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Image classification based on deep learning with automatic relevance determination and structured Bayesian pruning
Computer Research and Modeling, 2024, v. 16, no. 4, pp. 927-938Deep learning’s power stems from complex architectures; however, these can lead to overfitting, where models memorize training data and fail to generalize to unseen examples. This paper proposes a novel probabilistic approach to mitigate this issue. We introduce two key elements: Truncated Log-Uniform Prior and Truncated Log-Normal Variational Approximation, and Automatic Relevance Determination (ARD) with Bayesian Deep Neural Networks (BDNNs). Within the probabilistic framework, we employ a specially designed truncated log-uniform prior for noise. This prior acts as a regularizer, guiding the learning process towards simpler solutions and reducing overfitting. Additionally, a truncated log-normal variational approximation is used for efficient handling of the complex probability distributions inherent in deep learning models. ARD automatically identifies and removes irrelevant features or weights within a model. By integrating ARD with BDNNs, where weights have a probability distribution, we achieve a variational bound similar to the popular variational dropout technique. Dropout randomly drops neurons during training, encouraging the model not to rely heavily on any single feature. Our approach with ARD achieves similar benefits without the randomness of dropout, potentially leading to more stable training.
To evaluate our approach, we have tested the model on two datasets: the Canadian Institute For Advanced Research (CIFAR-10) for image classification and a dataset of Macroscopic Images of Wood, which is compiled from multiple macroscopic images of wood datasets. Our method is applied to established architectures like Visual Geometry Group (VGG) and Residual Network (ResNet). The results demonstrate significant improvements. The model reduced overfitting while maintaining, or even improving, the accuracy of the network’s predictions on classification tasks. This validates the effectiveness of our approach in enhancing the performance and generalization capabilities of deep learning models.
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Computer aided analysis of medical image recognition for example of scintigraphy
Computer Research and Modeling, 2016, v. 8, no. 3, pp. 541-548Views (last year): 3. Citations: 3 (RSCI).The practical application of nuclear medicine demonstrates the continued information deficiency of the algorithms and programs that provide visualization and analysis of medical images. The aim of the study was to determine the principles of optimizing the processing of planar osteostsintigraphy on the basis of сomputer aided diagnosis (CAD) for analysis of texture descriptions of images of metastatic zones on planar scintigrams of skeleton. A computer-aided diagnosis system for analysis of skeletal metastases based on planar scintigraphy data has been developed. This system includes skeleton image segmentation, calculation of textural, histogram and morphometrical parameters and the creation of a training set. For study of metastatic images’ textural characteristics on planar scintigrams of skeleton was developed the computer program of automatic analysis of skeletal metastases is used from data of planar scintigraphy. Also expert evaluation was used to distinguishing ‘pathological’ (metastatic) from ‘physiological’ (non-metastatic) radiopharmaceutical hyperfixation zones in which Haralick’s textural features were determined: autocorrelation, contrast, ‘forth moment’ and heterogeneity. This program was established on the principles of сomputer aided diagnosis researches planar scintigrams of skeletal patients with metastatic breast cancer hearths hyperfixation of radiopharmaceuticals were identified. Calculated parameters were made such as brightness, smoothness, the third moment of brightness, brightness uniformity, entropy brightness. It has been established that in most areas of the skeleton of histogram values of parameters in pathologic hyperfixation of radiopharmaceuticals predominate over the same values in the physiological. Most often pathological hyperfixation of radiopharmaceuticals as the front and rear fixed scintigramms prevalence of brightness and smoothness of the image brightness in comparison with those of the physiological hyperfixation of radiopharmaceuticals. Separate figures histogram analysis can be used in specifying the diagnosis of metastases in the mathematical modeling and interpretation bone scintigraphy. Separate figures histogram analysis can be used in specifying the diagnosis of metastases in the mathematical modeling and interpretation bone scintigraphy.
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Traffic flow speed prediction on transportation graph with convolutional neural networks
Computer Research and Modeling, 2018, v. 10, no. 3, pp. 359-367Views (last year): 36.The short-term prediction of road traffic condition is one of the main tasks of transportation modelling. The main purpose of which are traffic control, reporting of accidents, avoiding traffic jams due to knowledge of traffic flow and subsequent transportation planning. A number of solutions exist — both model-driven and data driven had proven to be successful in capturing the dynamics of traffic flow. Nevertheless, most space-time models suffer from high mathematical complexity and low efficiency. Artificial Neural Networks, one of the prominent datadriven approaches, show promising performance in modelling the complexity of traffic flow. We present a neural network architecture for traffic flow prediction on a real-world road network graph. The model is based on the combination of a recurrent neural network and graph convolutional neural network. Where a recurrent neural network is used to model temporal dependencies, and a convolutional neural network is responsible for extracting spatial features from traffic. To make multiple few steps ahead predictions, the encoder-decoder architecture is used, which allows to reduce noise propagation due to inexact predictions. To model the complexity of traffic flow, we employ multilayered architecture. Deeper neural networks are more difficult to train. To speed up the training process, we use skip-connections between each layer, so that each layer teaches only the residual function with respect to the previous layer outputs. The resulting neural network was trained on raw data from traffic flow detectors from the US highway system with a resolution of 5 minutes. 3 metrics: mean absolute error, mean relative error, mean-square error were used to estimate the quality of the prediction. It was found that for all metrics the proposed model achieved lower prediction error than previously published models, such as Vector Auto Regression, LSTM and Graph Convolution GRU.
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Neuro-fuzzy model of fuzzy rules formation for objects state evaluation in conditions of uncertainty
Computer Research and Modeling, 2019, v. 11, no. 3, pp. 477-492Views (last year): 12.This article solves the problem of constructing a neuro-fuzzy model of fuzzy rules formation and using them for objects state evaluation in conditions of uncertainty. Traditional mathematical statistics or simulation modeling methods do not allow building adequate models of objects in the specified conditions. Therefore, at present, the solution of many problems is based on the use of intelligent modeling technologies applying fuzzy logic methods. The traditional approach of fuzzy systems construction is associated with an expert attraction need to formulate fuzzy rules and specify the membership functions used in them. To eliminate this drawback, the automation of fuzzy rules formation, based on the machine learning methods and algorithms, is relevant. One of the approaches to solve this problem is to build a fuzzy neural network and train it on the data characterizing the object under study. This approach implementation required fuzzy rules type choice, taking into account the processed data specificity. In addition, it required logical inference algorithm development on the rules of the selected type. The algorithm steps determine the number and functionality of layers in the fuzzy neural network structure. The fuzzy neural network training algorithm developed. After network training the formation fuzzyproduction rules system is carried out. Based on developed mathematical tool, a software package has been implemented. On its basis, studies to assess the classifying ability of the fuzzy rules being formed have been conducted using the data analysis example from the UCI Machine Learning Repository. The research results showed that the formed fuzzy rules classifying ability is not inferior in accuracy to other classification methods. In addition, the logic inference algorithm on fuzzy rules allows successful classification in the absence of a part of the initial data. In order to test, to solve the problem of assessing oil industry water lines state fuzzy rules were generated. Based on the 303 water lines initial data, the base of 342 fuzzy rules was formed. Their practical approbation has shown high efficiency in solving the problem.
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Quantitative analysis of “structure – anticancer activity” and rational molecular design of bi-functional VEGFR-2/HDAC-inhibitors
Computer Research and Modeling, 2019, v. 11, no. 5, pp. 911-930Inhibitors of histone deacetylases (HDACi) have considered as a promising class of drugs for the treatment of cancers because of their effects on cell growth, differentiation, and apoptosis. Angiogenesis play an important role in the growth of most solid tumors and the progression of metastasis. The vascular endothelial growth factor (VEGF) is a key angiogenic agent, which is secreted by malignant tumors, which induces the proliferation and the migration of vascular endothelial cells. Currently, the most promising strategy in the fight against cancer is the creation of hybrid drugs that simultaneously act on several physiological targets. In this work, a series of hybrids bearing N-phenylquinazolin-4-amine and hydroxamic acid moieties were studied as dual VEGFR-2/HDAC inhibitors using simplex representation of the molecular structure and Support Vector Machine (SVM). The total sample of 42 compounds was divided into training and test sets. Five-fold cross-validation (5-fold) was used for internal validation. Satisfactory quantitative structure—activity relationship (QSAR) models were constructed (R2test = 0.64–0.87) for inhibitors of HDAC, VEGFR-2 and human breast cancer cell line MCF-7. The interpretation of the obtained QSAR models was carried out. The coordinated effect of different molecular fragments on the increase of antitumor activity of the studied compounds was estimated. Among the substituents of the N-phenyl fragment, the positive contribution of para bromine for all three types of activity can be distinguished. The results of the interpretation were used for molecular design of potential dual VEGFR-2/HDAC inhibitors. For comparative QSAR research we used physicochemical descriptors calculated by the program HYBOT, the method of Random Forest (RF), and on-line version of the expert system OCHEM (https://ochem.eu). In the modeling of OCHEM PyDescriptor descriptors and extreme gradient boosting was chosen. In addition, the models obtained with the help of the expert system OCHEM were used for virtual screening of 300 compounds to select promising VEGFR-2/HDAC inhibitors for further synthesis and testing.
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Tracking on the BESIII CGEM inner detector using deep learning
Computer Research and Modeling, 2020, v. 12, no. 6, pp. 1361-1381The reconstruction of charged particle trajectories in tracking detectors is a key problem in the analysis of experimental data for high energy and nuclear physics.
The amount of data in modern experiments is so large that classical tracking methods such as Kalman filter can not process them fast enough. To solve this problem, we have developed two neural network algorithms of track recognition, based on deep learning architectures, for local (track by track) and global (all tracks in an event) tracking in the GEM tracker of the BM@N experiment at JINR (Dubna). The advantage of deep neural networks is the ability to detect hidden nonlinear dependencies in data and the capability of parallel execution of underlying linear algebra operations.
In this work we generalize these algorithms to the cylindrical GEM inner tracker of BESIII experiment. The neural network model RDGraphNet for global track finding, based on the reverse directed graph, has been successfully adapted. After training on Monte Carlo data, testing showed encouraging results: recall of 98% and precision of 86% for track finding.
The local neural network model TrackNETv2 was also adapted to BESIII CGEM successfully. Since the tracker has only three detecting layers, an additional neuro-classifier to filter out false tracks have been introduced. Preliminary tests demonstrated the recall value at the first stage of 99%. After applying the neuro-classifier, the precision was 77% with a slight decrease of the recall to 94%. This result can be improved after the further model optimization.
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Approaches for image processing in the decision support system of the center for automated recording of administrative offenses of the road traffic
Computer Research and Modeling, 2021, v. 13, no. 2, pp. 405-415We suggested some approaches for solving image processing tasks in the decision support system (DSS) of the Center for Automated Recording of Administrative Offenses of the Road Traffic (CARAO). The main task of this system is to assist the operator in obtaining accurate information about the vehicle registration plate and the vehicle brand/model based on images obtained from the photo and video recording systems. We suggested the approach for vehicle registration plate recognition and brand/model classification on the images based on modern neural network models. LPRNet neural network model supplemented by Spatial Transformer Layer was used to recognize the vehicle registration plate. The ResNeXt-101-32x8d neural network model was used to classify for vehicle brand/model. We suggested the approach to construct the training set for the neural network of vehicle registration plate recognition. The approach is based on computer vision methods and machine learning algorithms. The SIFT algorithm was used to detect and describe local features on images with the vehicle registration plate. DBSCAN clustering was used to detect and delete outliers in such local features. The accuracy of vehicle registration plate recognition was 96% on the testing set. We suggested the approach to improve the efficiency of using the ResNeXt-101-32x8d model at additional training and classification stages. The approach is based on the new architecture of convolutional neural networks with “freezing” weight coefficients of convolutional layers, an additional convolutional layer for parallelizing the classification process, and a set of binary classifiers at the output. This approach significantly reduced the time of additional training of neural network when new vehicle brand/model classification was needed. The final accuracy of vehicle brand/model classification was 99% on the testing set. The proposed approaches were tested and implemented in the DSS of the CARAO of the Republic of Tatarstan.
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Data-driven simulation of a two-phase flow in heterogenous porous media
Computer Research and Modeling, 2021, v. 13, no. 4, pp. 779-792The numerical methods used to simulate the evolution of hydrodynamic systems require the considerable use of computational resources thus limiting the number of possible simulations. The data-driven simulation technique is one promising approach to the development of heuristic models, which may speed up the study of such models. In this approach, machine learning methods are used to tune the weights of an artificial neural network that predicts the state of a physical system at a given point in time based on initial conditions. This article describes an original neural network architecture and a novel multi-stage training procedure which create a heuristic model of a two-phase flow in a heterogeneous porous medium. The neural network-based model predicts the states of the grid cells at an arbitrary timestep (within the known constraints), taking in only the initial conditions: the properties of the heterogeneous permeability of the medium and the location of sources and sinks. The proposed model requires orders of magnitude less processor time in comparison with the classical numerical method, which served as a criterion for evaluating the effectiveness of the trained model. The proposed architecture includes a number of subnets trained in various combinations on several datasets. The techniques of adversarial training and weight transfer are utilized.
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Simple behavioral model of imprint formation
Computer Research and Modeling, 2014, v. 6, no. 5, pp. 793-802Views (last year): 5. Citations: 2 (RSCI).Formation of adequate behavioral patterns in condition of the unknown environment carried out through exploratory behavior. At the same time the rapid formation of an acceptable pattern is more preferable than a long elaboration perfect pattern through repeat play learning situation. In extreme situations, phenomenon of imprinting is observed — instant imprinting of behavior pattern, which ensure the survival of individuals. In this paper we propose a hypothesis and imprint model when trained on a single successful pattern of virtual robot's neural network demonstrates the effective functioning. Realism of the model is estimated by checking the stability of playback behavior pattern to perturbations situation imprint run.
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Mathematical model of respiratory regulation during hypoxia and hypercapnia
Computer Research and Modeling, 2017, v. 9, no. 2, pp. 297-310Views (last year): 16.Transport of respiratory gases by respiratory and circulatory systems is one of the most important processes associated with living conditions of the human body. Significant and/or long-term deviations of oxygen and carbon dioxide concentrations from the normal values in blood can be a reason of significant pathological changes with irreversible consequences: lack of oxygen (hypoxia and ischemic events), the change in the acidbase balance of blood (acidosis or alkalosis), and others. In the context of a changing external environment and internal conditions of the body the action of its regulatory systems aimed at maintaining homeostasis. One of the major mechanisms for maintaining concentrations (partial pressures) of oxygen and carbon dioxide in the blood at a normal level is the regulation of minute ventilation, respiratory rate and depth of respiration, which is caused by the activity of the central and peripheral regulators.
In this paper we propose a mathematical model of the regulation of pulmonary ventilation parameter. The model is used to calculate the minute ventilation adaptation during hypoxia and hypercapnia. The model is developed using a single-component model of the lungs, and biochemical equilibrium conditions of oxygen and carbon dioxide in the blood and the alveolar lung volume. A comparison with laboratory data is performed during hypoxia and hypercapnia. Analysis of the results shows that the model reproduces the dynamics of minute ventilation during hypercapnia with sufficient accuracy. Another result is that more accurate model of regulation of minute ventilation during hypoxia should be developed. The factors preventing from satisfactory accuracy are analysed in the final section.
Respiratory function is one of the main limiting factors of the organism during intense physical activities. Thus, it is important characteristic of high performance sport and extreme physical activity conditions. Therefore, the results of this study have significant application value in the field of mathematical modeling in sport. The considered conditions of hypoxia and hypercapnia are partly reproduce training at high altitude and at hypoxia conditions. The purpose of these conditions is to increase the level of hemoglobin in the blood of highly qualified athletes. These conditions are the only admitted by sport committees.
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International Interdisciplinary Conference "Mathematics. Computing. Education"