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Investigation of individual-based mechanisms of single-species population dynamics by logical deterministic cellular automata
Computer Research and Modeling, 2015, v. 7, no. 6, pp. 1279-1293Views (last year): 16. Citations: 3 (RSCI).Investigation of logical deterministic cellular automata models of population dynamics allows to reveal detailed individual-based mechanisms. The search for such mechanisms is important in connection with ecological problems caused by overexploitation of natural resources, environmental pollution and climate change. Classical models of population dynamics have the phenomenological nature, as they are “black boxes”. Phenomenological models fundamentally complicate research of detailed mechanisms of ecosystem functioning. We have investigated the role of fecundity and duration of resources regeneration in mechanisms of population growth using four models of ecosystem with one species. These models are logical deterministic cellular automata and are based on physical axiomatics of excitable medium with regeneration. We have modeled catastrophic death of population arising from increasing of resources regeneration duration. It has been shown that greater fecundity accelerates population extinction. The investigated mechanisms are important for understanding mechanisms of sustainability of ecosystems and biodiversity conservation. Prospects of the presented modeling approach as a method of transparent multilevel modeling of complex systems are discussed.
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Mathematical modeling the kinetics and calculation of dosimetric characteristics of osteotropic radiopharmaceutical drugs
Computer Research and Modeling, 2022, v. 14, no. 3, pp. 647-660In Russian medicine two radiopharmaceuticals are currently used for radionuclide therapy of bone metastases: 89Sr-chloride and 153Sm-oxabifor. The first one has many side effects, so its use is limited. The second one is available only in clinics, its transportation to which does not take much time. Currently, the third radiopharmaceutical 188Re-solerene is undergoing clinical trials. Due to the generator method of obtaining 188Re, this radiopharmaceutical should become available for use in many regions of our country. Therefore, there is a need for a comparative analysis of the characteristics of these radiopharmaceuticals, including on the basis of mathematical modeling.
The article discusses the features of mathematical modeling the kinetics of osteotropic radiopharmaceutical drugs in the human body with bone metastases. Based on the four-compartment model, a complex of modeling and calculation of pharmacokinetic and dosimetric characteristics of radiopharmaceuticals for radionuclide therapy of bone metastases was developed and tested. Using clinical data, the transport constants of the model were identified and the individual characteristics of Russian radiopharmaceuticals labeled 89Sr, 153Sm and 188Re were calculated (effective half-lives, maximum activity in the compartments and the times of their achievement, absorbed doses to bone tissue and metastases, endosteal bone layer, red bone marrow, blood, kidneys and bladder). The time activity dependencies for all compartments of the model are obtained and analyzed. A comparative analysis of the pharmacokinetics and dosimetry of three radiopharmaceuticals (89Sr-chloride, 153Sm-oxabiphore, 188Re-solerene) was carried out.
From a comparative analysis of the pharmacokinetic and dosimetric characteristics of these radiopharmaceutical drugs, it follows that the best of them for widespread use in many regions of our country should be 188Re-solerene, taking into account the generator method of obtaining 188Re in a hospital.
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Physical research and numerical modeling of the lower ionosphere perturbed by powerful radio emission. Part 1. Brief review and problem statement
Computer Research and Modeling, 2023, v. 15, no. 3, pp. 619-637The main aim, formulated in the first part of article, is to carry out detailed numerical studies of the chemical, ionization, optical, and temperature characteristics of the lower ionosphere perturbed by powerful radio emission. The brief review of the main experimental and theoretical researches of physical phenomena occurring in the ionosphere when it is heated by high-power high-frequency radio waves from heating facilities is given. The decisive role of the $D$-region of the ionosphere in the absorption of radio beam energy is shown. A detailed analysis of kinetic processes in the disturbed $D$-region, which is the most complex in kinetic terms, has been performed. It is shown that for a complete description of the ionization-chemical and optical characteristics of the disturbed region, it is necessary to take into account more than 70 components, which, according to their main physical content, can be conveniently divided into five groups. A kinetic model is presented to describe changes in the concentrations of components interacting (the total number of reactions is 259). The system of kinetic equations was solved using a semi-implicit numerical method specially adapted to such problems. Based on the proposed structure, a software package was developed in which the algorithm scheme allowed changing both the content of individual program blocks and their number, which made it possible to conduct detailed numerical studies of individual processes in the behavior of the parameters of the perturbed region. The complete numerical algorithm is based on the two-temperature approximation, in which the main attention was paid to the calculation of the electron temperature, since its behavior is determined by inelastic kinetic processes involving electrons. The formulation of the problem is of a rather general nature and makes it possible to calculate the parameters of the disturbed ionosphere in a wide range of powers and frequencies of radio emission. Based on the developed numerical technique, it is possible to study a wide range of phenomena both in the natural and disturbed ionosphere.
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On a possible approach to a sport game with continuous time simulation
Computer Research and Modeling, 2014, v. 6, no. 3, pp. 455-460Views (last year): 3. Citations: 2 (RSCI).This paper is dedicated to discussing methods of statistical modeling the outcomes of sport events and, particularly, matches with continuous time. We propose a simulation-based approach to predicting the outcome of a match, somehow medium between pure statistical methods and agent simulation of individual players. An example of retrospective prediction is given.
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Biohydrochemical portrait of the White Sea
Computer Research and Modeling, 2018, v. 10, no. 1, pp. 125-160The biohydrochemical portrait of the White Sea is constructed on the CNPSi-model calculations based on long-term mean annual observations (average monthly hydrometeorological, hydrochemical and hydrobiological parameters of the marine environment) as well as on updated information on the nutrient input to the sea with the runoff of the main river tributaries (Niva, Onega, Northern Dvina, Mezen, Kem, Keret). Parameters of the marine environment are temperature, light, transparency, and biogenic load. Ecological characteristics of the sea “portrait” were calculated for nine marine areas (Kandalaksha, Onega, Dvinsky, Mezensky Bays, Solovetsky Islands, Basin, Gorlot, Voronka, Chupa Bay), these are: the concentration changes of organic and mineral compounds of biogenic elements (C, N, P, Si), the biomass of organisms of the lower trophic level (heterotrophic bacteria, diatomic phytoplankton, herbivorous and predatory zooplankton) and other ones (rates of substance concentration and organism biomass changes, internal and external substance flows, balances of individual substances and nutrients as a whole). Parameters of the marine environment state (water temperature, ratio of mineral fractions N < P) and dominant diatom phytoplankton in the sea (abundance, production, biomass, chlorophyll content a) were calculated and compared with the results of individual surveys (for 1972–1991 and 2007–2012) of the White Sea water areas. The methods for estimating the values of these parameters from observations and calculations differ, however, the calculated values of the phytoplankton state are comparable with the measurements and are similar to the data given in the literature. Therefore, according to the literature data, the annual production of diatoms in the White Sea is estimated at 1.5–3 million tons C (at a vegetation period of 180 days), and according to calculations it is ~2 and 3.5 million tons C for vegetation period of 150 and 180 days respectively.
Keywords: White Sea ecosystem, nutrients, heterotrophic bacterioplankton, diatom phytoplankton, herbivorous and predatory zooplankton, detritus, trophic chain, CNPSi-model of nutrient biotransformation, ecological portrait of the White Sea, the comparison of the observed and calculated parameters of diatoms (abundance, products, biomass, chlorophyll a).Views (last year): 15. Citations: 1 (RSCI). -
Molecular-dynamic simulation of water vapor interaction with suffering pores of the cylindrical type
Computer Research and Modeling, 2019, v. 11, no. 3, pp. 493-501Views (last year): 9.Theoretical and experimental investigations of water vapor interaction with porous materials are carried out both at the macro level and at the micro level. At the macro level, the influence of the arrangement structure of individual pores on the processes of water vapor interaction with porous material as a continuous medium is studied. At the micro level, it is very interesting to investigate the dependence of the characteristics of the water vapor interaction with porous media on the geometry and dimensions of the individual pore.
In this paper, a study was carried out by means of mathematical modelling of the processes of water vapor interaction with suffering pore of the cylindrical type. The calculations were performed using a model of a hybrid type combining a molecular-dynamic and a macro-diffusion approach for describing water vapor interaction with an individual pore. The processes of evolution to the state of thermodynamic equilibrium of macroscopic characteristics of the system such as temperature, density, and pressure, depending on external conditions with respect to pore, were explored. The dependence of the evolution parameters on the distribution of the diffusion coefficient in the pore, obtained as a result of molecular dynamics modelling, is examined. The relevance of these studies is due to the fact that all methods and programs used for the modelling of the moisture and heat conductivity are based on the use of transport equations in a porous material as a continuous medium with known values of the transport coefficients, which are usually obtained experimentally.
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Technology for collecting initial data for constructing models for assessing the functional state of a human by pupil's response to illumination changes in the solution of some problems of transport safety
Computer Research and Modeling, 2021, v. 13, no. 2, pp. 417-427This article solves the problem of developing a technology for collecting initial data for building models for assessing the functional state of a person. This condition is assessed by the pupil response of a person to a change in illumination based on the pupillometry method. This method involves the collection and analysis of initial data (pupillograms), presented in the form of time series characterizing the dynamics of changes in the human pupils to a light impulse effect. The drawbacks of the traditional approach to the collection of initial data using the methods of computer vision and smoothing of time series are analyzed. Attention is focused on the importance of the quality of the initial data for the construction of adequate mathematical models. The need for manual marking of the iris and pupil circles is updated to improve the accuracy and quality of the initial data. The stages of the proposed technology for collecting initial data are described. An example of the obtained pupillogram is given, which has a smooth shape and does not contain outliers, noise, anomalies and missing values. Based on the presented technology, a software and hardware complex has been developed, which is a collection of special software with two main modules, and hardware implemented on the basis of a Raspberry Pi 4 Model B microcomputer, with peripheral equipment that implements the specified functionality. To evaluate the effectiveness of the developed technology, models of a single-layer perspetron and a collective of neural networks are used, for the construction of which the initial data on the functional state of intoxication of a person were used. The studies have shown that the use of manual marking of the initial data (in comparison with automatic methods of computer vision) leads to a decrease in the number of errors of the 1st and 2nd years of the kind and, accordingly, to an increase in the accuracy of assessing the functional state of a person. Thus, the presented technology for collecting initial data can be effectively used to build adequate models for assessing the functional state of a person by pupillary response to changes in illumination. The use of such models is relevant in solving individual problems of ensuring transport security, in particular, monitoring the functional state of drivers.
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Harvesting impact on population dynamics with age and sex structure: optimal harvesting and the hydra effect
Computer Research and Modeling, 2022, v. 14, no. 5, pp. 1107-1130Based on the time-discrete model, we study the effect of selective proportional harvesting on the population dynamics with age and sex structure. When constructing the model, we assume that the population birth rate depends on the ratio of the sexes and the number of formed pairs. The regulation of population growth is carried out by limiting the juvenile’s survival when the survival of immature individuals decreases with an increase in the numbers of sex and age classes. We consider cases where the harvest is carried out only from a younger age class or from a group of mature females or males. We find that the harvesting of males or females at the optimal level is responsible for changing the ratio of females to males (taking into account the average size of the harem). We show that the maximum number of harvested males is achieved either at such a harvest rate when their excess number is withdrawn and the balance of sexes is established or at such an optimal catch quota at which the sex ratio is shifted towards breeding females. Optimal female harvesting, in which the highest number of them are taken, either maintains a preexisting shortage of adult males or leads to an excess of males or the fixing of a sex balance. We find that, depending on the population parameters for all considered harvesting strategies, the hydra effect can observe, i. e., the equilibrium size of the exploited sex and age-specific group (after reproduction) can increase with the growth of harvesting intensity. The selective harvesting, due to which the hydra effect occurs, simultaneously leads to an increase remaining population size and the number of harvested individuals. At the same time, the size of the exploited group after reproduction can become even more than without exploitation. Equilibrium harvesting with the optimal harvest rate that maximizes yield leads to a population size decrease. The effect of hydra is at lower values of the catch quota than the optimal harvest rate. At the same time, the consequence of the hydra effect may be a higher abundance of the age-sex group under optimal exploitation compared to the level observed in the absence of harvesting.
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The model of the rationale for the focus of border security efforts at the state level
Computer Research and Modeling, 2019, v. 11, no. 1, pp. 187-196Views (last year): 26.The most important principle of military science and border security is the principle of concentrating the main efforts on the main directions and tasks. At the tactical level, there are many mathematical models for computing the optimal resource allocation by directions and objects, whereas at the state level there are no corresponding models. Using the statistical data on the results of the protection of the US border, an exponential type border production function parameter is calculated that reflects the organizational and technological capabilities of the border guard. The production function determines the dependence of the probability of detaining offenders from the density of border guards per kilometer of the border. Financial indicators in the production function are not taken into account, as the border maintenance budget and border equipment correlate with the number of border agents. The objective function of the border guards is defined — the total prevented damage from detained violators taking into account their expected danger for the state and society, which is to be maximized. Using Slater's condition, the solution of the problem was found — optimal density of border guard was calculated for the regions of the state. Having a model of resource allocation, the example of the three border regions of the United States has also solved the reverse problem — threats in the regions have been assessed based on the known allocation of resources. The expected danger from an individual offender on the US-Canada border is 2–5 times higher than from an offender on the US-Mexican border. The results of the calculations are consistent with the views of US security experts: illegal migrants are mostly detained on the US-Mexican border, while potential terrorists prefer to use other channels of penetration into the US (including the US-Canadian border), where the risks of being detained are minimal. Also, the results of the calculations are consistent with the established practice of border protection: in 2013 the number of border guards outside the checkpoints on the US-Mexican border increased by 2 times compared with 2001, while on the American-Canadian border — 4 times. The practice of border protection and the views of specialists give grounds for approval of the verification of the model.
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Mathematicity of physics is surprising, but it enables us to understand the laws of nature through the analysis of mathematical structures describing it. This concerns, however, only physics. The degree of the mathematization of biology is low, and attempts to mathematize it are limited to the application of mathematical methods used for the description of physical systems. When doing so, we are likely to commit an error of attributing to biological systems features that they do not have. Some argue that biology does need new mathematical methods conforming to its needs, and not known from physics. However, because of a specific complexity of biological systems, we should speak of their algorithmicity, rather than of their mathematicity. As an example of algorithmic approach one can indicate so called individual-based models used in ecology to describe population dynamics or fractal models applied to describe geometrical complexity of such biological structures as trees.
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International Interdisciplinary Conference "Mathematics. Computing. Education"