All issues
- 2024 Vol. 16
- 2023 Vol. 15
- 2022 Vol. 14
- 2021 Vol. 13
- 2020 Vol. 12
- 2019 Vol. 11
- 2018 Vol. 10
- 2017 Vol. 9
- 2016 Vol. 8
- 2015 Vol. 7
- 2014 Vol. 6
- 2013 Vol. 5
- 2012 Vol. 4
- 2011 Vol. 3
- 2010 Vol. 2
- 2009 Vol. 1
-
On the stochastic gradient descent matrix factorization in application to the supervised classification of microarrays
Computer Research and Modeling, 2013, v. 5, no. 2, pp. 131-140Citations: 4 (RSCI).Microarray datasets are highly dimensional, with a small number of collected samples in comparison to thousands of features. This poses a significant challenge that affects the interpretation, applicability and validation of the analytical results. Matrix factorizations have proven to be a useful method for describing data in terms of a small number of meta-features, which reduces noise, while still capturing the essential features of the data. Three novel and mutually relevant methods are presented in this paper: 1) gradient-based matrix factorization with two adaptive learning rates (in accordance with the number of factor matrices) and their automatic updates; 2) nonparametric criterion for the selection of the number of factors; and 3) nonnegative version of the gradient-based matrix factorization which doesn't require any extra computational costs in difference to the existing methods. We demonstrate effectiveness of the proposed methods to the supervised classification of gene expression data.
-
Mathematical model and computer analysis of tests for homogeneity of “dose–effect” dependence
Computer Research and Modeling, 2012, v. 4, no. 2, pp. 267-273Views (last year): 6.The given work is devoted to the comparison of two tests for homogeneity: chi-square test based on contingency tables of 2 × 2 and test for homogeneity based on asymptotic distributions of the summarized square error of a distribution function estimators in the model of ”dose–effect” dependence. The evaluation of test power is performed by means of computer simulation. In order to design efficiency functions the method of kernel regression estimator based on Nadaray–Watson estimator is used.
-
On one particular model of a mixture of the probability distributions in the radio measurements
Computer Research and Modeling, 2012, v. 4, no. 3, pp. 563-568Views (last year): 3. Citations: 7 (RSCI).This paper presents a model mixture of probability distributions of signal and noise. Typically, when analyzing the data under conditions of uncertainty it is necessary to use nonparametric tests. However, such an analysis of nonstationary data in the presence of uncertainty on the mean of the distribution and its parameters may be ineffective. The model involves the implementation of a case of a priori non-parametric uncertainty in the processing of the signal at a time when the separation of signal and noise are related to different general population, is feasible.
-
Changepoint detection in biometric data: retrospective nonparametric segmentation methods based on dynamic programming and sliding windows
Computer Research and Modeling, 2024, v. 16, no. 5, pp. 1295-1321This paper is dedicated to the analysis of medical and biological data obtained through locomotor training and testing of astronauts conducted both on Earth and during spaceflight. These experiments can be described as the astronaut’s movement on a treadmill according to a predefined regimen in various speed modes. During these modes, not only the speed is recorded but also a range of parameters, including heart rate, ground reaction force, and others, are collected. In order to analyze the dynamics of the astronaut’s condition over an extended period, it is necessary to perform a qualitative segmentation of their movement modes to independently assess the target metrics. This task becomes particularly relevant in the development of an autonomous life support system for astronauts that operates without direct supervision from Earth. The segmentation of target data is complicated by the presence of various anomalies, such as deviations from the predefined regimen, arbitrary and varying duration of mode transitions, hardware failures, and other factors. The paper includes a detailed review of several contemporary retrospective (offline) nonparametric methods for detecting multiple changepoints, which refer to sudden changes in the properties of the observed time series occurring at unknown moments. Special attention is given to algorithms and statistical measures that determine the homogeneity of the data and methods for detecting change points. The paper considers approaches based on dynamic programming and sliding window methods. The second part of the paper focuses on the numerical modeling of these methods using characteristic examples of experimental data, including both “simple” and “complex” speed profiles of movement. The analysis conducted allowed us to identify the preferred methods, which will be further evaluated on the complete dataset. Preference is given to methods that ensure the closeness of the markup to a reference one, potentially allow the detection of both boundaries of transient processes, as well as are robust relative to internal parameters.
Indexed in Scopus
Full-text version of the journal is also available on the web site of the scientific electronic library eLIBRARY.RU
The journal is included in the Russian Science Citation Index
The journal is included in the RSCI
International Interdisciplinary Conference "Mathematics. Computing. Education"