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Microarray datasets are highly dimensional, with a small number of collected samples in comparison to thousands of features. This poses a significant challenge that affects the interpretation, applicability and validation of the analytical results. Matrix factorizations have proven to be a useful method for describing data in terms of a small number of meta-features, which reduces noise, while still capturing the essential features of the data. Three novel and mutually relevant methods are presented in this paper: 1) gradient-based matrix factorization with two adaptive learning rates (in accordance with the number of factor matrices) and their automatic updates; 2) nonparametric criterion for the selection of the number of factors; and 3) nonnegative version of the gradient-based matrix factorization which doesn't require any extra computational costs in difference to the existing methods. We demonstrate effectiveness of the proposed methods to the supervised classification of gene expression data.

The paper develops a theory of a new so-called two-parametric approach to the random signals' analysis and processing. A mathematical simulation and the task solutions’ comparison have been implemented for the Gauss and Rice statistical models. The applicability of the Rice statistical model is substantiated for the tasks of data and images processing when the signal’s envelope is being analyzed. A technique is developed and theoretically substantiated for solving the task of the noise suppression and initial image reconstruction by means of joint calculation of both statistical parameters — an initial signal’s mean value and noise dispersion — based on the maximum likelihood method within the Rice distribution. The peculiarities of this distribution’s likelihood function and the following from them possibilities of the signal and noise estimation have been analyzed.

In this work we consider a possibility to use the conception of $(\delta, L)$-model of a function for optimization tasks, whereby solving a primal problem there is a necessity to recover a solution of a dual problem. The conception of $(\delta, L)$-model is based on the conception of $(\delta, L)$-oracle which was proposed by Devolder–Glineur–Nesterov, herewith the authors proposed approximate a function with an upper bound using a convex quadratic function with some additive noise $\delta$. They managed to get convex quadratic upper bounds with noise even for nonsmooth functions. The conception of $(\delta, L)$-model continues this idea by using instead of a convex quadratic function a more complex convex function in an upper bound. Possibility to recover the solution of a dual problem gives great benefits in different problems, for instance, in some cases, it is faster to find a solution in a primal problem than in a dual problem. Note that primal-dual methods are well studied, but usually each class of optimization problems has its own primal-dual method. Our goal is to develop a method which can find solutions in different classes of optimization problems. This is realized through the use of the conception of $(\delta, L)$-model and adaptive structure of our methods. Thereby, we developed primal-dual adaptive gradient method and fast gradient method with $(\delta, L)$-model and proved convergence rates of the methods, moreover, for some classes of optimization problems the rates are optimal. The main idea is the following: we find a dual solution to an approximation of a primal problem using the conception of $(\delta, L)$-model. It is much easier to find a solution to an approximated problem, however, we have to do it in each step of our method, thereby the principle of “divide and conquer” is realized.

The paper concerns the study of the Rice statistical distribution’s peculiarities which cause the possibility of its efficient application in solving the tasks of high precision phase measuring in optics. The strict mathematical proof of the Rician distribution’s stable character is provided in the example of the differential signal consideration, namely: it has been proved that the sum or the difference of two Rician signals also obey the Rice distribution. Besides, the formulas have been obtained for the parameters of the resulting summand or differential signal’s Rice distribution. Based upon the proved stable character of the Rice distribution a new original technique of the high precision measuring of the two quasi-harmonic signals’ phase shift has been elaborated in the paper. This technique is grounded in the statistical analysis of the measured sampled data for the amplitudes of the both signals and for the amplitude of the third signal which is equal to the difference of the two signals to be compared in phase. The sought-for phase shift of two quasi-harmonic signals is being calculated from the geometrical considerations as an angle of a triangle which sides are equal to the three indicated signals’ amplitude values having been reconstructed against the noise background. Thereby, the proposed technique of measuring the phase shift using the differential signal analysis, is based upon the amplitude measurements only, what significantly decreases the demands to the equipment and simplifies the technique implementation in practice. The paper provides both the strict mathematical substantiation of a new phase shift measuring technique and the results of its numerical testing. The elaborated method of high precision phase measurements may be efficiently applied for solving a wide circle of tasks in various areas of science and technology, in particular — at distance measuring, in communication systems, in navigation, etc.

In this paper, we consider the conjugate gradient method for solving the problem of minimizing a quadratic function with additive noise in the gradient. Three concepts of noise were considered: antagonistic noise in the linear term, stochastic noise in the linear term and noise in the quadratic term, as well as combinations of the first and second with the last. It was experimentally obtained that error accumulation is absent for any of the considered concepts, which differs from the folklore opinion that, as in accelerated methods, error accumulation must take place. The paper gives motivation for why the error may not accumulate. The dependence of the solution error both on the magnitude (scale) of the noise and on the size of the solution using the conjugate gradient method was also experimentally investigated. Hypotheses about the dependence of the error in the solution on the noise scale and the size (2-norm) of the solution are proposed and tested for all the concepts considered. It turned out that the error in the solution (by function) linearly depends on the noise scale. The work contains graphs illustrating each individual study, as well as a detailed description of numerical experiments, which includes an account of the methods of noise of both the vector and the matrix.

The paper provides a solution of a task of calculating the parameters of a Rician distributed signal on the basis of the maximum likelihood principle in limiting cases of large and small values of the signal-tonoise ratio. The analytical formulas are obtained for the solution of the maximum likelihood equations’ system for the required signal and noise parameters for both the one-parameter approximation, when only one parameter is being calculated on the assumption that the second one is known a-priori, and for the two-parameter task, when both parameters are a-priori unknown. The direct calculation of required signal and noise parameters by formulas allows escaping the necessity of time resource consuming numerical solving the nonlinear equations’ s system and thus optimizing the duration of computer processing of signals and images. There are presented the results of computer simulation of a task confirming the theoretical conclusions. The task is meaningful for the purposes of Rician data processing, in particular, magnetic-resonance visualization.

The paper provides a solution of the two-parameter task of joint signal and noise estimation at data analysis within the conditions of the Rice distribution by the techniques of mathematical statistics: the maximum likelihood method and the variants of the method of moments. The considered variants of the method of moments include the following techniques: the joint signal and noise estimation on the basis of measuring the 2-nd and the 4-th moments (MM24) and on the basis of measuring the 1-st and the 2-nd moments (MM12). For each of the elaborated methods the explicit equations’ systems have been obtained for required parameters of the signal and noise. An important mathematical result of the investigation consists in the fact that the solution of the system of two nonlinear equations with two variables — the sought for signal and noise parameters — has been reduced to the solution of just one equation with one unknown quantity what is important from the view point of both the theoretical investigation of the proposed technique and its practical application, providing the possibility of essential decreasing the calculating resources required for the technique’s realization. The implemented theoretical analysis has resulted in an important practical conclusion: solving the two-parameter task does not lead to the increase of required numerical resources if compared with the one-parameter approximation. The task is meaningful for the purposes of the rician data processing, in particular — the image processing in the systems of magnetic-resonance visualization. The theoretical conclusions have been confirmed by the results of the numerical experiment.

The paper provides a review of the existing methods of signals’ processing within the conditions of the Rice statistical model applicability. There are considered the principle development directions, the existing limitations and the improvement possibilities concerning the methods of solving the tasks of noise suppression and analyzed signals’ filtration by the example of magnetic-resonance visualization. A conception of a new approach to joint calculation of Rician signal’s both parameters has been developed based on the method of moments in two variants of its implementation. The computer simulation and the comparative analysis of the obtained numerical results have been conducted.

This article explores a method of machine learning based on the theory of random functions. One of the main problems of this method is that decision rule of a model becomes more complicated as the number of training dataset examples increases. The decision rule of the model is the most probable realization of a random function and it's represented as a polynomial with the number of terms equal to the number of training examples. In this article we will show the quick way of the number of training dataset examples reduction and, accordingly, the complexity of the decision rule. Reducing the number of examples of training dataset is due to the search and removal of weak elements that have little effect on the final form of the decision function, and noise sampling elements. For each $(x_i,y_i)$-th element sample was introduced the concept of value, which is expressed by the deviation of the estimated value of the decision function of the model at the point $x_i$, built without the $i$-th element, from the true value $y_i$. Also we show the possibility of indirect using weak elements in the process of training model without increasing the number of terms in the decision function. At the experimental part of the article, we show how changed amount of data affects to the ability of the method of generalizing in the classification task.

The article deals with the development of the noise-reduction algorithm based on anisotropic nonlinear data filtering of computed tomography (CT). Analysis of domestic and foreign literature has shown that the most effective algorithms for noise reduction of CT data use complex methods for analyzing and processing data, such as bilateral, adaptive, three-dimensional and other types of filtrations. However, a combination of such techniques is rarely used in practice due to long processing time per slice. In this regard, it was decided to develop an efficient and fast algorithm for noise-reduction based on simplified bilateral filtration method with three-dimensional data accumulation. The algorithm was developed on C ++11 programming language in Microsoft Visual Studio 2015. The main difference of the developed noise reduction algorithm is the use an improved mathematical model of CT noise, based on the distribution of Poisson and Gauss from the logarithmic value, developed earlier by our team. This allows a more accurate determination of the noise level and, thus, the threshold of data processing. As the result of the noise reduction algorithm, processed CT data with lower noise level were obtained. Visual evaluation of the data showed the increased information content of the processed data, compared to original data, the clarity of the mapping of homogeneous regions, and a significant reduction in noise in processing areas. Assessing the numerical results of the algorithm showed a decrease in the standard deviation (SD) level by more than 6 times in the processed areas, and high rates of the determination coefficient showed that the data were not distorted and changed only due to the removal of noise. Usage of newly developed context dynamic threshold made it possible to decrease SD level on every area of data. The main difference of the developed threshold is its simplicity and speed, achieved by preliminary estimation of the data array and derivation of the threshold values that are put in correspondence with each pixel of the CT. The principle of its work is based on threshold criteria, which fits well both into the developed noise reduction algorithm based on anisotropic nonlinear filtration, and another algorithm of noise-reduction. The algorithm successfully functions as part of the MultiVox workstation and is being prepared for implementation in a single radiological network of the city of Moscow.