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Quadratic Padé Approximation: Numerical Aspects and Applications
Computer Research and Modeling, 2019, v. 11, no. 6, pp. 1017-1031Padé approximation is a useful tool for extracting singularity information from a power series. A linear Padé approximant is a rational function and can provide estimates of pole and zero locations in the complex plane. A quadratic Padé approximant has square root singularities and can, therefore, provide additional information such as estimates of branch point locations. In this paper, we discuss numerical aspects of computing quadratic Padé approximants as well as some applications. Two algorithms for computing the coefficients in the approximant are discussed: a direct method involving the solution of a linear system (well-known in the mathematics community) and a recursive method (well-known in the physics community). We compare the accuracy of these two methods when implemented in floating-point arithmetic and discuss their pros and cons. In addition, we extend Luke’s perturbation analysis of linear Padé approximation to the quadratic case and identify the problem of spurious branch points in the quadratic approximant, which can cause a significant loss of accuracy. A possible remedy for this problem is suggested by noting that these troublesome points can be identified by the recursive method mentioned above. Another complication with the quadratic approximant arises in choosing the appropriate branch. One possibility, which is to base this choice on the linear approximant, is discussed in connection with an example due to Stahl. It is also known that the quadratic method is capable of providing reasonable approximations on secondary sheets of the Riemann surface, a fact we illustrate here by means of an example. Two concluding applications show the superiority of the quadratic approximant over its linear counterpart: one involving a special function (the Lambert $W$-function) and the other a nonlinear PDE (the continuation of a solution of the inviscid Burgers equation into the complex plane).
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Computer model of a perfect-mixing extraction reactor in the format of the component circuits method with non-uniform vector connections
Computer Research and Modeling, 2024, v. 16, no. 3, pp. 599-614The features of the component circuits method (MCC) in modeling chemical-technological systems (CTS) are considered, taking into account its practical significance. The software and algorithmic implementation of which is currently a set of computer modeling programs MARS (Modeling and Automatic Research of Systems). MARS allows the development and analysis of mathematical models with specified experimental parameters. Research and calculations were carried out using a specialized software and hardware complex MARS, which allows the development of mathematical models with specified experimental parameters. In the course of this work, the model of a perfect-mixing reactor was developed in the MARS modeling environment taking into account the physicochemical features of the uranium extraction process in the presence of nitric acid and tributyl phosphate. As results, the curves of changes of the concentration of uranium extracted into the organic phase are presented. The possibility of using MCC for the description and analysis of CTS, including extraction processes, has been confirmed. The use of the obtained results is planned to be used in the development of a virtual laboratory, which will include the main apparatus of the chemical industry, as well as complex technical controlled systems (CTСS) based on them and will allow one to acquire a wide range of professional competencies in working with “digital twins” of real control objects, including gaining initial experience working with the main equipment of the nuclear industry. In addition to the direct applied benefits, it is also assumed that the successful implementation of the domestic complex of computer modeling programs and technologies based on the obtained results will make it possible to find solutions to the problems of organizing national technological sovereignty and import substitution.
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Automated citation graph building from a corpora of scientific documents
Computer Research and Modeling, 2012, v. 4, no. 4, pp. 707-719Views (last year): 5. Citations: 1 (RSCI).In this paper the problem of automated building of a citation graph from a collection of scientific documents is considered as a sequence of machine learning tasks. The overall data processing technology is described which consists of six stages: preprocessing, metainformation extraction, bibliography lists extraction, splitting bibliography lists into separate bibliography records, standardization of each bibliography record, and record linkage. The goal of this paper is to provide a survey of approaches and algorithms suitable for each stage, motivate the choice of the best combination of algorithms, and adapt some of them for multilingual bibliographies processing. For some of the tasks new algorithms and heuristics are proposed and evaluated on the mixed English and Russian documents corpora.
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Numerical investigation of the gas-condensate mixture flow in a porous medium
Computer Research and Modeling, 2018, v. 10, no. 2, pp. 209-219Views (last year): 18. Citations: 2 (RSCI).In the last decades, the development of methods for increasing the efficiency of hydrocarbon extraction in fields with unconventional reserves containing large amounts of gas condensate is of great importance. This makes important the development of methods of mathematical modeling that realistically describe physical processes in a gas-condensate mixture in a porous medium.
In the paper, a mathematical model which describes the dynamics of the pressure, velocity and concentration of the components of a two-component two-phase mixture entering a laboratory model of plast filled with a porous substance with known physicochemical properties is considered. The mathematical model is based on a system of nonlinear spatially one-dimensional partial differential equations with the corresponding initial and boundary conditions. Laboratory experiments show that during a finite time the system stabilizes, what gives a basis to proceed to the stationary formulation of the problem.
The numerical solution of the formulated system of ordinary differential equations is realized in the Maple environment on the basis of the Runge–Kutta procedure. It is shown that the physical parameters of the gascondensate mixture, which characterize the modeled system in the stabilization regime, obtained on this basis, are in good agreement with the available experimental data. This confirms the correctness of the chosen approach and the validity of its further application and development for computer modeling of physical processes in gas-condensate mixtures in a porous medium. The paper presents a mathematical formulation of the system of partial differential equations and of respective system stationary equations, describes the numerical approach, and discusses the numerical results obtained in comparison with experimental data.
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Traffic flow speed prediction on transportation graph with convolutional neural networks
Computer Research and Modeling, 2018, v. 10, no. 3, pp. 359-367Views (last year): 36.The short-term prediction of road traffic condition is one of the main tasks of transportation modelling. The main purpose of which are traffic control, reporting of accidents, avoiding traffic jams due to knowledge of traffic flow and subsequent transportation planning. A number of solutions exist — both model-driven and data driven had proven to be successful in capturing the dynamics of traffic flow. Nevertheless, most space-time models suffer from high mathematical complexity and low efficiency. Artificial Neural Networks, one of the prominent datadriven approaches, show promising performance in modelling the complexity of traffic flow. We present a neural network architecture for traffic flow prediction on a real-world road network graph. The model is based on the combination of a recurrent neural network and graph convolutional neural network. Where a recurrent neural network is used to model temporal dependencies, and a convolutional neural network is responsible for extracting spatial features from traffic. To make multiple few steps ahead predictions, the encoder-decoder architecture is used, which allows to reduce noise propagation due to inexact predictions. To model the complexity of traffic flow, we employ multilayered architecture. Deeper neural networks are more difficult to train. To speed up the training process, we use skip-connections between each layer, so that each layer teaches only the residual function with respect to the previous layer outputs. The resulting neural network was trained on raw data from traffic flow detectors from the US highway system with a resolution of 5 minutes. 3 metrics: mean absolute error, mean relative error, mean-square error were used to estimate the quality of the prediction. It was found that for all metrics the proposed model achieved lower prediction error than previously published models, such as Vector Auto Regression, LSTM and Graph Convolution GRU.
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The use of cluster analysis methods for the study of a set of feasible solutions of the phase problem in biological crystallography
Computer Research and Modeling, 2010, v. 2, no. 1, pp. 91-101Views (last year): 2.X-ray diffraction experiment allows determining of magnitudes of complex coefficients in the decomposition of the studied electron density distribution into Fourier series. The determination of the lost in the experiment phase values poses the central problem of the method, namely the phase problem. Some methods for solving of the phase problem result in a set of feasible solutions. Cluster analysis method may be used to investigate the composition of this set and to extract one or several typical solutions. An essential feature of the approach is the estimation of the closeness of two solutions by the map correlation between two aligned Fourier syntheses calculated with the use of phase sets under comparison. An interactive computer program ClanGR was designed to perform this analysis.
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Analysis of mixed reality cross-device global localization algorithms based on point cloud registration
Computer Research and Modeling, 2023, v. 15, no. 3, pp. 657-674State-of-the-art localization and mapping approaches for augmented (AR) and mixed (MR) reality devices are based on the extraction of local features from the camera. Along with this, modern AR/MR devices allow you to build a three-dimensional mesh of the surrounding space. However, the existing methods do not solve the problem of global device co-localization due to the use of different methods for extracting computer vision features. Using a space map from a 3D mesh, we can solve the problem of collaborative global localization of AR/MR devices. This approach is independent of the type of feature descriptors and localisation and mapping algorithms used onboard the AR/MR device. The mesh can be reduced to a point cloud, which consists of only the vertices of the mesh. We propose an approach for collaborative localization of AR/MR devices using point clouds that are independent of algorithms onboard the device. We have analyzed various point cloud registration algorithms and discussed their limitations for the problem of global co-localization of AR/MR devices indoors.
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Deep learning analysis of intracranial EEG for recognizing drug effects and mechanisms of action
Computer Research and Modeling, 2024, v. 16, no. 3, pp. 755-772Predicting novel drug properties is fundamental to polypharmacology, repositioning, and the study of biologically active substances during the preclinical phase. The use of machine learning, including deep learning methods, for the identification of drug – target interactions has gained increasing popularity in recent years.
The objective of this study was to develop a method for recognizing psychotropic effects and drug mechanisms of action (drug – target interactions) based on an analysis of the bioelectrical activity of the brain using artificial intelligence technologies.
Intracranial electroencephalographic (EEG) signals from rats were recorded (4 channels at a sampling frequency of 500 Hz) after the administration of psychotropic drugs (gabapentin, diazepam, carbamazepine, pregabalin, eslicarbazepine, phenazepam, arecoline, pentylenetetrazole, picrotoxin, pilocarpine, chloral hydrate). The signals were divided into 2-second epochs, then converted into $2000\times 4$ images and input into an autoencoder. The output of the bottleneck layer was subjected to classification and clustering using t-SNE, and then the distances between resulting clusters were calculated. As an alternative, an approach based on feature extraction with dimensionality reduction using principal component analysis and kernel support vector machine (kSVM) classification was used. Models were validated using 5-fold cross-validation.
The classification accuracy obtained for 11 drugs during cross-validation was $0.580 \pm 0.021$, which is significantly higher than the accuracy of the random classifier $(0.091 \pm 0.045, p < 0.0001)$ and the kSVM $(0.441 \pm 0.035, p < 0.05)$. t-SNE maps were generated from the bottleneck parameters of intracranial EEG signals. The relative proximity of the signal clusters in the parametric space was assessed.
The present study introduces an original method for biopotential-mediated prediction of effects and mechanism of action (drug – target interaction). This method employs convolutional neural networks in conjunction with a modified selective parameter reduction algorithm. Post-treatment EEGs were compressed into a unified parameter space. Using a neural network classifier and clustering, we were able to recognize the patterns of neuronal response to the administration of various psychotropic drugs.
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Simulation of the gas condensate reservoir depletion
Computer Research and Modeling, 2020, v. 12, no. 5, pp. 1081-1095One of problems in developing the gas condensate fields lies on the fact that the condensed hydrocarbons in the gas-bearing layer can get stuck in the pores of the formation and hence cannot be extracted. In this regard, research is underway to increase the recoverability of hydrocarbons in such fields. This research includes a wide range of studies on mathematical simulations of the passage of gas condensate mixtures through a porous medium under various conditions.
In the present work, within the classical approach based on the Darcy law and the law of continuity of flows, we formulate an initial-boundary value problem for a system of nonlinear differential equations that describes a depletion of a multicomponent gas-condensate mixture in porous reservoir. A computational scheme is developed on the basis of the finite-difference approximation and the fourth order Runge .Kutta method. The scheme can be used for simulations both in the spatially one-dimensional case, corresponding to the conditions of the laboratory experiment, and in the two-dimensional case, when it comes to modeling a flat gas-bearing formation with circular symmetry.
The computer implementation is based on the combination of C++ and Maple tools, using the MPI parallel programming technique to speed up the calculations. The calculations were performed on the HybriLIT cluster of the Multifunctional Information and Computing Complex of the Laboratory of Information Technologies of the Joint Institute for Nuclear Research.
Numerical results are compared with the experimental data on the pressure dependence of output of a ninecomponent hydrocarbon mixture obtained at a laboratory facility (VNIIGAZ, Ukhta). The calculations were performed for two types of porous filler in the laboratory model of the formation: terrigenous filler at 25 .„R and carbonate one at 60 .„R. It is shown that the approach developed ensures an agreement of the numerical results with experimental data. By fitting of numerical results to experimental data on the depletion of the laboratory reservoir, we obtained the values of the parameters that determine the inter-phase transition coefficient for the simulated system. Using the same parameters, a computer simulation of the depletion of a thin gas-bearing layer in the circular symmetry approximation was carried out.
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The development of an intelligent system for recognizing the volume and weight characteristics of cargo
Computer Research and Modeling, 2021, v. 13, no. 2, pp. 437-450Industrial imaging or “machine vision” is currently a key technology in many industries as it can be used to optimize various processes. The purpose of this work is to create a software and hardware complex for measuring the overall and weight characteristics of cargo based on an intelligent system using neural network identification methods that allow one to overcome the technological limitations of similar complexes implemented on ultrasonic and infrared measuring sensors. The complex to be developed will measure cargo without restrictions on the volume and weight characteristics of cargo to be tariffed and sorted within the framework of the warehouse complexes. The system will include an intelligent computer program that determines the volume and weight characteristics of cargo using the machine vision technology and an experimental sample of the stand for measuring the volume and weight of cargo.
We analyzed the solutions to similar problems. We noted that the disadvantages of the studied methods are very high requirements for the location of the camera, as well as the need for manual operations when calculating the dimensions, which cannot be automated without significant modifications. In the course of the work, we investigated various methods of object recognition in images to carry out subject filtering by the presence of cargo and measure its overall dimensions. We obtained satisfactory results when using cameras that combine both an optical method of image capture and infrared sensors. As a result of the work, we developed a computer program allowing one to capture a continuous stream from Intel RealSense video cameras with subsequent extraction of a three-dimensional object from the designated area and to calculate the overall dimensions of the object. At this stage, we analyzed computer vision techniques; developed an algorithm to implement the task of automatic measurement of goods using special cameras and the software allowing one to obtain the overall dimensions of objects in automatic mode.
Upon completion of the work, this development can be used as a ready-made solution for transport companies, logistics centers, warehouses of large industrial and commercial enterprises.
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International Interdisciplinary Conference "Mathematics. Computing. Education"