Результаты поиска по 'characteristics':
Найдено статей: 216
  1. Ablaev S.S., Makarenko D.V., Stonyakin F.S., Alkousa M.S., Baran I.V.
    Subgradient methods for non-smooth optimization problems with some relaxation of sharp minimum
    Computer Research and Modeling, 2022, v. 14, no. 2, pp. 473-495

    Non-smooth optimization often arises in many applied problems. The issues of developing efficient computational procedures for such problems in high-dimensional spaces are very topical. First-order methods (subgradient methods) are well applicable here, but in fairly general situations they lead to low speed guarantees for large-scale problems. One of the approaches to this type of problem can be to identify a subclass of non-smooth problems that allow relatively optimistic results on the rate of convergence. For example, one of the options for additional assumptions can be the condition of a sharp minimum, proposed in the late 1960s by B. T. Polyak. In the case of the availability of information about the minimal value of the function for Lipschitz-continuous problems with a sharp minimum, it turned out to be possible to propose a subgradient method with a Polyak step-size, which guarantees a linear rate of convergence in the argument. This approach made it possible to cover a number of important applied problems (for example, the problem of projecting onto a convex compact set). However, both the condition of the availability of the minimal value of the function and the condition of a sharp minimum itself look rather restrictive. In this regard, in this paper, we propose a generalized condition for a sharp minimum, somewhat similar to the inexact oracle proposed recently by Devolder – Glineur – Nesterov. The proposed approach makes it possible to extend the class of applicability of subgradient methods with the Polyak step-size, to the situation of inexact information about the value of the minimum, as well as the unknown Lipschitz constant of the objective function. Moreover, the use of local analogs of the global characteristics of the objective function makes it possible to apply the results of this type to wider classes of problems. We show the possibility of applying the proposed approach to strongly convex nonsmooth problems, also, we make an experimental comparison with the known optimal subgradient method for such a class of problems. Moreover, there were obtained some results connected to the applicability of the proposed technique to some types of problems with convexity relaxations: the recently proposed notion of weak $\beta$-quasi-convexity and ordinary quasiconvexity. Also in the paper, we study a generalization of the described technique to the situation with the assumption that the $\delta$-subgradient of the objective function is available instead of the usual subgradient. For one of the considered methods, conditions are found under which, in practice, it is possible to escape the projection of the considered iterative sequence onto the feasible set of the problem.

  2. Golubev V.I., Shevchenko A.V., Petrov I.B.
    Raising convergence order of grid-characteristic schemes for 2D linear elasticity problems using operator splitting
    Computer Research and Modeling, 2022, v. 14, no. 4, pp. 899-910

    The grid-characteristic method is successfully used for solving hyperbolic systems of partial differential equations (for example, transport / acoustic / elastic equations). It allows to construct correctly algorithms on contact boundaries and boundaries of the integration domain, to a certain extent to take into account the physics of the problem (propagation of discontinuities along characteristic curves), and has the property of monotonicity, which is important for considered problems. In the cases of two-dimensional and three-dimensional problems the method makes use of a coordinate splitting technique, which enables us to solve the original equations by solving several one-dimensional ones consecutively. It is common to use up to 3-rd order one-dimensional schemes with simple splitting techniques which do not allow for the convergence order to be higher than two (with respect to time). Significant achievements in the operator splitting theory were done, the existence of higher-order schemes was proved. Its peculiarity is the need to perform a step in the opposite direction in time, which gives rise to difficulties, for example, for parabolic problems.

    In this work coordinate splitting of the 3-rd and 4-th order were used for the two-dimensional hyperbolic problem of the linear elasticity. This made it possible to increase the final convergence order of the computational algorithm. The paper empirically estimates the convergence in L1 and L∞ norms using analytical solutions of the system with the sufficient degree of smoothness. To obtain objective results, we considered the cases of longitudinal and transverse plane waves propagating both along the diagonal of the computational cell and not along it. Numerical experiments demonstrated the improved accuracy and convergence order of constructed schemes. These improvements are achieved with the cost of three- or fourfold increase of the computational time (for the 3-rd and 4-th order respectively) and no additional memory requirements. The proposed improvement of the computational algorithm preserves the simplicity of its parallel implementation based on the spatial decomposition of the computational grid.

  3. Nikitiuk A.S.
    Parameter identification of viscoelastic cell models based on force curves and wavelet transform
    Computer Research and Modeling, 2023, v. 15, no. 6, pp. 1653-1672

    Mechanical properties of eukaryotic cells play an important role in life cycle conditions and in the development of pathological processes. In this paper we discuss the problem of parameters identification and verification of viscoelastic constitutive models based on force spectroscopy data of living cells. It is proposed to use one-dimensional continuous wavelet transform to calculate the relaxation function. Analytical calculations and the results of numerical simulation are given, which allow to obtain relaxation functions similar to each other on the basis of experimentally determined force curves and theoretical stress-strain relationships using wavelet differentiation algorithms. Test examples demonstrating correctness of software implementation of the proposed algorithms are analyzed. The cell models are considered, on the example of which the application of the proposed procedure of identification and verification of their parameters is demonstrated. Among them are a structural-mechanical model with parallel connected fractional elements, which is currently the most adequate in terms of compliance with atomic force microscopy data of a wide class of cells, and a new statistical-thermodynamic model, which is not inferior in descriptive capabilities to models with fractional derivatives, but has a clearer physical meaning. For the statistical-thermodynamic model, the procedure of its construction is described in detail, which includes the following. Introduction of a structural variable, the order parameter, to describe the orientation properties of the cell cytoskeleton. Setting and solving the statistical problem for the ensemble of actin filaments of a representative cell volume with respect to this variable. Establishment of the type of free energy depending on the order parameter, temperature and external load. It is also proposed to use an oriented-viscous-elastic body as a model of a representative element of the cell. Following the theory of linear thermodynamics, evolutionary equations describing the mechanical behavior of the representative volume of the cell are obtained, which satisfy the basic thermodynamic laws. The problem of optimizing the parameters of the statisticalthermodynamic model of the cell, which can be compared both with experimental data and with the results of simulations based on other mathematical models, is also posed and solved. The viscoelastic characteristics of cells are determined on the basis of comparison with literature data.

  4. Yakushevich L.V., Ryasik A.A.
    Dynamical characteristics of DNA kinks and antikinks
    Computer Research and Modeling, 2012, v. 4, no. 1, pp. 209-217

    In this article in the frameworks of the sine-Gordon mode we have calculated the dynamical characteristics of kinks and antikinks activated in the homogeneous polynucleotide chains each if them contains only one of the types of the bases: adenines, thymines, guanines or cytosines. We have obtained analytical formulas and constructed the graphs for the kink and antikink profiles and for their energy density in the 2D- and 3D-dimension. Mass of kinks and antikinks, their energy of rest and their size have been estimated. The trajectories of kink and antikink motion in the phase space have been calculated in the 2D- and 3D-dimension.

    Views (last year): 2. Citations: 7 (RSCI).
  5. Zhmurov A.A., Alekseenko A.E., Barsegov V.A., Kononova O.G., Kholodov Y.A.
    Phase transition from α-helices to β-sheets in supercoils of fibrillar proteins
    Computer Research and Modeling, 2013, v. 5, no. 4, pp. 705-725

    The transition from α-helices to β-strands under external mechanical force in fibrin molecule containing coiled-coils is studied and free energy landscape is resolved. The detailed theoretical modeling of each stage of coiled-coils fragment pulling process was performed. The plots of force (F) as a function of molecule expansion (X) for two symmetrical fibrin coiled-coils (each ∼17 nm in length) show three distinct modes of mechanical behaviour: (1) linear (elastic) mode when coiled-coils behave like entropic springs (F<100−125 pN and X<7−8 nm), (2) viscous (plastic) mode when molecule resistance force does not increase with increase in elongation length (F≈150 pN and X≈10−35 nm) and (3) nonlinear mode (F>175−200 pN and X>40−50 nm). In linear mode the coiled-coils unwind at 2π radian angle, but no structural transition occurs. Viscous mode is characterized by the phase transition from the triple α-spirals to three-stranded parallel β-sheet. The critical tension of α-helices is 0.25 nm per turn, and the characteristic energy change is equal to 4.9 kcal/mol. Changes in internal energy Δu, entropy Δs and force capacity cf per one helical turn for phase transition were also computed. The observed dynamic behavior of α-helices and phase transition from α-helices to β-sheets under tension might represent a universal mechanism of regulation of fibrillar protein structures subject to mechanical stresses due to biological forces.

    Views (last year): 6. Citations: 1 (RSCI).
  6. Vassilevski Y.V., Simakov S.S., Gamilov T.M., Salamatova V.Yu., Dobroserdova T.K., Kopytov G.V., Bogdanov O.N., Danilov A.A., Dergachev M.A., Dobrovolskii D.D., Kosukhin O.N., Larina E.V., Meleshkina A.V., Mychka E.Yu., Kharin V.Yu., Chesnokova K.V., Shipilov A.A.
    Personalization of mathematical models in cardiology: obstacles and perspectives
    Computer Research and Modeling, 2022, v. 14, no. 4, pp. 911-930

    Most biomechanical tasks of interest to clinicians can be solved only using personalized mathematical models. Such models allow to formalize and relate key pathophysiological processes, basing on clinically available data evaluate non-measurable parameters that are important for the diagnosis of diseases, predict the result of a therapeutic or surgical intervention. The use of models in clinical practice imposes additional restrictions: clinicians require model validation on clinical cases, the speed and automation of the entire calculated technological chain, from processing input data to obtaining a result. Limitations on the simulation time, determined by the time of making a medical decision (of the order of several minutes), imply the use of reduction methods that correctly describe the processes under study within the framework of reduced models or machine learning tools.

    Personalization of models requires patient-oriented parameters, personalized geometry of a computational domain and generation of a computational mesh. Model parameters are estimated by direct measurements, or methods of solving inverse problems, or methods of machine learning. The requirement of personalization imposes severe restrictions on the number of fitted parameters that can be measured under standard clinical conditions. In addition to parameters, the model operates with boundary conditions that must take into account the patient’s characteristics. Methods for setting personalized boundary conditions significantly depend on the clinical setting of the problem and clinical data. Building a personalized computational domain through segmentation of medical images and generation of the computational grid, as a rule, takes a lot of time and effort due to manual or semi-automatic operations. Development of automated methods for setting personalized boundary conditions and segmentation of medical images with the subsequent construction of a computational grid is the key to the widespread use of mathematical modeling in clinical practice.

    The aim of this work is to review our solutions for personalization of mathematical models within the framework of three tasks of clinical cardiology: virtual assessment of hemodynamic significance of coronary artery stenosis, calculation of global blood flow after hemodynamic correction of complex heart defects, calculating characteristics of coaptation of reconstructed aortic valve.

  7. Zhdanova O.L., Neverova G.P., Frisman E.Y.
    Modeling the dynamics of plankton community considering the trophic characteristics of zooplankton
    Computer Research and Modeling, 2024, v. 16, no. 2, pp. 525-554

    We propose a four-component model of a plankton community with discrete time. The model considers the competitive relationships of phytoplankton groups exhibited between each other and the trophic characteristics zooplankton displays: it considers the division of zooplankton into predatory and non-predatory components. The model explicitly represents the consumption of non-predatory zooplankton by predatory. Non-predatory zooplankton feeds on phytoplankton, which includes two competing components: toxic and non-toxic types, with the latter being suitable for zooplankton food. A model of two coupled Ricker equations, focused on describing the dynamics of a competitive community, describes the interaction of two phytoplanktons and allows implicitly taking into account the limitation of each of the competing components of biomass growth by the availability of external resources. The model describes the prey consumption by their predators using a Holling type II trophic function, considering predator saturation.

    The analysis of scenarios for the transition from stationary dynamics to fluctuations in the population size of community members showed that the community loses the stability of the non-trivial equilibrium corresponding to the coexistence of the complete community both through a cascade of period-doubling bifurcations and through a Neimark – Sacker bifurcation leading to the emergence of quasi-periodic oscillations. Although quite simple, the model proposed in this work demonstrates dynamics of comunity similar to that natural systems and experiments observe: with a lag of predator oscillations relative to the prey by about a quarter of the period, long-period antiphase cycles of predator and prey, as well as hidden cycles in which the prey density remains almost constant, and the predator density fluctuates, demonstrating the influence fast evolution exhibits that masks the trophic interaction. At the same time, the variation of intra-population parameters of phytoplankton or zooplankton can lead to pronounced changes the community experiences in the dynamic mode: sharp transitions from regular to quasi-periodic dynamics and further to exact cycles with a small period or even stationary dynamics. Quasi-periodic dynamics can arise at sufficiently small phytoplankton growth rates corresponding to stable or regular community dynamics. The change of the dynamic mode in this area (the transition from stable dynamics to quasi-periodic and vice versa) can occur due to the variation of initial conditions or external influence that changes the current abundances of components and shifts the system to the basin of attraction of another dynamic mode.

  8. Melnikova I.V., Bovkun V.A.
    Connection between discrete financial models and continuous models with Wiener and Poisson processes
    Computer Research and Modeling, 2023, v. 15, no. 3, pp. 781-795

    The paper is devoted to the study of relationships between discrete and continuous models financial processes and their probabilistic characteristics. First, a connection is established between the price processes of stocks, hedging portfolio and options in the models conditioned by binomial perturbations and their limit perturbations of the Brownian motion type. Secondly, analogues in the coefficients of stochastic equations with various random processes, continuous and jumpwise, and in the coefficients corresponding deterministic equations for their probabilistic characteristics. Statement of the results on the connections and finding analogies, obtained in this paper, led to the need for an adequate presentation of preliminary information and results from financial mathematics, as well as descriptions of related objects of stochastic analysis. In this paper, partially new and known results are presented in an accessible form for those who are not specialists in financial mathematics and stochastic analysis, and for whom these results are important from the point of view of applications. Specifically, the following sections are presented.

    • In one- and n-period binomial models, it is proposed a unified approach to determining on the probability space a risk-neutral measure with which the discounted option price becomes a martingale. The resulting martingale formula for the option price is suitable for numerical simulation. In the following sections, the risk-neutral measures approach is applied to study financial processes in continuous-time models.

    • In continuous time, models of the price of shares, hedging portfolios and options are considered in the form of stochastic equations with the Ito integral over Brownian motion and over a compensated Poisson process. The study of the properties of these processes in this section is based on one of the central objects of stochastic analysis — the Ito formula. Special attention is given to the methods of its application.

    • The famous Black – Scholes formula is presented, which gives a solution to the partial differential equation for the function $v(t, x)$, which, when $x = S (t)$ is substituted, where $S(t)$ is the stock price at the moment time $t$, gives the price of the option in the model with continuous perturbation by Brownian motion.

    • The analogue of the Black – Scholes formula for the case of the model with a jump-like perturbation by the Poisson process is suggested. The derivation of this formula is based on the technique of risk-neutral measures and the independence lemma.

  9. Dubinina M.G.
    Spatio-temporal models of ICT diffusion
    Computer Research and Modeling, 2023, v. 15, no. 6, pp. 1695-1712

    The article proposes a space-time approach to modeling the diffusion of information and communication technologies based on the Fisher –Kolmogorov– Petrovsky – Piskunov equation, in which the diffusion kinetics is described by the Bass model, which is widely used to model the diffusion of innovations in the market. For this equation, its equilibrium positions are studied, and based on the singular perturbation theory, was obtained an approximate solution in the form of a traveling wave, i. e. a solution that propagates at a constant speed while maintaining its shape in space. The wave speed shows how much the “spatial” characteristic, which determines the given level of technology dissemination, changes in a single time interval. This speed is significantly higher than the speed at which propagation occurs due to diffusion. By constructing such an autowave solution, it becomes possible to estimate the time required for the subject of research to achieve the current indicator of the leader.

    The obtained approximate solution was further applied to assess the factors affecting the rate of dissemination of information and communication technologies in the federal districts of the Russian Federation. Various socio-economic indicators were considered as “spatial” variables for the diffusion of mobile communications among the population. Growth poles in which innovation occurs are usually characterized by the highest values of “spatial” variables. For Russia, Moscow is such a growth pole; therefore, indicators of federal districts related to Moscow’s indicators were considered as factor indicators. The best approximation to the initial data was obtained for the ratio of the share of R&D costs in GRP to the indicator of Moscow, average for the period 2000–2009. It was found that for the Ural Federal District at the initial stage of the spread of mobile communications, the lag behind the capital was less than one year, for the Central Federal District, the Northwestern Federal District — 1.4 years, for the Volga Federal District, the Siberian Federal District, the Southern Federal District and the Far Eastern Federal District — less than two years, in the North Caucasian Federal District — a little more 2 years. In addition, estimates of the delay time for the spread of digital technologies (intranet, extranet, etc.) used by organizations of the federal districts of the Russian Federation from Moscow indicators were obtained.

  10. Gorbachev O.G.
    Probabilistic-statistical model of insurance capital
    Computer Research and Modeling, 2012, v. 4, no. 1, pp. 231-235

    The article reveals the necessity of introduction of new economic category such as “insurance capital”. Insurance activity generates a specific kind of capital (as a production factor) – the guarantee fund, which is called “primary insurance monetary capital". The article establishes that, due to its probabilistic and statistical nature, the insurance capital has a number of specific features in addition to conventional characteristics of capital as a production factor. Basing on probabilistic-statistical model author investigates the role of insurance capital in the formation of price for insurance services. In particular, the author exposes that the law of diminishing returns is not universal when talking about insurance capital.

    Views (last year): 1. Citations: 2 (RSCI).
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