All issues

Microarray datasets are highly dimensional, with a small number of collected samples in comparison to thousands of features. This poses a significant challenge that affects the interpretation, applicability and validation of the analytical results. Matrix factorizations have proven to be a useful method for describing data in terms of a small number of meta-features, which reduces noise, while still capturing the essential features of the data. Three novel and mutually relevant methods are presented in this paper: 1) gradient-based matrix factorization with two adaptive learning rates (in accordance with the number of factor matrices) and their automatic updates; 2) nonparametric criterion for the selection of the number of factors; and 3) nonnegative version of the gradient-based matrix factorization which doesn't require any extra computational costs in difference to the existing methods. We demonstrate effectiveness of the proposed methods to the supervised classification of gene expression data.

The paper develops a theory of a new so-called two-parametric approach to the random signals' analysis and processing. A mathematical simulation and the task solutions’ comparison have been implemented for the Gauss and Rice statistical models. The applicability of the Rice statistical model is substantiated for the tasks of data and images processing when the signal’s envelope is being analyzed. A technique is developed and theoretically substantiated for solving the task of the noise suppression and initial image reconstruction by means of joint calculation of both statistical parameters — an initial signal’s mean value and noise dispersion — based on the maximum likelihood method within the Rice distribution. The peculiarities of this distribution’s likelihood function and the following from them possibilities of the signal and noise estimation have been analyzed.

In this work we consider a possibility to use the conception of $(\delta, L)$-model of a function for optimization tasks, whereby solving a primal problem there is a necessity to recover a solution of a dual problem. The conception of $(\delta, L)$-model is based on the conception of $(\delta, L)$-oracle which was proposed by Devolder–Glineur–Nesterov, herewith the authors proposed approximate a function with an upper bound using a convex quadratic function with some additive noise $\delta$. They managed to get convex quadratic upper bounds with noise even for nonsmooth functions. The conception of $(\delta, L)$-model continues this idea by using instead of a convex quadratic function a more complex convex function in an upper bound. Possibility to recover the solution of a dual problem gives great benefits in different problems, for instance, in some cases, it is faster to find a solution in a primal problem than in a dual problem. Note that primal-dual methods are well studied, but usually each class of optimization problems has its own primal-dual method. Our goal is to develop a method which can find solutions in different classes of optimization problems. This is realized through the use of the conception of $(\delta, L)$-model and adaptive structure of our methods. Thereby, we developed primal-dual adaptive gradient method and fast gradient method with $(\delta, L)$-model and proved convergence rates of the methods, moreover, for some classes of optimization problems the rates are optimal. The main idea is the following: we find a dual solution to an approximation of a primal problem using the conception of $(\delta, L)$-model. It is much easier to find a solution to an approximated problem, however, we have to do it in each step of our method, thereby the principle of “divide and conquer” is realized.

The paper concerns the study of the Rice statistical distribution’s peculiarities which cause the possibility of its efficient application in solving the tasks of high precision phase measuring in optics. The strict mathematical proof of the Rician distribution’s stable character is provided in the example of the differential signal consideration, namely: it has been proved that the sum or the difference of two Rician signals also obey the Rice distribution. Besides, the formulas have been obtained for the parameters of the resulting summand or differential signal’s Rice distribution. Based upon the proved stable character of the Rice distribution a new original technique of the high precision measuring of the two quasi-harmonic signals’ phase shift has been elaborated in the paper. This technique is grounded in the statistical analysis of the measured sampled data for the amplitudes of the both signals and for the amplitude of the third signal which is equal to the difference of the two signals to be compared in phase. The sought-for phase shift of two quasi-harmonic signals is being calculated from the geometrical considerations as an angle of a triangle which sides are equal to the three indicated signals’ amplitude values having been reconstructed against the noise background. Thereby, the proposed technique of measuring the phase shift using the differential signal analysis, is based upon the amplitude measurements only, what significantly decreases the demands to the equipment and simplifies the technique implementation in practice. The paper provides both the strict mathematical substantiation of a new phase shift measuring technique and the results of its numerical testing. The elaborated method of high precision phase measurements may be efficiently applied for solving a wide circle of tasks in various areas of science and technology, in particular — at distance measuring, in communication systems, in navigation, etc.

In this paper, we consider the conjugate gradient method for solving the problem of minimizing a quadratic function with additive noise in the gradient. Three concepts of noise were considered: antagonistic noise in the linear term, stochastic noise in the linear term and noise in the quadratic term, as well as combinations of the first and second with the last. It was experimentally obtained that error accumulation is absent for any of the considered concepts, which differs from the folklore opinion that, as in accelerated methods, error accumulation must take place. The paper gives motivation for why the error may not accumulate. The dependence of the solution error both on the magnitude (scale) of the noise and on the size of the solution using the conjugate gradient method was also experimentally investigated. Hypotheses about the dependence of the error in the solution on the noise scale and the size (2-norm) of the solution are proposed and tested for all the concepts considered. It turned out that the error in the solution (by function) linearly depends on the noise scale. The work contains graphs illustrating each individual study, as well as a detailed description of numerical experiments, which includes an account of the methods of noise of both the vector and the matrix.

The paper provides a solution of a task of calculating the parameters of a Rician distributed signal on the basis of the maximum likelihood principle in limiting cases of large and small values of the signal-tonoise ratio. The analytical formulas are obtained for the solution of the maximum likelihood equations’ system for the required signal and noise parameters for both the one-parameter approximation, when only one parameter is being calculated on the assumption that the second one is known a-priori, and for the two-parameter task, when both parameters are a-priori unknown. The direct calculation of required signal and noise parameters by formulas allows escaping the necessity of time resource consuming numerical solving the nonlinear equations’ s system and thus optimizing the duration of computer processing of signals and images. There are presented the results of computer simulation of a task confirming the theoretical conclusions. The task is meaningful for the purposes of Rician data processing, in particular, magnetic-resonance visualization.

The paper provides a solution of the two-parameter task of joint signal and noise estimation at data analysis within the conditions of the Rice distribution by the techniques of mathematical statistics: the maximum likelihood method and the variants of the method of moments. The considered variants of the method of moments include the following techniques: the joint signal and noise estimation on the basis of measuring the 2-nd and the 4-th moments (MM24) and on the basis of measuring the 1-st and the 2-nd moments (MM12). For each of the elaborated methods the explicit equations’ systems have been obtained for required parameters of the signal and noise. An important mathematical result of the investigation consists in the fact that the solution of the system of two nonlinear equations with two variables — the sought for signal and noise parameters — has been reduced to the solution of just one equation with one unknown quantity what is important from the view point of both the theoretical investigation of the proposed technique and its practical application, providing the possibility of essential decreasing the calculating resources required for the technique’s realization. The implemented theoretical analysis has resulted in an important practical conclusion: solving the two-parameter task does not lead to the increase of required numerical resources if compared with the one-parameter approximation. The task is meaningful for the purposes of the rician data processing, in particular — the image processing in the systems of magnetic-resonance visualization. The theoretical conclusions have been confirmed by the results of the numerical experiment.

The paper presents the results of the fundamental research directed on the theoretical study and computer simulation of peculiarities of the quasi-harmonic signal’s phase statistical distribution. The quasi-harmonic signal is known to be formed as a result of the Gaussian noise impact on the initially harmonic signal. By means of the mathematical analysis the formulas have been obtained in explicit form for the principle characteristics of this distribution, namely: for the cumulative distribution function, the probability density function, the likelihood function. As a result of the conducted computer simulation the dependencies of these functions on the phase distribution parameters have been analyzed. The paper elaborates the methods of estimating the phase distribution parameters which contain the information about the initial, undistorted signal. It has been substantiated that the task of estimating the initial value of the phase of quasi-harmonic signal can be efficiently solved by averaging the results of the sampled measurements. As for solving the task of estimating the second parameter of the phase distribution, namely — the parameter, determining the signal level respectively the noise level — a maximum likelihood technique is proposed to be applied. The graphical illustrations are presented that have been obtained by means of the computer simulation of the principle characteristics of the phase distribution under the study. The existence and uniqueness of the likelihood function’s maximum allow substantiating the possibility and the efficiency of solving the task of estimating signal’s level relative to noise level by means of the maximum likelihood technique. The elaborated method of estimating the un-noised signal’s level relative to noise, i. e. the parameter characterizing the signal’s intensity on the basis of measurements of the signal’s phase is an original and principally new technique which opens perspectives of usage of the phase measurements as a tool of the stochastic data analysis. The presented investigation is meaningful for solving the task of determining the phase and the signal’s level by means of the statistical processing of the sampled phase measurements. The proposed methods of the estimation of the phase distribution’s parameters can be used at solving various scientific and technological tasks, in particular, in such areas as radio-physics, optics, radiolocation, radio-navigation, metrology.

Conjugate gradient algorithms represent an important class of unconstrained optimization algorithms with strong local and global convergence properties and simple memory requirements. These algorithms have advantages that place them between the steep regression method and Newton’s algorithm because they require calculating the first derivatives only and do not require calculating and storing the second derivatives that Newton’s algorithm needs. They are also faster than the steep descent algorithm, meaning that they have overcome the slow convergence of this algorithm, and it does not need to calculate the Hessian matrix or any of its approximations, so it is widely used in optimization applications. This study proposes a novel method for image restoration by fusing the convex combination method with the hybrid (CG) method to create a hybrid three-term (CG) algorithm. Combining the features of both the Fletcher and Revees (FR) conjugate parameter and the hybrid Fletcher and Revees (FR), we get the search direction conjugate parameter. The search direction is the result of concatenating the gradient direction, the previous search direction, and the gradient from the previous iteration. We have shown that the new algorithm possesses the properties of global convergence and descent when using an inexact search line, relying on the standard Wolfe conditions, and using some assumptions. To guarantee the effectiveness of the suggested algorithm and processing image restoration problems. The numerical results of the new algorithm show high efficiency and accuracy in image restoration and speed of convergence when used in image restoration problems compared to Fletcher and Revees (FR) and three-term Fletcher and Revees (TTFR).

The paper provides a review of the existing methods of signals’ processing within the conditions of the Rice statistical model applicability. There are considered the principle development directions, the existing limitations and the improvement possibilities concerning the methods of solving the tasks of noise suppression and analyzed signals’ filtration by the example of magnetic-resonance visualization. A conception of a new approach to joint calculation of Rician signal’s both parameters has been developed based on the method of moments in two variants of its implementation. The computer simulation and the comparative analysis of the obtained numerical results have been conducted.