All issues

We consider a model of spontaneous formation of a computational structure in the human brain for solving a given class of tasks in the process of performing a series of similar tasks. The model is based on a special definition of a numerical measure of the complexity of the solution algorithm. This measure has an informational property: the complexity of a computational structure consisting of two independent structures is equal to the sum of the complexities of these structures. Then the probability of spontaneous occurrence of the structure depends exponentially on the complexity of the structure. The exponential coefficient requires experimental determination for each type of problem. It may depend on the form of presentation of the source data and the procedure for issuing the result. This estimation method was applied to the results of a series of experiments that determined the strategy for solving a series of similar problems with a growing number of initial data. These experiments were described in previously published papers. Two main strategies were considered: sequential execution of the computational algorithm, or the use of parallel computing in those tasks where it is effective. These strategies differ in how calculations are performed. Using an estimate of the complexity of schemes, you can use the empirical probability of one of the strategies to calculate the probability of the other. The calculations performed showed a good match between the calculated and empirical probabilities. This confirms the hypothesis about the spontaneous formation of structures that solve the problem during the initial training of a person. The paper contains a brief description of experiments, detailed computational schemes and a strict definition of the complexity measure of computational structures and the conclusion of the dependence of the probability of structure formation on its complexity.

The paper deals with a heat wave motion problem for a degenerate second-order nonlinear parabolic equation with power nonlinearity. The considered boundary condition specifies in a plane the motion equation of the circular zero front of the heat wave. A new numerical-analytical algorithm for solving the problem is proposed. A solution is constructed stepby- step in time using difference time discretization. At each time step, a boundary value problem for the Poisson equation corresponding to the original equation at a fixed time is considered. This problem is, in fact, an inverse Cauchy problem in the domain whose initial boundary is free of boundary conditions and two boundary conditions (Neumann and Dirichlet) are specified on a current boundary (heat wave). A solution of this problem is constructed as the sum of a particular solution to the nonhomogeneous Poisson equation and a solution to the corresponding Laplace equation satisfying the boundary conditions. Since the inhomogeneity depends on the desired function and its derivatives, an iterative solution procedure is used. The particular solution is sought by the collocation method using inhomogeneity expansion in radial basis functions. The inverse Cauchy problem for the Laplace equation is solved by the null field method as applied to a circular domain with a circular hole. This method is used for the first time to solve such problem. The calculation algorithm is optimized by parallelizing the computations. The parallelization of the computations allows us to realize effectively the algorithm on high performance computing servers. The algorithm is implemented as a program, which is parallelized by using the OpenMP standard for the C++ language, suitable for calculations with parallel cycles. The effectiveness of the algorithm and the robustness of the program are tested by the comparison of the calculation results with the known exact solution as well as with the numerical solution obtained earlier by the authors with the use of the boundary element method. The implemented computational experiment shows good convergence of the iteration processes and higher calculation accuracy of the proposed new algorithm than of the previously developed one. The solution analysis allows us to select the radial basis functions which are most suitable for the proposed algorithm.

Modern GPUs are massively-parallel processors, offering substantial amount of computational power in energy-efficient package. We discuss the benefits of utilizing this computing power for modeling problems in bio-informatics, such as molecular dynamics, quantum chemistry and sequence analysis.

А discrete element model is applied to the problem of a spherical projectile penetration into a massive obstacle. According to the model both indenter and obstacle are described by a set of densely packed particles. To model the interaction between the particles the two-parameter Lennard–Jones potential is used. Computer implementation of the model has been carried out using parallelism on GPUs, which resulted in high spatial — temporal resolution. Based on the comparison of the results of numerical simulation with experimental data the binding energy has been identified as a function of the dynamic hardness of materials. It is shown that the use of this approach allows to accurately describe the penetration process in the range of projectile velocities 500–2500 m/c.

The transfer of Big Data over computer network is important and unavoidable operation in the past, now and in any feasible future. There are a number of methods to transfer the data over computer global network (Internet) with a range of tools. In this paper the transfer of one piece of Big Data from one point in the Internet to another point in Internet in general over long range distance: many thousands kilometers. Several free of charge systems to transfer the Big Data are analyzed here. The most important architecture features are emphasized and suggested idea to add SDN Openflow protocol technique for fine tuning the data transfer over several parallel data links.

The application of a conservative numerical method of fluxes is examined for studying the vortex structures in the massive, fast-turned compact astrophysical objects, which are in self-gravity conditions. The simulation is accomplished for the objects with different mass and rotational speed. The pictures of the vortex structure of objects are visualized. In the calculations the gas-dynamic model is used, in which gas is accepted perfected and nonviscous. Numerical procedure is based on the finite-difference approximation of the conservation laws of the additive characteristics of medium for the finite volume. The “upwind” approximations of the densities of distribution of mass, components of momentum and total energy are applied. For the simulation of the objects, which possess fast-spin motion, the control of conservation for the component of moment of momentun is carried out during calculation. Evolutionary calculation is carried out on the basis of the parallel algorithms, realized on the computer complex of cluster architecture. Algorithms are based on the standardized system of message transfer Message Passing Interface (MPI). The blocking procedures of exchange and non-blocking procedures of exchange with control of the completion of operation are used. The parallelization on the space in two or three directions is carried out depending on the size of integration area and parameters of computational grid. For each subarea the parallelization based on the physical factors is carried out also: the calculations of gas dynamics part and gravitational forces are realized on the different processors, that allows to raise the efficiency of algorithms. The real possibility of the direct calculation of gravitational forces by means of the summation of interaction between all finite volumes in the integration area is shown. For the finite volume methods this approach seems to more consecutive than the solution of Poisson’s equation for the gravitational potential. Numerical calculations were carried out on the computer complex of cluster architecture with the peak productivity 523 TFlops. In the calculations up to thousand processors was used.

The paper provides the mathematical and numerical models of the interrelated thermo- and hydrodynamic processes in the operational mode of development the unified oil-producing complex during the hydrogel flooding of the non-uniform oil reservoir exploited with a system of arbitrarily located injecting wells and producing wells equipped with submersible multistage electrical centrifugal pumps. A special feature of our approach is the modeling of the special ground-based equipment operation (control stations of submersible pumps, drossel devices on the head of producing wells), designed to regulate the operation modes of both the whole complex and its individual elements.

The complete differential model includes equations governing non-stationary two-phase five-component filtration in the reservoir, quasi-stationary heat and mass transfer in the wells and working channels of pumps. Special non-linear boundary conditions and dependencies simulate, respectively, the influence of the drossel diameter on the flow rate and pressure at the wellhead of each producing well and the frequency electric current on the performance characteristics of the submersible pump unit. Oil field development is also regulated by the change in bottom-hole pressure of each injection well, concentration of the gel-forming components pumping into the reservoir, their total volume and duration of injection. The problem is solved numerically using conservative difference schemes constructed on the base of the finite difference method, and developed iterative algorithms oriented on the parallel computing technologies. Numerical model is implemented in a software package which can be considered as the «Intellectual System of Wells» for the virtual control the oil field development.

The article presented the computational algorithm developed to study chemical processes in the internal flows of a multicomponent gas under the influence of laser radiation. The mathematical model is the gas dynamics’ equations with chemical reactions at low Mach numbers. It takes into account dissipative terms that describe the dynamics of a viscous heat-conducting medium with diffusion, chemical reactions and energy supply by laser radiation. This mathematical model is characterized by the presence of several very different time and spatial scales. The computational algorithm is based on a splitting scheme by physical processes. Each time integration step is divided into the following blocks: solving the equations of chemical kinetics, solving the equation for the radiation intensity, solving the convection-diffusion equations, calculating the dynamic component of pressure and calculating the correction of the velocity vector. The solution of a stiff system of chemical kinetics equations is carried out using a specialized explicit second-order accuracy scheme or a plug-in RADAU5 module. Numerical Rusanov flows and a WENO scheme of an increased order of approximation are used to find convective terms in the equations. The code based on the obtained algorithm has been developed using MPI parallel computing technology. The developed code is used to calculate the pyrolysis of ethane with radical reactions. The superequilibrium concentrations’ formation of radicals in the reactor volume is studied in detail. Numerical simulation of the reaction gas flow in a flat tube with laser radiation supply is carried out, which is in demand for the interpretation of experimental results. It is shown that laser radiation significantly increases the conversion of ethane and yields of target products at short lengths closer to the entrance to the reaction zone. Reducing the effective length of the reaction zone allows us to offer new solutions in the design of ethane conversion reactors into valuable hydrocarbons. The developed algorithm and program will find their application in the creation of new technologies of laser thermochemistry.

The aim of research is to develop software system for solving gas dynamic problem in multiply connected integration domains of regular shape by high-performance computing system. Comparison of the various technologies of parallel computing has been done. The program complex is implemented using multithreaded parallel systems to organize both multi-core and massively parallel calculation. The comparison of numerical results with known model problems solutions has been done. Research of performance of different computing platforms has been done.

Complex geometric organization of subcellular structures such as photosynthetic or mitochondrial membranes determines mechanism of electron and proton transfer processes. We propose new approach in modeling processes, where geometric shape of membranes is accurately taken into account. Different stages of charge transfer process are simulated using different approaches, which are integrated into a combined model. We implemented this model as software which utilizes parallel computations on high-performance clusters and GPUs for better performance.