Результаты поиска по 'mathematical modelling':
Найдено статей: 316
  1. Polyakov S.V., Podryga V.O.
    A study of nonlinear processes at the interface between gas flow and the metal wall of a microchannel
    Computer Research and Modeling, 2022, v. 14, no. 4, pp. 781-794

    The work is devoted to the study of the influence of nonlinear processes in the boundary layer on the general nature of gas flows in microchannels of technical systems. Such a study is actually concerned with nanotechnology problems. One of the important problems in this area is the analysis of gas flows in microchannels in the case of transient and supersonic flows. The results of this analysis are important for the gas-dynamic spraying techique and for the synthesis of new nanomaterials. Due to the complexity of the implementation of full-scale experiments on micro- and nanoscale, they are most often replaced by computer simulations. The efficiency of computer simulations is achieved by both the use of new multiscale models and the combination of mesh and particle methods. In this work, we use the molecular dynamics method. It is applied to study the establishment of a gas microflow in a metal channel. Nitrogen was chosen as the gaseous medium. The metal walls of the microchannels consisted of nickel atoms. In numerical experiments, the accommodation coefficients were calculated at the boundary between the gas flow and the metal wall. The study of the microsystem in the boundary layer made it possible to form a multicomponent macroscopic model of the boundary conditions. This model was integrated into the macroscopic description of the flow based on a system of quasi-gas-dynamic equations. On the basis of such a transformed gas-dynamic model, calculations of microflow in real microsystem were carried out. The results were compared with the classical calculation of the flow, which does not take into account nonlinear processes in the boundary layer. The comparison showed the need to use the developed model of boundary conditions and its integration with the classical gas-dynamic approach.

  2. Koubassova N.A., Tsaturyan A.K.
    Molecular dynamics assessment of the mechanical properties of fibrillar actin
    Computer Research and Modeling, 2022, v. 14, no. 5, pp. 1081-1092

    Actin is a conserved structural protein that is expressed in all eukaryotic cells. When polymerized, it forms long filaments of fibrillar actin, or F-actin, which are involved in the formation of the cytoskeleton, in muscle contraction and its regulation, and in many other processes. The dynamic and mechanical properties of actin are important for interaction with other proteins and the realization of its numerous functions in the cell. We performed 204.8 ns long molecular dynamics (MD) simulations of an actin filament segment consisting of 24 monomers in the absence and the presence of MgADP at 300 K in the presence of a solvent and at physiological ionic strength using the AMBER99SBILDN and CHARMM36 force fields in the GROMACS software environment, using modern structural models as the initial structure obtained by high-resolution cryoelectron microscopy. MD calculations have shown that the stationary regime of fluctuations in the structure of the F-actin long segment is developed 80–100 ns after the start of the MD trajectory. Based on the results of MD calculations, the main parameters of the actin helix and its bending, longitudinal, and torsional stiffness were estimated using a section of the calculation model that is far enough away from its ends. The estimated subunit axial (2.72–2.75 nm) and angular (165–168) translation of the F-actin helix, its bending (2.8–4.7 · 10−26 N·m2), longitudinal (36–47·10−9 N), and torsional (2.6–3.1·10−26 N·m2) stiffness are in good agreement with the results of the most reliable experiments. The results of MD calculations have shown that modern structural models of F-actin make it possible to accurately describe its dynamics and mechanical properties, provided that computational models contain a sufficiently large number of monomers, modern force fields, and relatively long MD trajectories are used. The inclusion of actin partner proteins, in particular, tropomyosin and troponin, in the MD model can help to understand the molecular mechanisms of such important processes as the regulation of muscle contraction.

  3. Tokarev A.A., Rodin N.O., Volpert V.A.
    Bistability and damped oscillations in the homogeneous model of viral infection
    Computer Research and Modeling, 2023, v. 15, no. 1, pp. 111-124

    The development of a viral infection in the organism is a complex process which depends on the competition race between virus replication in the host cells and the immune response. To study different regimes of infection progression, we analyze the general mathematical model of immune response to viral infection. The model consists of two ODEs for virus and immune cells non-dimensionalized concentrations. The proliferation rate of immune cells in the model is represented by a bell-shaped function of the virus concentration. This function increases for small virus concentrations describing the antigen-stimulated clonal expansion of immune cells, and decreases for sufficiently high virus concentrations describing down-regulation of immune cells proliferation by the infection. Depending on the virus virulence, strength of the immune response, and the initial viral load, the model predicts several scenarios: (a) infection can be completely eliminated, (b) it can remain at a low level while the concentration of immune cells is high; (c) immune cells can be essentially exhausted, or (d) completely exhausted, which is accompanied (c, d) by high virus concentration. The analysis of the model shows that virus concentration can oscillate as it gradually converges to its equilibrium value. We show that the considered model can be obtained by the reduction of a more general model with an additional equation for the total viral load provided that this equation is fast. In the case of slow kinetics of the total viral load, this more general model should be used.

  4. An approximate mathematical model of blood flow in an axisymmetric blood vessel is studied. Such a vessel is understood as an infinitely long circular cylinder, the walls of which consist of elastic rings. Blood is considered as an incompressible fluid flowing in this cylinder. Increased pressure causes radially symmetrical stretching of the elastic rings. Following J. Lamb, the rings are located close to each other so that liquid does not flow between them. To mentally realize this, it is enough to assume that the rings are covered with an impenetrable film that does not have elastic properties. Only rings have elasticity. The considered model of blood flow in a blood vessel consists of three equations: the continuity equation, the law of conservation of momentum and the equation of state. An approximate procedure for reducing the equations under consideration to the Korteweg – de Vries (KdV) equation is considered, which was not fully considered by J. Lamb, only to establish the dependence of the coefficients of the KdV equation on the physical parameters of the considered model of incompressible fluid flow in an axisymmetric vessel. From the KdV equation, by a standard transition to traveling waves, ODEs of the third, second and first orders are obtained, respectively. Depending on the different cases of arrangement of the three stationary solutions of the first-order ODE, a cnoidal wave and a soliton are standardly obtained. The main attention is paid to an unbounded periodic solution, which we call a degenerate cnoidal wave. Mathematically, cnoidal waves are described by elliptic integrals with parameters defining amplitudes and periods. Soliton and degenerate cnoidal wave are described by elementary functions. The hemodynamic meaning of these types of decisions is indicated. Due to the fact that the sets of solutions to first-, second- and third-order ODEs do not coincide, it has been established that the Cauchy problem for second- and third-order ODEs can be specified at all points, and for first-order ODEs only at points of growth or decrease. The Cauchy problem for a first-order ODE cannot be specified at extremum points due to the violation of the Lipschitz condition. The degeneration of the cnoidal wave into a degenerate cnoidal wave, which can lead to rupture of the vessel walls, is numerically illustrated. The table below describes two modes of approach of a cnoidal wave to a degenerate cnoidal wave.

  5. Gerasimov A.N., Shpitonkov M.I.
    Mathematical model of the parasite – host system with distributed immunity retention time
    Computer Research and Modeling, 2024, v. 16, no. 3, pp. 695-711

    The COVID-19 pandemic has caused increased interest in mathematical models of the epidemic process, since only statistical analysis of morbidity does not allow medium-term forecasting in a rapidly changing situation.

    Among the specific features of COVID-19 that need to be taken into account in mathematical models are the heterogeneity of the pathogen, repeated changes in the dominant variant of SARS-CoV-2, and the relative short duration of post-infectious immunity.

    In this regard, solutions to a system of differential equations for a SIR class model with a heterogeneous duration of post-infectious immunity were analytically studied, and numerical calculations were carried out for the dynamics of the system with an average duration of post-infectious immunity of the order of a year.

    For a SIR class model with a heterogeneous duration of post-infectious immunity, it was proven that any solution can be continued indefinitely in time in a positive direction without leaving the domain of definition of the system.

    For the contact number $R_0 \leqslant 1$, all solutions tend to a single trivial stationary solution with a zero share of infected people, and for $R_0 > 1$, in addition to the trivial solution, there is also a non-trivial stationary solution with non-zero shares of infected and susceptible people. The existence and uniqueness of a non-trivial stationary solution for $R_0 > 1$ was proven, and it was also proven that it is a global attractor.

    Also, for several variants of heterogeneity, the eigenvalues of the rate of exponential convergence of small deviations from a nontrivial stationary solution were calculated.

    It was found that for contact number values corresponding to COVID-19, the phase trajectory has the form of a twisting spiral with a period length of the order of a year.

    This corresponds to the real dynamics of the incidence of COVID-19, in which, after several months of increasing incidence, a period of falling begins. At the same time, a second wave of incidence of a smaller amplitude, as predicted by the model, was not observed, since during 2020–2023, approximately every six months, a new variant of SARS-CoV-2 appeared, which was more infectious than the previous one, as a result of which the new variant replaced the previous one and became dominant.

  6. Pivovarova A.S., Steryakov A.A.
    Modeling the behavior proceeding market crash in a hierarchically organized financial market
    Computer Research and Modeling, 2011, v. 3, no. 2, pp. 215-222

    We consider the hierarchical model of financial crashes introduced by A. Johansen and D. Sornette which reproduces the log-periodic power law behavior of the price before the critical point. In order to build the generalization of this model we introduce the dependence of an influence exponent on an ultrametric distance between agents. Much attention is being paid to a problem of critical point universality which is investigated by comparison of probability density functions of the crash times corresponding to systems with various total numbers of agents.

    Views (last year): 1.
  7. Kuzmin R.N., Maximov D.S., Savenkova N.P., Shobukhov A.V.
    Centrally symmetric steady states in a model of electrodiffusion
    Computer Research and Modeling, 2012, v. 4, no. 1, pp. 99-104

    We study the centrally symmetric mathematical model of electrodiffusion. This model describes in particular the transport of the Li+ ions in certain electrochemical current sources. We demonstrate that the steady state solution of the considered model exists and is unique if the boundary values of the ion concentration and electric potential are given. This solution also proves to be the stable attractor of the time-dependent solutions with different initial value distributions.

    Views (last year): 1.
  8. Kondratyev M.A.
    Forecasting methods and models of disease spread
    Computer Research and Modeling, 2013, v. 5, no. 5, pp. 863-882

    The number of papers addressing the forecasting of the infectious disease morbidity is rapidly growing due to accumulation of available statistical data. This article surveys the major approaches for the shortterm and the long-term morbidity forecasting. Their limitations and the practical application possibilities are pointed out. The paper presents the conventional time series analysis methods — regression and autoregressive models; machine learning-based approaches — Bayesian networks and artificial neural networks; case-based reasoning; filtration-based techniques. The most known mathematical models of infectious diseases are mentioned: classical equation-based models (deterministic and stochastic), modern simulation models (network and agent-based).

    Views (last year): 71. Citations: 19 (RSCI).
  9. Khavinson M.J., Kulakov M.P.
    Mathematical modeling of the population dynamics of different age-group workers in the regional economy
    Computer Research and Modeling, 2014, v. 6, no. 3, pp. 441-454

    The article deals with the nonlinear model of population dynamics of different ages workers in the regional economy. The model is built on the principles underlying modeling in econophysics. The authors demonstrate the complex dynamics of the model regimes that impose fundamental limits on medium- and long-term forecast of employment in a region. By analogy with the biophysical approach the authors propose a classification of social interactions of the different age-group workers. The model analysis is given for the level of employment among age groups. The verification of the model performs on the statistical data of the Jewish Autonomous Region.

    Views (last year): 4. Citations: 15 (RSCI).
  10. Kosykh N.E., Sviridov N.M., Savin S.Z., Potapova T.P.
    Computer aided analysis of medical image recognition for example of scintigraphy
    Computer Research and Modeling, 2016, v. 8, no. 3, pp. 541-548

    The practical application of nuclear medicine demonstrates the continued information deficiency of the algorithms and programs that provide visualization and analysis of medical images. The aim of the study was to determine the principles of optimizing the processing of planar osteostsintigraphy on the basis of сomputer aided diagnosis (CAD) for analysis of texture descriptions of images of metastatic zones on planar scintigrams of skeleton. A computer-aided diagnosis system for analysis of skeletal metastases based on planar scintigraphy data has been developed. This system includes skeleton image segmentation, calculation of textural, histogram and morphometrical parameters and the creation of a training set. For study of metastatic images’ textural characteristics on planar scintigrams of skeleton was developed the computer program of automatic analysis of skeletal metastases is used from data of planar scintigraphy. Also expert evaluation was used to distinguishing ‘pathological’ (metastatic) from ‘physiological’ (non-metastatic) radiopharmaceutical hyperfixation zones in which Haralick’s textural features were determined: autocorrelation, contrast, ‘forth moment’ and heterogeneity. This program was established on the principles of сomputer aided diagnosis researches planar scintigrams of skeletal patients with metastatic breast cancer hearths hyperfixation of radiopharmaceuticals were identified. Calculated parameters were made such as brightness, smoothness, the third moment of brightness, brightness uniformity, entropy brightness. It has been established that in most areas of the skeleton of histogram values of parameters in pathologic hyperfixation of radiopharmaceuticals predominate over the same values in the physiological. Most often pathological hyperfixation of radiopharmaceuticals as the front and rear fixed scintigramms prevalence of brightness and smoothness of the image brightness in comparison with those of the physiological hyperfixation of radiopharmaceuticals. Separate figures histogram analysis can be used in specifying the diagnosis of metastases in the mathematical modeling and interpretation bone scintigraphy. Separate figures histogram analysis can be used in specifying the diagnosis of metastases in the mathematical modeling and interpretation bone scintigraphy.

    Views (last year): 3. Citations: 3 (RSCI).
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International Interdisciplinary Conference "Mathematics. Computing. Education"