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Three-dimensional modelling of turbulent transfer in the atmospheric surface layer using the theory of contrast structures
Computer Research and Modeling, 2016, v. 8, no. 2, pp. 355-367Views (last year): 3. Citations: 1 (RSCI).A three-dimensional (3D) hydrodynamic model to describe the spatial patterns of wind and turbulence characteristics in the atmospheric surface layer over inhomogeneous vegetation cover is presented. To describe the interaction of air flow with vegetation the theory of contrast structures is used. The numerical experiments provided by a developed model to assess the impact of small clear-cutting on wind and turbulent regime in the atmospheric surface layer showed a significant influence of heterogeneous vegetation on the wind field and the turbulent exchange processes between the land surface and the atmosphere. Obtained results give a reasonable agreement with field experimental data and results of numerical experiments provided using alternative models.
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Combining the agent approach and the general equilibrium approach to analyze the influence of the shadow sector on the Russian economy
Computer Research and Modeling, 2020, v. 12, no. 3, pp. 669-684This article discusses the influence of the shadow, informal and household sectors on the dynamics of a stochastic model with heterogeneous (heterogeneous) agents. The study uses the integration of the general equilibrium approach to explain the behavior of demand, supply and prices in an economy with several interacting markets, and a multi-agent approach. The analyzed model describes an economy with aggregated uncertainty and with an infinite number of heterogeneous agents (households). The source of heterogeneity is the idiosyncratic income shocks of agents in the legal and shadow sectors of the economy. In the analysis, an algorithm is used to approximate the dynamics of the distribution function of the capital stocks of individual agents — the dynamics of its first and second moments. The synthesis of the agent approach and the general equilibrium approach is carried out using computer implementation of the recursive feedback between microagents and macroenvironment. The behavior of the impulse response functions of the main variables of the model confirms the positive influence of the shadow economy (below a certain limit) on minimizing the rate of decline in economic indicators during recessions, especially for developing economies. The scientific novelty of the study is the combination of a multi-agent approach and a general equilibrium approach for modeling macroeconomic processes at the regional and national levels. Further research prospects may be associated with the use of more detailed general equilibrium models, which allow, in particular, to describe the behavior of heterogeneous groups of agents in the entrepreneurial sector of the economy.
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Development of a computational environment for mathematical modeling of superconducting nanostructures with a magnet
Computer Research and Modeling, 2023, v. 15, no. 5, pp. 1349-1358Now days the main research activity in the field of nanotechnology is aimed at the creation, study and application of new materials and new structures. Recently, much attention has been attracted by the possibility of controlling magnetic properties using a superconducting current, as well as the influence of magnetic dynamics on the current–voltage characteristics of hybrid superconductor/ferromagnet (S/F) nanostructures. In particular, such structures include the S/F/S Josephson junction or molecular nanomagnets coupled to the Josephson junctions. Theoretical studies of the dynamics of such structures need processes of a large number of coupled nonlinear equations. Numerical modeling of hybrid superconductor/magnet nanostructures implies the calculation of both magnetic dynamics and the dynamics of the superconducting phase, which strongly increases their complexity and scale, so it is advisable to use heterogeneous computing systems.
In the course of studying the physical properties of these objects, it becomes necessary to numerically solve complex systems of nonlinear differential equations, which requires significant time and computational resources.
The currently existing micromagnetic algorithms and frameworks are based on the finite difference or finite element method and are extremely useful for modeling the dynamics of magnetization on a wide time scale. However, the functionality of existing packages does not allow to fully implement the desired computation scheme.
The aim of the research is to develop a unified environment for modeling hybrid superconductor/magnet nanostructures, providing access to solvers and developed algorithms, and based on a heterogeneous computing paradigm that allows research of superconducting elements in nanoscale structures with magnets and hybrid quantum materials. In this paper, we investigate resonant phenomena in the nanomagnet system associated with the Josephson junction. Such a system has rich resonant physics. To study the possibility of magnetic reversal depending on the model parameters, it is necessary to solve numerically the Cauchy problem for a system of nonlinear equations. For numerical simulation of hybrid superconductor/magnet nanostructures, a computing environment based on the heterogeneous HybriLIT computing platform is implemented. During the calculations, all the calculation times obtained were averaged over three launches. The results obtained here are of great practical importance and provide the necessary information for evaluating the physical parameters in superconductor/magnet hybrid nanostructures.
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Pattern formation of a three-species predator – prey model with prey-taxis and omnivorous predator
Computer Research and Modeling, 2023, v. 15, no. 6, pp. 1617-1634The spatiotemporal dynamics of a three-component model for food web is considered. The model describes the interactions among resource, prey and predator that consumes both species. In a previous work, the author analyzed the model without taking into account spatial heterogeneity. This study continues the model study of the community considering the diffusion of individuals, as well as directed movements of the predator. It is assumed that the predator responds to the spatial change in the resource and prey density by occupying areas where species density is higher or avoiding them. Directed predator movement is described by the advection term, where velocity is proportional to the gradient of resource and prey density. The system is considered on a one-dimensional domain with zero-flux conditions as boundary ones. The spatiotemporal dynamics produced by model is determined by the system stability in the vicinity of stationary homogeneous state with respect to small inhomogeneous perturbations. The paper analyzes the possibility of wave instability leading to the emergence of autowaves and Turing instability, as a result of which stationary patterns are formed. Sufficient conditions for the existence of both types of instability are obtained. The influence of local kinetic parameters on the spatial structure formation was analyzed. It was shown that only Turing instability is possible when taxis on the resource is positive, but with a negative taxis, both types of instability are possible. The numerical solution of the system was found by using method of lines (MOL) with the numerical integration of ODE system by means of splitting techniques. The spatiotemporal dynamics of the system is presented in several variants, realizing one of the instability types. In the case of a positive taxis on the prey, both autowave and stationary structures are formed in smaller regions, with an increase in the region size, Turing structures are not formed. For negative taxis on the prey, stationary patterns is observed in both regions, while periodic structures appear only in larger areas.
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Activity dynamics in virtual networks: an epidemic model vs an excitable medium model
Computer Research and Modeling, 2020, v. 12, no. 6, pp. 1485-1499Epidemic models are widely used to mimic social activity, such as spreading of rumors or panic. Simultaneously, models of excitable media are traditionally used to simulate the propagation of activity. Spreading of activity in the virtual community was simulated within two models: the SIRS epidemic model and the Wiener – Rosenblut model of the excitable media. We used network versions of these models. The network was assumed to be heterogeneous, namely, each element of the network has an individual set of characteristics, which corresponds to different psychological types of community members. The structure of a virtual network relies on an appropriate scale-free network. Modeling was carried out on scale-free networks with various values of the average degree of vertices. Additionally, a special case was considered, namely, a complete graph corresponding to a close professional group, when each member of the group interacts with each. Participants in a virtual community can be in one of three states: 1) potential readiness to accept certain information; 2) active interest to this information; 3) complete indifference to this information. These states correspond to the conditions that are usually used in epidemic models: 1) susceptible to infection, 2) infected, 3) refractory (immune or death due to disease). A comparison of the two models showed their similarity both at the level of main assumptions and at the level of possible modes. Distribution of activity over the network is similar to the spread of infectious diseases. It is shown that activity in virtual networks may experience fluctuations or decay.
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OpenCL realization of some many-body potentials
Computer Research and Modeling, 2015, v. 7, no. 3, pp. 549-558Views (last year): 4. Citations: 1 (RSCI).Modeling of carbon nanostructures by means of classical molecular dynamics requires a lot of computations. One of the ways to improve the performance of basic algorithms is to transform them for running on SIMD-type computing systems such as systems with dedicated GPU. In this work we describe the development of algorithms for computation of many-body interaction based on Tersoff and embedded-atom potentials by means of OpenCL technology. OpenCL standard provides universality and portability of the algorithms and can be successfully used for development of the software for heterogeneous computing systems. The performance of algorithms is evaluated on CPU and GPU hardware platforms. It is shown that concurrent memory writes is effective for Tersoff bond order potential. The same approach for embedded-atom potential is shown to be slower than algorithm without concurrent memory access. Performance evaluation shows a significant GPU acceleration of energy-force evaluation algorithms for many-body potentials in comparison to the corresponding serial implementations.
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