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Langevin Dynamics, Monte Carlo, and all-atom Molecular Dynamics simulations in implicit solvent require a reliable source of pseudorandom numbers generated at each step of calculation. We present the two main approaches for implementation of pseudorandom number generators on a GPU. In the first approach, inherent in CPU-based calculations, one PRNG produces a stream of pseudorandom numbers in each thread of execution, whereas the second approach builds on the ability of different threads to communicate, thus, sharing random seeds across the entire device. We exemplify the use of these approaches through the development of Ran2, Hybrid Taus, and Lagged Fibonacci algorithms. As an application-based test of randomness, we carry out LD simulations of N independent harmonic oscillators coupled to a stochastic thermostat. This model allows us to assess statistical quality of pseudorandom numbers. We also profile performance of these generators in terms of the computational time, memory usage, and the speedup factor (CPU/GPU time).

Isothermal electroconvection in a dielectric liquid arising in a plane-parallel electrode system due to unipolar injection of charges from the cathode is considered. Spatially periodic rolls structures stability is investigated.

The paper describes the results of computer simulation of time-dependent temperature fields arising in polar dielectrics irradiated by focused electron bunches with average electron energy when analyzing with electron microscopy techniques. The mathematical model was based on solving several-dimensional nonstationary heat conduction equation with use of numerical finite element method. The approximation of thermal source was performed taking into account the estimation of initial electron distribution determined by Monte-Carlo simulation of electron trajectories. The simulation program was designed in Matlab. The geometrical modeling and calculation results demonstrated the main features of model sample heating by electron beam were presented at the given experimental parameters as well as source approximation.

The Goodwin dynamical model under the random external disturbances is considered. A full parametrical analysis for equlibria and cycles of deterministic model is developed. We study probabilistic properties of stochastic attractors using stochastic sensitivity functions technique and numerical methods. A phenomenon of the generation of stochastic business cycles in the zones of stable equilibria is discussed.

The article is dedicated to mathematic modeling of natural water desalination process by method of thermal distillation. The article gives the equations which allow describing the processes of film flowing and boiling of water, steam condensation and vacuum maintenance. The article presents the algorithm of calculation, implemented in MatLab computer mathematic system and Excel electronic tables, and the initial data required for the calculation. The model has been checked for adequacy. The calculation of ten-effect distillation system is given. The results of work can be used in design and optimization of process conditions for distillation systems.

An algorithm of applied problem solving was described to calculate electrical characteristics of electrical field effects in ferroelectrics electron-beam charged. The algorithm was based on implementation of the deterministic model using finite element method as well as taking into account Monte-Carlo simulation results of electron transport. The program application was developed to perform computing experiments.

The paper considers models of platelet thrombus formation in blood plasma flow in a cylindrical vessel, based on the “advection–diffusion” equation and the Fokker–Planck equation. The comparison of the results of calculations based on these models is given. Considered models show qualitatively similar behavior at the initial stage of thrombus formation. А detailed investigation of large clots requires models’ improvement.

The adequate complexity three-dimensional finite element model of biomechanical system with space, shell and beam-type elements was built. The model includes the Ilizarov fixator and tibial bone’s simulator with the regenerating tissue at the fracture location. The proposed model allows us to specify the orthotropic elastic properties of tibial bone model in cortical and trabecular zones. It is also possible to change the basic geometrical and mechanical characteristics of biomechanical system, change the finite element mash density and define the different external loads, such as pressure on the bone and compression or distraction between the repositioned rings of Ilizarov device.

By using special APDL ANSYS program macros the mode of deformation was calculated in the fracture zone for various static loads on the simulator bone, for compression or distraction between the repositioned rings and for various mechanical properties during different stages of the bone regenerate formation (gelatinous, cartilaginous, trabecular and cortical bone remodeling). The obtained results allow us to estimate the permissible values of the external pressure on the bone and of the displacements of the Ilizarov fixator rings for different stages of the bone regeneration, based on the admittance criterion for the maximum of the stresses in the callus. The presented data can be used in a clinical condition for planning, realization and monitoring of the power modes for transosseous osteosynthesis with the external Ilizarov fixator.

Modeling semiregular precessions of the first type assuming the variability of the gyroscopic moment is made on the basis on the Kirchhoff-Poisson’s equations, that describe the motion of a gyrostat under the action of potential and gyroscopic forces. New classes of such motions of a gyrostat and their analytic properties are specified.

We present a semiphenomenological model of the two molecular motors: kinesin and myosin V, which play a great role in intracellular transport. The temporal dynamics of changes in the characteristic geometric parameters and the elastic stresses generated during the movement of motors is studied. The rates of movement of kinesin and myosin V, and their dependence on the concentration of ATP are discussed.