scenario) and further cycles with a short period (the implementation of period halving bifurcation).
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Effects of the heart contractility and its vascular load on the heart rate in athlets
Computer Research and Modeling, 2017, v. 9, no. 2, pp. 323-329Views (last year): 5. Citations: 1 (RSCI).Heart rate (HR) is the most affordable indicator for measuring. In order to control the individual response to physical exercises of different load types heart rate is measured when the athletes perform different types of muscular work (strength machines, various types of training and competitive exercises). The magnitude of heart rate and its dynamics during muscular work and recovery can be objectively judged on the functional status of the cardiovascular system of an athlete, the level of its individual physical performance, as well as an adaptive response to a particular exercise. However, the heart rate is not an independent determinant of the physical condition of an athlete. HR size is formed by the interaction of the basic physiological mechanisms underlying cardiac hemodynamic ejection mode. Heart rate depends on one hand, on contractility of the heart, the venous return, the volumes of the atria and ventricles of the heart and from vascular heart load, the main components of which are elastic and peripheral resistance of the arterial system on the other hand. The values of arterial system vascular resistances depend on the power of muscular work and its duration. HR sensitivity to changes in heart load and vascular contraction was determined in athletes by pair regression analysis simultaneously recorded heart rate data, and peripheral $(R)$ and elastic $(E_a)$ resistance (heart vascular load), and the power $(W)$ of heartbeats (cardiac contractility). The coefficients of sensitivity and pair correlation between heart rate indicators and vascular load and contractility of left ventricle of the heart were determined in athletes at rest and during the muscular work on the cycle ergometer. It is shown that increase in both ergometer power load and heart rate is accompanied by the increase of correlation coefficients and coefficients of the heart rate sensitivity to $R$, $E_a$ and $W$.
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Hypergeometric functions in model of General equilibrium of multisector economy with monopolistic competition
Computer Research and Modeling, 2017, v. 9, no. 5, pp. 825-836Views (last year): 10.We show that basic properties of some models of monopolistic competition are described using families of hypergeometric functions. The results obtained by building a general equilibrium model in a multisector economy producing a differentiated good in $n$ high-tech sectors in which single-product firms compete monopolistically using the same technology. Homogeneous (traditional) sector is characterized by perfect competition. Workers are motivated to find a job in high-tech sectors as wages are higher there. However, they are at risk to remain unemployed. Unemployment persists in equilibrium by labor market imperfections. Wages are set by firms in high-tech sectors as a result of negotiations with employees. It is assumed that individuals are homogeneous consumers with identical preferences that are given the separable utility function of general form. In the paper the conditions are found such that the general equilibrium in the model exists and is unique. The conditions are formulated in terms of the elasticity of substitution $\mathfrak{S}$ between varieties of the differentiated good which is averaged over all consumers. The equilibrium found is symmetrical with respect to the varieties of differentiated good. The equilibrium variables can be represented as implicit functions which properties are associated elasticity $\mathfrak{S}$ introduced by the authors. A complete analytical description of the equilibrium variables is possible for known special cases of the utility function of consumers, for example, in the case of degree functions, which are incorrect to describe the response of the economy to changes in the size of the markets. To simplify the implicit function, we introduce a utility function defined by two one-parameter families of hypergeometric functions. One of the families describes the pro-competitive, and the other — anti-competitive response of prices to an increase in the size of the economy. A parameter change of each of the families corresponds to all possible values of the elasticity $\mathfrak{S}$. In this sense, the hypergeometric function exhaust natural utility function. It is established that with the increase in the elasticity of substitution between the varieties of the differentiated good the difference between the high-tech and homogeneous sectors is erased. It is shown that in the case of large size of the economy in equilibrium individuals consume a small amount of each product as in the case of degree preferences. This fact allows to approximate the hypergeometric functions by the sum of degree functions in a neighborhood of the equilibrium values of the argument. Thus, the change of degree utility functions by hypergeometric ones approximated by the sum of two power functions, on the one hand, retains all the ability to configure parameters and, on the other hand, allows to describe the effects of change the size of the sectors of the economy.
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Influence of harvesting on the dynamics of predator-prey community with age-structure for prey
Computer Research and Modeling, 2021, v. 13, no. 4, pp. 823-844The paper studies the influence of selective harvest on dynamic modes of the «predator–prey» community with age structure for prey. We use a slight modification of the Nicholson-Bailey model to describe the interaction between predator and prey. We assume the prey population size is regulated by a decrease in survival rate of juvenile with an increase in the size of age class. The aim is to study the mechanisms of formation and evolution of dynamic modes for the structured «predator–prey» community model due to selective harvesting. We considered the cases when a harvest of some part of predator or prey population or one of the prey’s age classes is realized. The conditions of stable coexistence of interacting species and scenarios of the occurrence of oscillatory modes of abundance are studied. It is shown the harvesting of only young individuals of prey or simultaneous removal of young and adult individuals leads to expansion of parameter space domain with stable dynamics of prey population both with and without a predator. At the same time, the bistability domain narrows, in which changing initial conditions leads to the predator either remains in the community or dies from lack of food. In the case of the harvest for prey adult individuals or predator, the predator preservation in the community is ensured by high values of the prey birth rate, moreover bistability domain expands. With the removal of both juvenile preys and predators, an increase in the survival rates of adult prey leads to stabilization of the community dynamics. The juveniles’ harvest can lead to damping of oscillations and stabilize the prey dynamics in the predator absence. Moreover, it can change the scenario of the coexistence of species — from habitation of preys without predators to a sustainable coexistence of both species. The harvest of some part of predator or prey or the prey’s older age class can lead to both oscillations damping and stable dynamics of the interacting species, and to the destruction of the community, that is, to the death of predator.
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Classification of pest-damaged coniferous trees in unmanned aerial vehicles images using convolutional neural network models
Computer Research and Modeling, 2024, v. 16, no. 5, pp. 1271-1294This article considers the task of multiclass classification of coniferous trees with varying degrees of damage by insect pests on images obtained using unmanned aerial vehicles (UAVs). We propose the use of convolutional neural networks (CNNs) for the classification of fir trees Abies sibirica and Siberian pine trees Pinus sibirica in unmanned aerial vehicles (UAV) imagery. In our approach, we develop three CNN models based on the classical U-Net architecture, designed for pixel-wise classification of images (semantic segmentation). The first model, Mo-U-Net, incorporates several changes to the classical U-Net model. The second and third models, MSC-U-Net and MSC-Res-U-Net, respectively, form ensembles of three Mo-U-Net models, each varying in depth and input image sizes. Additionally, the MSC-Res-U-Net model includes the integration of residual blocks. To validate our approach, we have created two datasets of UAV images depicting trees affected by pests, specifically Abies sibirica and Pinus sibirica, and trained the proposed three CNN models utilizing mIoULoss and Focal Loss as loss functions. Subsequent evaluation focused on the effectiveness of each trained model in classifying damaged trees. The results obtained indicate that when mIoULoss served as the loss function, the proposed models fell short of practical applicability in the forestry industry, failing to achieve classification accuracy above the threshold value of 0.5 for individual classes of both tree species according to the IoU metric. However, under Focal Loss, the MSC-Res-U-Net and Mo-U-Net models, in contrast to the third proposed model MSC-U-Net, exhibited high classification accuracy (surpassing the threshold value of 0.5) for all classes of Abies sibirica and Pinus sibirica trees. Thus, these results underscore the practical significance of the MSC-Res-U-Net and Mo-U-Net models for forestry professionals, enabling accurate classification and early detection of pest outbreaks in coniferous trees.
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International Interdisciplinary Conference "Mathematics. Computing. Education"