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Designing a zero on a linear manifold, a polyhedron, and a vertex of a polyhedron. Newton methods of minimization
Computer Research and Modeling, 2019, v. 11, no. 4, pp. 563-591Views (last year): 6.We consider the approaches to the construction of methods for solving four-dimensional programming problems for calculating directions for multiple minimizations of smooth functions on a set of a given set of linear equalities. The approach consists of two stages.
At the first stage, the problem of quadratic programming is transformed by a numerically stable direct multiplicative algorithm into an equivalent problem of designing the origin of coordinates on a linear manifold, which defines a new mathematical formulation of the dual quadratic problem. For this, a numerically stable direct multiplicative method for solving systems of linear equations is proposed, taking into account the sparsity of matrices presented in packaged form. The advantage of this approach is to calculate the modified Cholesky factors to construct a substantially positive definite matrix of the system of equations and its solution in the framework of one procedure. And also in the possibility of minimizing the filling of the main rows of multipliers without losing the accuracy of the results, and no changes are made in the position of the next processed row of the matrix, which allows the use of static data storage formats.
At the second stage, the necessary and sufficient optimality conditions in the form of Kuhn–Tucker determine the calculation of the direction of descent — the solution of the dual quadratic problem is reduced to solving a system of linear equations with symmetric positive definite matrix for calculating of Lagrange's coefficients multipliers and to substituting the solution into the formula for calculating the direction of descent.
It is proved that the proposed approach to the calculation of the direction of descent by numerically stable direct multiplicative methods at one iteration requires a cubic law less computation than one iteration compared to the well-known dual method of Gill and Murray. Besides, the proposed method allows the organization of the computational process from any starting point that the user chooses as the initial approximation of the solution.
Variants of the problem of designing the origin of coordinates on a linear manifold, a convex polyhedron and a vertex of a convex polyhedron are presented. Also the relationship and implementation of methods for solving these problems are described.
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Direct multiplicative methods for sparse matrices. Unbalanced linear systems.
Computer Research and Modeling, 2016, v. 8, no. 6, pp. 833-860Views (last year): 20. Citations: 2 (RSCI).Small practical value of many numerical methods for solving single-ended systems of linear equations with ill-conditioned matrices due to the fact that these methods in the practice behave quite differently than in the case of precise calculations. Historically, sustainability is not enough attention was given, unlike in numerical algebra ‘medium-sized’, and emphasis is given to solving the problems of maximal order in data capabilities of the computer, including the expense of some loss of accuracy. Therefore, the main objects of study is the most appropriate storage of information contained in the sparse matrix; maintaining the highest degree of rarefaction at all stages of the computational process. Thus, the development of efficient numerical methods for solving unstable systems refers to the actual problems of computational mathematics.
In this paper, the approach to the construction of numerically stable direct multiplier methods for solving systems of linear equations, taking into account sparseness of matrices, presented in packaged form. The advantage of the approach consists in minimization of filling the main lines of the multipliers without compromising accuracy of the results and changes in the position of the next processed row of the matrix are made that allows you to use static data storage formats. The storage format of sparse matrices has been studied and the advantage of this format consists in possibility of parallel execution any matrix operations without unboxing, which significantly reduces the execution time and memory footprint.
Direct multiplier methods for solving systems of linear equations are best suited for solving problems of large size on a computer — sparse matrix systems allow you to get multipliers, the main row of which is also sparse, and the operation of multiplication of a vector-row of the multiplier according to the complexity proportional to the number of nonzero elements of this multiplier.
As a direct continuation of this work is proposed in the basis for constructing a direct multiplier algorithm of linear programming to put a modification of the direct multiplier algorithm for solving systems of linear equations based on integration of technique of linear programming for methods to select the host item. Direct multiplicative methods of linear programming are best suited for the construction of a direct multiplicative algorithm set the direction of descent Newton methods in unconstrained optimization by integrating one of the existing design techniques significantly positive definite matrix of the second derivatives.
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Direct multiplicative methods for sparse matrices. Linear programming
Computer Research and Modeling, 2017, v. 9, no. 2, pp. 143-165Views (last year): 10. Citations: 2 (RSCI).Multiplicative methods for sparse matrices are best suited to reduce the complexity of operations solving systems of linear equations performed on each iteration of the simplex method. The matrix of constraints in these problems of sparsely populated nonzero elements, which allows to obtain the multipliers, the main columns which are also sparse, and the operation of multiplication of a vector by a multiplier according to the complexity proportional to the number of nonzero elements of this multiplier. In addition, the transition to the adjacent basis multiplier representation quite easily corrected. To improve the efficiency of such methods requires a decrease in occupancy multiplicative representation of the nonzero elements. However, at each iteration of the algorithm to the sequence of multipliers added another. As the complexity of multiplication grows and linearly depends on the length of the sequence. So you want to run from time to time the recalculation of inverse matrix, getting it from the unit. Overall, however, the problem is not solved. In addition, the set of multipliers is a sequence of structures, and the size of this sequence is inconvenient is large and not precisely known. Multiplicative methods do not take into account the factors of the high degree of sparseness of the original matrices and constraints of equality, require the determination of initial basic feasible solution of the problem and, consequently, do not allow to reduce the dimensionality of a linear programming problem and the regular procedure of compression — dimensionality reduction of multipliers and exceptions of the nonzero elements from all the main columns of multipliers obtained in previous iterations. Thus, the development of numerical methods for the solution of linear programming problems, which allows to overcome or substantially reduce the shortcomings of the schemes implementation of the simplex method, refers to the current problems of computational mathematics.
In this paper, the approach to the construction of numerically stable direct multiplier methods for solving problems in linear programming, taking into account sparseness of matrices, presented in packaged form. The advantage of the approach is to reduce dimensionality and minimize filling of the main rows of multipliers without compromising accuracy of the results and changes in the position of the next processed row of the matrix are made that allows you to use static data storage formats.
As a direct continuation of this work is the basis for constructing a direct multiplicative algorithm set the direction of descent in the Newton methods for unconstrained optimization is proposed to put a modification of the direct multiplier method, linear programming by integrating one of the existing design techniques significantly positive definite matrix of the second derivatives.
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Direct multiplicative methods for sparse matrices. Newton methods
Computer Research and Modeling, 2017, v. 9, no. 5, pp. 679-703Views (last year): 7. Citations: 1 (RSCI).We consider a numerically stable direct multiplicative algorithm of solving linear equations systems, which takes into account the sparseness of matrices presented in a packed form. The advantage of the algorithm is the ability to minimize the filling of the main rows of multipliers without losing the accuracy of the results. Moreover, changes in the position of the next processed row of the matrix are not made, what allows using static data storage formats. Linear system solving by a direct multiplicative algorithm is, like the solving with $LU$-decomposition, just another scheme of the Gaussian elimination method implementation.
In this paper, this algorithm is the basis for solving the following problems:
Problem 1. Setting the descent direction in Newtonian methods of unconditional optimization by integrating one of the known techniques of constructing an essentially positive definite matrix. This approach allows us to weaken or remove additional specific difficulties caused by the need to solve large equation systems with sparse matrices presented in a packed form.
Problem 2. Construction of a new mathematical formulation of the problem of quadratic programming and a new form of specifying necessary and sufficient optimality conditions. They are quite simple and can be used to construct mathematical programming methods, for example, to find the minimum of a quadratic function on a polyhedral set of constraints, based on solving linear equations systems, which dimension is not higher than the number of variables of the objective function.
Problem 3. Construction of a continuous analogue of the problem of minimizing a real quadratic polynomial in Boolean variables and a new form of defining necessary and sufficient conditions of optimality for the development of methods for solving them in polynomial time. As a result, the original problem is reduced to the problem of finding the minimum distance between the origin and the angular point of a convex polyhedron, which is a perturbation of the $n$-dimensional cube and is described by a system of double linear inequalities with an upper triangular matrix of coefficients with units on the main diagonal. Only two faces are subject to investigation, one of which or both contains the vertices closest to the origin. To calculate them, it is sufficient to solve $4n – 4$ linear equations systems and choose among them all the nearest equidistant vertices in polynomial time. The problem of minimizing a quadratic polynomial is $NP$-hard, since an $NP$-hard problem about a vertex covering for an arbitrary graph comes down to it. It follows therefrom that $P = NP$, which is based on the development beyond the limits of integer optimization methods.
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Direct multiplicative methods for sparse matrices. Quadratic programming
Computer Research and Modeling, 2018, v. 10, no. 4, pp. 407-420Views (last year): 32.A numerically stable direct multiplicative method for solving systems of linear equations that takes into account the sparseness of matrices presented in a packed form is considered. The advantage of the method is the calculation of the Cholesky factors for a positive definite matrix of the system of equations and its solution within the framework of one procedure. And also in the possibility of minimizing the filling of the main rows of multipliers without losing the accuracy of the results, and no changes are made to the position of the next processed row of the matrix, which allows using static data storage formats. The solution of the system of linear equations by a direct multiplicative algorithm is, like the solution with LU-decomposition, just another scheme for implementing the Gaussian elimination method.
The calculation of the Cholesky factors for a positive definite matrix of the system and its solution underlies the construction of a new mathematical formulation of the unconditional problem of quadratic programming and a new form of specifying necessary and sufficient conditions for optimality that are quite simple and are used in this paper to construct a new mathematical formulation for the problem of quadratic programming on a polyhedral set of constraints, which is the problem of finding the minimum distance between the origin ordinate and polyhedral boundary by means of a set of constraints and linear algebra dimensional geometry.
To determine the distance, it is proposed to apply the known exact method based on solving systems of linear equations whose dimension is not higher than the number of variables of the objective function. The distances are determined by the construction of perpendiculars to the faces of a polyhedron of different dimensions. To reduce the number of faces examined, the proposed method involves a special order of sorting the faces. Only the faces containing the vertex closest to the point of the unconditional extremum and visible from this point are subject to investigation. In the case of the presence of several nearest equidistant vertices, we investigate a face containing all these vertices and faces of smaller dimension that have at least two common nearest vertices with the first face.
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Overset grids approach for topography modeling in elastic-wave modeling using the grid-characteristic method
Computer Research and Modeling, 2019, v. 11, no. 6, pp. 1049-1059While modeling seismic wave propagation, it is important to take into account nontrivial topography, as this topography causes multiple complex phenomena, such as diffraction at rough surfaces, complex propagation of Rayleigh waves, and side effects caused by wave interference. The primary goal of this research is to construct a method that implements the free surface on topography, utilizing an overset curved grid for characterization, while keeping the main grid structured rectangular. For a combination of the regular and curve-linear grid, the workability of the grid characteristics method using overset grids (also known as the Chimera grid approach) is analyzed. One of the benefits of this approach is computational complexity reduction, caused by the fact that simulation in a regular, homogeneous physical area using a sparse regular rectangle grid is simpler. The simplification of the mesh building mechanism (one grid is regular, and the other can be automatically built using surface data) is a side effect. Despite its simplicity, the method we propose allows us to increase the digitalization of fractured regions and minimize the Courant number. This paper contains various comparisons of modeling results produced by the proposed method-based solver, and results produced by the well-known solver specfem2d, as well as previous modeling results for the same problems. The drawback of the method is that an interpolation error can worsen an overall model accuracy and reduce the computational schema order. Some countermeasures against it are described. For this paper, only two-dimensional models are analyzed. However, the method we propose can be applied to the three-dimensional problems with minimal adaptation required.
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Parallel embedded discrete fracture method for flows in fractured porous media
Computer Research and Modeling, 2021, v. 13, no. 4, pp. 735-745In this work, parallel method for solving single-phase flow problems in a fractured porous media is considered. Method is based on the representation of fractures by surfaces embedded into the computational mesh, and known as the embedded discrete fracture model. Porous medium and fractures are represented as two independent continua within the model framework. A distinctive feature of the considered approach is that fractures do not modify the computational grid, while an additional degree of freedom is introduced for each cell intersected by the fracture. Discretization of fluxes between fractures and porous medium continua uses the pre-calculated intersection characteristics of fracture surfaces with a three-dimensional computational grid. The discretization of fluxes inside a porous medium does not depend on flows between continua. This allows the model to be integrated into existing multiphase flow simulators in porous reservoirs, while accurately describing flow behaviour near fractures.
Previously, the author proposed monotonic modifications of the model using nonlinear finite-volume schemes for the discretization of the fluxes inside the porous medium: a monotonic two-point scheme or a compact multi-point scheme with a discrete maximum principle. It was proved that the discrete solution of the obtained nonlinear problem preserves non-negativity or satisfies the discrete maximum principle, depending on the choice of the discretization scheme.
This work is a continuation of previous studies. The previously proposed monotonic modification of the model was parallelized using the INMOST open-source software platform for parallel numerical modelling. We used such features of the INMOST as a balanced grid distribution among processors, scalable methods for solving sparse distributed systems of linear equations, and others. Parallel efficiency was demonstrated experimentally.
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Experimental comparison of PageRank vector calculation algorithms
Computer Research and Modeling, 2023, v. 15, no. 2, pp. 369-379Finding PageRank vector is of great scientific and practical interest due to its applicability to modern search engines. Despite the fact that this problem is reduced to finding the eigenvector of the stochastic matrix $P$, the need for new algorithms is justified by a large size of the input data. To achieve no more than linear execution time, various randomized methods have been proposed, returning the expected result only with some probability close enough to one. We will consider two of them by reducing the problem of calculating the PageRank vector to the problem of finding equilibrium in an antagonistic matrix game, which is then solved using the Grigoriadis – Khachiyan algorithm. This implementation works effectively under the assumption of sparsity of the input matrix. As far as we know, there are no successful implementations of neither the Grigoriadis – Khachiyan algorithm nor its application to the task of calculating the PageRank vector. The purpose of this paper is to fill this gap. The article describes an algorithm giving pseudocode and some details of the implementation. In addition, it discusses another randomized method of calculating the PageRank vector, namely, Markov chain Monte Carlo (MCMC), in order to compare the results of these algorithms on matrices with different values of the spectral gap. The latter is of particular interest, since the magnitude of the spectral gap strongly affects the convergence rate of MCMC and does not affect the other two approaches at all. The comparison was carried out on two types of generated graphs: chains and $d$-dimensional cubes. The experiments, as predicted by the theory, demonstrated the effectiveness of the Grigoriadis – Khachiyan algorithm in comparison with MCMC for sparse graphs with a small spectral gap value. The written code is publicly available, so everyone can reproduce the results themselves or use this implementation for their own needs. The work has a purely practical orientation, no theoretical results were obtained.
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Additive regularizarion of topic models with fast text vectorizartion
Computer Research and Modeling, 2020, v. 12, no. 6, pp. 1515-1528The probabilistic topic model of a text document collection finds two matrices: a matrix of conditional probabilities of topics in documents and a matrix of conditional probabilities of words in topics. Each document is represented by a multiset of words also called the “bag of words”, thus assuming that the order of words is not important for revealing the latent topics of the document. Under this assumption, the problem is reduced to a low-rank non-negative matrix factorization governed by likelihood maximization. In general, this problem is ill-posed having an infinite set of solutions. In order to regularize the solution, a weighted sum of optimization criteria is added to the log-likelihood. When modeling large text collections, storing the first matrix seems to be impractical, since its size is proportional to the number of documents in the collection. At the same time, the topical vector representation (embedding) of documents is necessary for solving many text analysis tasks, such as information retrieval, clustering, classification, and summarization of texts. In practice, the topical embedding is calculated for a document “on-the-fly”, which may require dozens of iterations over all the words of the document. In this paper, we propose a way to calculate a topical embedding quickly, by one pass over document words. For this, an additional constraint is introduced into the model in the form of an equation, which calculates the first matrix from the second one in linear time. Although formally this constraint is not an optimization criterion, in fact it plays the role of a regularizer and can be used in combination with other regularizers within the additive regularization framework ARTM. Experiments on three text collections have shown that the proposed method improves the model in terms of sparseness, difference, logLift and coherence measures of topic quality. The open source libraries BigARTM and TopicNet were used for the experiments.
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Parallel representation of local elimination algorithm for accelerating the solving sparse discrete optimization problems
Computer Research and Modeling, 2015, v. 7, no. 3, pp. 699-705Views (last year): 1.The decomposition algorithms provide approaches to deal with NP-hardness in solving discrete optimization problems (DOPs). In this article one of the promising ways to exploit sparse matrices — local elimination algorithm in parallel interpretation (LEAP) are demonstrated. That is a graph-based structural decomposition algorithm, which allows to compute a solution in stages such that each of them uses results from previous stages. At the same time LEAP heavily depends on elimination ordering which actually provides solving stages. Also paper considers tree- and block-parallel for LEAP and required realization process of it comparison of a several heuristics for obtaining a better elimination order and shows how is related graph structure, elimination ordering and solving time.
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