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Diffusion–reaction–advection equations for the predator–prey system in a heterogeneous environment
Computer Research and Modeling, 2021, v. 13, no. 6, pp. 1161-1176We analyze variants of considering the inhomogeneity of the environment in computer modeling of the dynamics of a predator and prey based on a system of reaction-diffusion–advection equations. The local interaction of species (reaction terms) is described by the logistic law for the prey and the Beddington –DeAngelis functional response, special cases of which are the Holling type II functional response and the Arditi – Ginzburg model. We consider a one-dimensional problem in space for a heterogeneous resource (carrying capacity) and three types of taxis (the prey to resource and from the predator, the predator to the prey). An analytical approach is used to study the stability of stationary solutions in the case of local interaction (diffusionless approach). We employ the method of lines to study diffusion and advective processes. A comparison of the critical values of the mortality parameter of predators is given. Analysis showed that at constant coefficients in the Beddington –DeAngelis model, critical values are variable along the spatial coordinate, while we do not observe this effect for the Arditi –Ginzburg model. We propose a modification of the reaction terms, which makes it possible to take into account the heterogeneity of the resource. Numerical results on the dynamics of species for large and small migration coefficients are presented, demonstrating a decrease in the influence of the species of local members on the emerging spatio-temporal distributions of populations. Bifurcation transitions are analyzed when changing the parameters of diffusion–advection and reaction terms.
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Modeling of plankton community state with density-dependent death and spatial activity of zooplankton
Computer Research and Modeling, 2016, v. 8, no. 3, pp. 549-560Views (last year): 6.A vertically distributed three-component model of marine ecosystem is considered. State of the plankton community with nutrients is analyzed under the active movement of zooplankton in a vertical column of water. The necessary conditions of the Turing instability in the vicinity of the spatially homogeneous equilibrium are obtained. Stability of the spatially homogeneous equilibrium, the Turing instability and the oscillatory instability are examined depending on the biological characteristics of zooplankton and spatial movement of plankton. It is shown that at low values of zooplankton grazing rate and intratrophic interaction rate the system is Turing instable when the taxis rate is low. Stabilization occurs either through increased decline of zooplankton either by increasing the phytoplankton diffusion. With the increasing rate of consumption of phytoplankton range of parameters that determine the stability is reduced. A type of instability depends on the phytoplankton diffusion. For large values of diffusion oscillatory instability is observed, with a decrease in the phytoplankton diffusion zone of Turing instability is increases. In general, if zooplankton grazing rate is faster than phytoplankton growth rate the spatially homogeneous equilibrium is Turing instable or oscillatory instable. Stability is observed only at high speeds of zooplankton departure or its active movements. With the increase in zooplankton search activity spatial distribution of populations becomes more uniform, increasing the rate of diffusion leads to non-uniform spatial distribution. However, under diffusion the total number of the population is stabilized when the zooplankton grazing rate above the rate of phytoplankton growth. In general, at low rate of phytoplankton consumption the spatial structures formation is possible at low rates of zooplankton decline and diffusion of all the plankton community. With the increase in phytoplankton predation rate the phytoplankton diffusion and zooplankton spatial movement has essential effect on the spatial instability.
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Population waves and their bifurcations in a model “active predator – passive prey”
Computer Research and Modeling, 2020, v. 12, no. 4, pp. 831-843Our purpose is to study the spatio-temporal population wave behavior observed in the predator-prey system. It is assumed that predators move both directionally and randomly, and prey spread only diffusely. The model does not take into account demographic processes in the predator population; it’s total number is constant and is a parameter. The variables of the model are the prey and predator densities and the predator speed, which are connected by a system of three reaction – diffusion – advection equations. The system is considered on an annular range, that is the periodic conditions are set at the boundaries of the interval. We have studied the bifurcations of wave modes arising in the system when two parameters are changed — the total number of predators and their taxis acceleration coefficient.
The main research method is a numerical analysis. The spatial approximation of the problem in partial derivatives is performed by the finite difference method. Integration of the obtained system of ordinary differential equations in time is carried out by the Runge –Kutta method. The construction of the Poincare map, calculation of Lyapunov exponents, and Fourier analysis are used for a qualitative analysis of dynamic regimes.
It is shown that, population waves can arise as a result of existence of directional movement of predators. The population dynamics in the system changes qualitatively as the total predator number increases. А stationary homogeneous regime is stable at low value of parameter, then it is replaced by self-oscillations in the form of traveling waves. The waveform becomes more complicated as the bifurcation parameter increases; its complexity occurs due to an increase in the number of temporal vibrational modes. A large taxis acceleration coefficient leads to the possibility of a transition from multi-frequency to chaotic and hyperchaotic population waves. A stationary regime without preys becomes stable with a large number of predators.
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Analysis of taxis-driven instability of a predator–prey system through the plankton community model
Computer Research and Modeling, 2020, v. 12, no. 1, pp. 185-199The paper deals with a prey-predator model, which describes the spatiotemporal dynamics of plankton community and the nutrients. The system is described by reaction-diffusion-advection equations in a onedimensional vertical column of water in the surface layer. Advective term of the predator equation represents the vertical movements of zooplankton with velocity, which is assumed to be proportional to the gradient of phytoplankton density. This study aimed to determine the conditions under which these movements (taxis) lead to the spatially heterogeneous structures generated by the system. Assuming diffusion coefficients of all model components to be equal the instability of the system in the vicinity of stationary homogeneous state with respect to small inhomogeneous perturbations is analyzed.
Necessary conditions for the flow-induced instability were obtained through linear stability analysis. Depending on the local kinetics parameters, increasing the taxis rate leads to Turing or wave instability. This fact is in good agreement with conditions for the emergence of spatial and spatiotemporal patterns in a minimal phytoplankton–zooplankton model after flow-induced instabilities derived by other authors. This mechanism of generating patchiness is more general than the Turing mechanism, which depends on strong conditions on the diffusion coefficients.
While the taxis exceeding a certain critical value, the wave number corresponding to the fastest growing mode remains unchanged. This value determines the type of spatial structure. In support of obtained results, the paper presents the spatiotemporal dynamics of the model components demonstrating Turing-type pattern and standing wave pattern.
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Soliton and half-soliton interaction of solitary waves in excitable media with non-linear cross-diffusion
Computer Research and Modeling, 2009, v. 1, no. 1, pp. 109-115Views (last year): 3.We have studied properties of non-linear waves in a mathematical model of a predator – prey system with taxis. We demonstrate that, for systems with negative and positive taxis there typically exists a large region in the parameter space, where the waves demonstrate quasi-soliton interaction; colliding waves can penetrate through each other, and waves can also reflect from impermeable boundaries. In this paper, we use numerical simulations to demonstrate also a new wave phenomenon — a half-soliton interaction of waves, when of two colliding waves, one annihilates and the other continues to propagate. We show that this effect depends on the «ages» or, equivalently, «widths» of the colliding waves.
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Pattern formation of a three-species predator – prey model with prey-taxis and omnivorous predator
Computer Research and Modeling, 2023, v. 15, no. 6, pp. 1617-1634The spatiotemporal dynamics of a three-component model for food web is considered. The model describes the interactions among resource, prey and predator that consumes both species. In a previous work, the author analyzed the model without taking into account spatial heterogeneity. This study continues the model study of the community considering the diffusion of individuals, as well as directed movements of the predator. It is assumed that the predator responds to the spatial change in the resource and prey density by occupying areas where species density is higher or avoiding them. Directed predator movement is described by the advection term, where velocity is proportional to the gradient of resource and prey density. The system is considered on a one-dimensional domain with zero-flux conditions as boundary ones. The spatiotemporal dynamics produced by model is determined by the system stability in the vicinity of stationary homogeneous state with respect to small inhomogeneous perturbations. The paper analyzes the possibility of wave instability leading to the emergence of autowaves and Turing instability, as a result of which stationary patterns are formed. Sufficient conditions for the existence of both types of instability are obtained. The influence of local kinetic parameters on the spatial structure formation was analyzed. It was shown that only Turing instability is possible when taxis on the resource is positive, but with a negative taxis, both types of instability are possible. The numerical solution of the system was found by using method of lines (MOL) with the numerical integration of ODE system by means of splitting techniques. The spatiotemporal dynamics of the system is presented in several variants, realizing one of the instability types. In the case of a positive taxis on the prey, both autowave and stationary structures are formed in smaller regions, with an increase in the region size, Turing structures are not formed. For negative taxis on the prey, stationary patterns is observed in both regions, while periodic structures appear only in larger areas.
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