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This article presents the results of an analytical and computer study of the chaotic evolution of a regular velocity field generated by a large-scale harmonic forcing. The authors obtained an analytical solution for the flow stream function and its derivative quantities (velocity, vorticity, kinetic energy, enstrophy and palinstrophy). Numerical modeling of the flow evolution was carried out using the OpenFOAM software package based on incompressible model, as well as two inhouse implementations of CABARET and McCormack methods employing nearly incompressible formulation. Calculations were carried out on a sequence of nested meshes with 64², 128², 256², 512², 1024² cells for two characteristic (asymptotic) Reynolds numbers characterizing laminar and turbulent evolution of the flow, respectively. Simulations show that blow-up of the analytical solution takes place in both cases. The energy characteristics of the flow are discussed relying upon the energy curves as well as the dissipation rates. For the fine mesh, this quantity turns out to be several orders of magnitude less than its hydrodynamic (viscous) counterpart. Destruction of the regular flow structure is observed for any of the numerical methods, including at the late stages of laminar evolution, when numerically obtained distributions are close to analytics. It can be assumed that the prerequisite for the development of instability is the error accumulated during the calculation process. This error leads to unevenness in the distribution of vorticity and, as a consequence, to the variance vortex intensity and finally leads to chaotization of the flow. To study the processes of vorticity production, we used two integral vorticity-based quantities — integral enstrophy ($\zeta$) and palinstrophy $(P)$. The formulation of the problem with periodic boundary conditions allows us to establish a simple connection between these quantities. In addition, $\zeta$ can act as a measure of the eddy resolution of the numerical method, and palinstrophy determines the degree of production of small-scale vorticity.

A mathematical model for the evolution of microbial populations during prolonged cultivation in a chemostat has been constructed. This model generalizes the sequence of the well-known mathematical models of the evolution, in which such factors of the genetic variability were taken into account as chromosomal mutations, mutations in plasmid genes, the horizontal gene transfer, the plasmid loss due to cellular division and others. Liapunov’s function for the generic model of evolution is constructed. The existence proof of bounded, positive invariant and globally attracting set in the state space of the generic mathematical model for the evolution is presented because of the application of La-Salle’s theorem. The analytic description of this set is given. Numerical methods for estimate of the number of limit sets, its location and following investigation in the mathematical models for evolution are discussed.

For the production of purified final product in chemical engineering used the process of desublimation. For this purpose, the tank is cooled by liquid nitrogen or cold air. The mixture of gases flows inside the tank and is cooled to the condensation or desublimation temperature some components of the gas mixture. The condensed components are deposited on the walls of the tank. The article presents a mathematical model to calculate the cooling air tanks for desublimation of vapours. A mathematical model based on equations of gas dynamics and describes the movement of cooled air in the duct and the heat exchanger with heat exchange and friction. The heat of the phase transition is taken into account in the boundary condition for the heat equation by setting the heat flux. Heat transfer in the walls of the pipe and in the tank wall is described by the nonstationary heat conduction equations. The solution of the system of equations is carried out numerically. The equations of gas dynamics are solved by the method of S. K. Godunov. The heat equation are solved by an implicit finite difference scheme. The article presents the results of calculations of the cooling of two successively installed tanks. The initial temperature of the tanks is equal to 298 K. Cold air flows through the tubing, through the heat exchanger of the first tank, then through conduit to the heat exchanger second tank. During the 20 minutes of tank cool down to operating temperature. The temperature of the walls of the tanks differs from the air temperature not more than 1 degree. The flow of cooling air allows to maintain constant temperature of the walls of the tank in the process of desublimation components from a gas mixture. The results of analytical evaluation of the time of cooling tank and temperature difference between the tank walls and air with the vapor desublimation. Analytical assessment is based on determining the time of heat relaxation temperature of the tank walls. The results of evaluations are satisfactorily coincide with the results of calculations by the present model. The proposed approach allows calculating the cooling tanks with a flow of cold air supplied via the pipeline system.

The Exner equation in conjunction phenomenological sediment transport models is widely used for mathematical modeling non-cohesive river bed. This approach allows to obtain an accurate solution without any difficulty if one models evolution of simple shape bed. However if one models evolution of complex shape bed with unstable soil the numerical instability occurs in some cases. It is difficult to detach this numerical instability from the natural physical instability of bed.

This paper analyses the causes of numerical instability occurring while modeling evolution of complex shape bed by using the Exner equation and phenomenological sediment rate models. The paper shows that two kinds of indeterminateness may occur while solving numerically the Exner equation closed by phenomenological model of sediment transport. The first indeterminateness occurs in the bed area where sediment transport is transit and bed is not changed. The second indeterminateness occurs at the extreme point of bed profile when the sediment rate varies and the bed remains the same. Authors performed the closure of the Exner equation by the analytical sediment transport model, which allowed to transform the Exner equation to parabolic type equation. Analysis of the obtained equation showed that it’s numerical solving does not lead to occurring of the indeterminateness mentioned above. Parabolic form of the transformed Exner equation allows to apply the effective and stable implicit central difference scheme for this equation solving.

The model problem of bed evolution in presence of periodic distribution of the bed shear stress is carried out. The authors used the explicit central difference scheme with and without filtration method application and implicit central difference scheme for numerical solution of the problem. It is shown that the explicit central difference scheme is unstable in the area of the bed profile extremum. Using the filtration method resulted to increased dissipation of the solution. The solution obtained by using the implicit central difference scheme corresponds to the distribution law of bed shear stress and is stable throughout the calculation area.

Mathematical models of gas dynamics and its computational industry, in our opinion, are far from perfect. We will look at this problem from the point of view of a clear probabilistic micro-model of a gas from hard spheres, relying on both the theory of random processes and the classical kinetic theory in terms of densities of distribution functions in phase space, namely, we will first construct a system of nonlinear stochastic differential equations (SDE), and then a generalized random and nonrandom integro-differential Boltzmann equation taking into account correlations and fluctuations. The key feature of the initial model is the random nature of the intensity of the jump measure and its dependence on the process itself.

Briefly recall the transition to increasingly coarse meso-macro approximations in accordance with a decrease in the dimensionalization parameter, the Knudsen number. We obtain stochastic and non-random equations, first in phase space (meso-model in terms of the Wiener — measure SDE and the Kolmogorov – Fokker – Planck equations), and then — in coordinate space (macro-equations that differ from the Navier – Stokes system of equations and quasi-gas dynamics systems). The main difference of this derivation is a more accurate averaging by velocity due to the analytical solution of stochastic differential equations with respect to the Wiener measure, in the form of which an intermediate meso-model in phase space is presented. This approach differs significantly from the traditional one, which uses not the random process itself, but its distribution function. The emphasis is placed on the transparency of assumptions during the transition from one level of detail to another, and not on numerical experiments, which contain additional approximation errors.

The theoretical power of the microscopic representation of macroscopic phenomena is also important as an ideological support for particle methods alternative to difference and finite element methods.

The possibility to simplify the integration of Langevin equation using the variation of correlation between augmentation was researched. The analytical expression for a set of numerical schemes is presented. It’s shown that asymptotic limits for squared velocity depend on step size. The region of convergence and the convergence orders were estimated. It turned out that the incorrect correlation between increments decrease the accuracy down to the level of first-order methods for schemes based on precise solution.

This paper is devoted to the analysis of the effect of additive and parametric noise on the processes occurring in the nerve cell. This study is carried out on the example of the well-known Morris – Lecar model described by the two-dimensional system of ordinary differential equations. One of the main properties of the neuron is the excitability, i.e., the ability to respond to external stimuli with an abrupt change of the electric potential on the cell membrane. This article considers a set of parameters, wherein the model exhibits the class 2 excitability. The dynamics of the system is studied under variation of the external current parameter. We consider two parametric zones: the monostability zone, where a stable equilibrium is the only attractor of the deterministic system, and the bistability zone, characterized by the coexistence of a stable equilibrium and a limit cycle. We show that in both cases random disturbances result in the phenomenon of the stochastic generation of mixed-mode oscillations (i. e., alternating oscillations of small and large amplitudes). In the monostability zone this phenomenon is associated with a high excitability of the system, while in the bistability zone, it occurs due to noise-induced transitions between attractors. This phenomenon is confirmed by changes of probability density functions for distribution of random trajectories, power spectral densities and interspike intervals statistics. The action of additive and parametric noise is compared. We show that under the parametric noise, the stochastic generation of mixed-mode oscillations is observed at lower intensities than under the additive noise. For the quantitative analysis of these stochastic phenomena we propose and apply an approach based on the stochastic sensitivity function technique and the method of confidence domains. In the case of a stable equilibrium, this confidence domain is an ellipse. For the stable limit cycle, this domain is a confidence band. The study of the mutual location of confidence bands and the boundary separating the basins of attraction for different noise intensities allows us to predict the emergence of noise-induced transitions. The effectiveness of this analytical approach is confirmed by the good agreement of theoretical estimations with results of direct numerical simulations.

In this paper we present Rayleigh formulas obtained from Kirchhoff integral formulas, which can later be used to obtain migration images. The relevance of the studies conducted in the work is due to the widespread use of migration in the interests of seismic oil and gas seismic exploration. A special feature of the work is the use of an elastic approximation to describe the dynamic behaviour of a geological environment, in contrast to the widespread acoustic approximation. The proposed approach will significantly improve the quality of seismic exploration in complex cases, such as permafrost and shelf zones of the southern and northern seas. The complexity of applying a system of equations describing the state of a linear-elastic medium to obtain Rayleigh formulas and algorithms based on them is a significant increase in the number of computations, the mathematical and analytical complexity of the resulting algorithms in comparison with the case of an acoustic medium. Therefore in industrial seismic surveys migration algorithms for the case of elastic waves are not currently used, which creates certain difficulties, since the acoustic approximation describes only longitudinal seismic waves in geological environments. This article presents the final analytical expressions that can be used to develop software systems using the description of elastic seismic waves: longitudinal and transverse, thereby covering the entire range of seismic waves: longitudinal reflected PP-waves, longitudinal reflected SP-waves, transverse reflected PS-waves and transverse reflected SS-waves. Also, the results of comparison of numerical solutions obtained on the basis of Rayleigh formulas with numerical solutions obtained by the grid-characteristic method are presented. The value of this comparison is due to the fact that the method based on Rayleigh integrals is based on analytical expressions, while the grid-characteristic method is a method of numerical integration of solutions based on a calculated grid. In the comparison, different types of sources were considered: a point source model widely used in marine and terrestrial seismic surveying and a flat wave model, which is also sometimes used in field studies.

The repressor is the first genetic regulatory network in synthetic biology, which was artificially constructed in 2000. It is a closed network of three genetic elements — $lacI$, $\lambda cI$ and $tetR$, — which have a natural origin, but are not found in nature in such a combination. The promoter of each of the three genes controls the next cistron via the negative feedback, suppressing the expression of the neighboring gene. In this paper, the nonlinear dynamics of a modified repressilator, which has time delays in all parts of the regulatory network, has been studied for the first time. Delay can be both natural, i.e. arises during the transcription/translation of genes due to the multistage nature of these processes, and artificial, i.e. specially to be introduced into the work of the regulatory network using synthetic biology technologies. It is assumed that the regulation is carried out by proteins being in a dimeric form. The considered repressilator has two more important modifications: the location on the same plasmid of the gene $gfp$, which codes for the fluorescent protein, and also the presence in the system of a DNA sponge. In the paper, the nonlinear dynamics has been considered within the framework of the deterministic description. By applying the method of decomposition into fast and slow motions, the set of nonlinear differential equations with delay on a slow manifold has been obtained. It is shown that there exists a single equilibrium state which loses its stability in an oscillatory manner at certain values of the control parameters. For a symmetric repressilator, in which all three genes are identical, an analytical solution for the neutral Andronov–Hopf bifurcation curve has been obtained. For the general case of an asymmetric repressilator, neutral curves are found numerically. It is shown that the asymmetric repressor generally is more stable, since the system is oriented to the behavior of the most stable element in the network. Nonlinear dynamic regimes arising in a repressilator with increase of the parameters are studied in detail. It was found that there exists a limit cycle corresponding to relaxation oscillations of protein concentrations. In addition to the limit cycle, we found the slow manifold not associated with above cycle. This is the long-lived transitional regime, which reflects the process of long-term synchronization of pulsations in the work of individual genes. The obtained results are compared with the experimental data known from the literature. The place of the model proposed in the present work among other theoretical models of the repressilator is discussed.

The review is based on some of the authors ’early works of particular scientific, methodological and practical interest and the greatest attention is paid to recent works, where quite detailed numerical studies of not only single, but also double and multiple explosions in a wide range of heights and environmental conditions have been performed . Since the shock wave of a powerful explosion is one of the main damaging factors in the lower atmosphere, the review focuses on both the physical analysis of their propagation and their interaction. Using the three-dimensional algorithms developed by the authors, the effects of interference and diffraction of several shock waves, which are interesting from a physical point of view, in the absence and presence of an underlying surface of various structures are considered. Quantitative characteristics are determined in the region of their maximum values, which is of known practical interest. For explosions in a dense atmosphere, some new analytical solutions based on the small perturbation method have been found that are convenient for approximate calculations. For a number of conditions, the possibility of using the self-similar properties of equations of the first and second kind to solve problems on the development of an explosion has been shown.

Based on numerical analysis, a fundamental change in the structure of the development of the perturbed region with a change in the height of the explosion in the range of 100–120 km is shown. At altitudes of more than 120 km, the geomagnetic field begins to influence the development of the explosion; therefore, even for a single explosion, the picture of the plasma flow after a few seconds becomes substantially three-dimensional. For the calculation of explosions at altitudes of 120–1000 km under the guidance of academician A. Kholodov. A special three-dimensional numerical algorithm based on the MHD approximation was developed. Numerous calculations were performed and for the first time a quite detailed picture of the three-dimensional flow of the explosion plasma was obtained with the formation of an upward jet in 5–10 s directed in the meridional plane approximately along the geomagnetic field. After some modification, this algorithm was used to calculate double explosions in the ionosphere, spaced a certain distance. The interaction between them was carried out both by plasma flows and through a geomagnetic field. Some results are given in this review and are described in detail in the original articles.