All issues

Complex geometric organization of subcellular structures such as photosynthetic or mitochondrial membranes determines mechanism of electron and proton transfer processes. We propose new approach in modeling processes, where geometric shape of membranes is accurately taken into account. Different stages of charge transfer process are simulated using different approaches, which are integrated into a combined model. We implemented this model as software which utilizes parallel computations on high-performance clusters and GPUs for better performance.

Mathematical simulation on unsteady natural convection in a closed porous cylindrical cavity having finite thickness heat-conducting solid walls in conditions of convective heat exchange with an environment has been carried out. A boundary-value problem of mathematical physics formulated in dimensionless variables such as stream function and temperature on the basis of Darcy–Boussinesq model has been solved by finite difference method. Effect of a porous medium permeability 10^–5≤Da<∞, ratio between a solid wall thickness and the inner radius of a cylinder 0.1≤h/L≤0.3, a thermal conductivity ratio 1≤λ_1,2≤20 and a dimensionless time on both local distributions of isolines and isotherms and integral complexes reflecting an intensity of convective flow and heat transfer has been analyzed in detail.

The article contains results of modeling a meteor entering dense atmosphere layers using Galerkin’s method and smoother particle hydrodynamics. Numerical simulations were run using experimental data gathered for the Chelyabinsk meteor while varying the meteor material characteristics and its orientation when entering the atmosphere.

In this paper, we present new parallel algorithms for finite element analysis implemented in the FEStudio software framework. We describe the programming model of finite element method, which supports parallelism on different stages of numerical simulations. Using this model, we develop parallel algorithms of numerical integration for dynamic problems and local stiffness matrices. For constructing and solving the systems of equations, we use the CUDA programming platform.

A method and a complex of computer programs are developed for the numerical simulation of the polaron states excitation process in condensed media. A numerical study of the polaron states formation in water under the action of the ultraviolet range laser irradiation is carried out. Our approach allows to reproduce the experimental data of the hydrated electrons formation. A numerical scheme is presented for the solution of the respective system of nonlinear partial differential equations. Parallel implementation is based on the MPI technique. The numerical results are given in comparison with the experimental data and theoretical estimations.

Excitation waves are a prototype of self-organized dynamic patterns in non-equilibrium systems. They develop their own intrinsic dynamics resulting in travelling waves of various forms and shapes. Prominent examples are rotating spirals and scroll waves. It is an interesting and challenging task to find ways to control their behavior by applying external signals, upon which these propagating waves react. We apply external electric fields to such waves in the excitable Belousov–Zhabotinsky (BZ) reaction. Remarkable effects include the change of wave speed, reversal of propagation direction, annihilation of counter-rotating spiral waves and reorientation of scroll wave filaments. These effects can be explained in numerical simulations, where the negatively charged inhibitor bromide plays an essential role. Electric field effects have also been investigated in biological excitable media such as the social amoebae Dictyostelium discoideum. Quite recently we have started to investigate electric field effect in the BZ reaction dissolved in an Aerosol OT water-in-oil microemulsion. A drift of complex patterns can be observed, and also the viscosity and electric conductivity change. We discuss the assumption that this system can act as a model for long range communication between neurons.

The possibility to study temperature fluctuations using URANS approach is studied. The results of numerical simulation of mixing processes for triple-jet sodium at different temperatures are presented. The processes were simulated using FlowVision software system and LMS model for turbulent heat transfer. The analysis and experiment data are compared. Validated was the possibility to determine the energy-carrying frequencies of temperature fluctuations using URANS approach and LMS model when mixing triple-jet sodium at different temperatures.

This work focuses on the application of a method of construction and conversion of three-dimensional computer models for optimization of geometric parameters of simulated devices. The method is used in design of complex technical devices for control system components of an exhaust gas recirculation vehicle – electric EGR valve with magnetic and electric motor. Three-dimensional geometric computer models were created in KOMPAS-3D environment and converted to Maxwell-2D. In Maxwell-2D environment transient electromagnetic processes for further optimization of parameters of therecirculation system devicewere calculated using a criterion of reducing power loss of the automobile engine.

Based on CFD computations we provide the analysis of the possibilities for using modern hybrid distributed computational environments for large complex system simulation. We argue that only multilevel approach supported by new mathematical models of transport properties, dynamical representation of the problem with transport and internal processes separated, and modern paradigm of programming, taking into account specific properties of heterogeneous system, will make it possible to scale the problem effectively.

The article submits wall functions model “FlowVision”. The model allows simulating turbulent flows of fluid and gas over solid impermeable surfaces on different grids. Four turbulence models are considered: $k-\varepsilon$ FlowVision, $k-\varepsilon$ Standard, SST $k-\omega$, SA. Details of implementation of turbulence models in FlowVision software are discussed. Calculations of two test cases are demonstrated.