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Excitation patterns in the networks of inhibitory and excitatory neurons in the model of the neuroglial-vascular unit
Computer Research and Modeling, 2026, v. 18, no. 2, pp. 439-461Numerous contemporary studies confirm that neurons, astrocytes and blood vessels function as a unified dynamic system. Consequently, the concept of the integrated neurogliovascular unit (NGVU), encompassing these components, has emerged and gained significant traction in recent years. According to this framework, normal brain function relies on a broad complex of interactions between NGVU elements, while the disruption of these links may underlie various neuropathologies. Understanding the processes within a single NGVU, as well as the organization of connections between multiple units, is a prerequisite for successful diagnosis and therapy of neurological disorders.
In this work, we developed an NGVU model that, for the first time, integrates a detailed description of synaptically coupled excitatory and inhibitory neuronal networks (accounting for the E/I balance), extracellular environment dynamics (potassium, glutamate, GABA), and norepinephrine-modulated astrocytic activity, with subsequent regulation of local blood flow.
A key conceptual feature of the model is the integration of multiscale processes — ranging from ion dynamics at the level of individual Hodgkin – Huxley neurons to substance diffusion across a network of 100 NGVUs — into a single system of coupled nonlinear differential equations. This approach enabled the investigation of the ensemble’s collective dynamics and the identification of novel functional regimes.
Numerical experiments established that extracellular potassium dynamics and positive feedback play a decisive role in the formation of stable spatial excitation structures. It is shown that under local stimulation, activity remains confined due to potassium diffusion outflow; however, supercritical excitation initiates self-sustaining autowave regimes. The stabilization of these regimes leads to the formation of spatial patterns morphologically similar to Turing structures. These patterns, characterized by alternating zones of high and low activity, are independent of specific initial conditions but sensitive to parameter variations. This suggests that the system operates in a dynamic instability (chaos) regime, which is consistent with the concept of self-organized criticality of the brain under physiological conditions. The model successfully reproduces experimentally observed phenomena, including bursting and sensitivity to extracellular potassium. The results provide new perspectives for analyzing the pathophysiological mechanisms of brain function.
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Numerical simulation of sportsman's external flow
Computer Research and Modeling, 2017, v. 9, no. 2, pp. 331-344Views (last year): 29.Numerical simulation of moving sportsman external flow is presented. The unique method is developed for obtaining integral aerodynamic characteristics, which were the function of the flow regime (i.e. angle of attack, flow speed) and body position. Individual anthropometric characteristics and moving boundaries of sportsman (or sports equipment) during the race are taken into consideration.
Numerical simulation is realized using FlowVision CFD. The software is based on the finite volume method, high-performance numerical methods and reliable mathematical models of physical processes. A Cartesian computational grid is used by FlowVision, the grid generation is a completely automated process. Local grid adaptation is used for solving high-pressure gradient and object complex shape. Flow simulation process performed by solutions systems of equations describing movement of fluid and/or gas in the computational domain, including: mass, moment and energy conservation equations; state equations; turbulence model equations. FlowVision permits flow simulation near moving bodies by means of computational domain transformation according to the athlete shape changes in the motion. Ski jumper aerodynamic characteristics are studied during all phases: take-off performance in motion, in-run and flight. Projected investigation defined simulation method, which includes: inverted statement of sportsman external flow development (velocity of the motion is equal to air flow velocity, object is immobile); changes boundary of the body technology defining; multiple calculations with the national team member data projecting. The research results are identification of the main factors affected to jumping performance: aerodynamic forces, rotating moments etc. Developed method was tested with active sportsmen. Ski jumpers used this method during preparations for Sochi Olympic Games 2014. A comparison of the predicted characteristics and experimental data shows a good agreement. Method versatility is underlined by performing swimmer and skater flow simulation. Designed technology is applicable for sorts of natural and technical objects.
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Changepoint detection in biometric data: retrospective nonparametric segmentation methods based on dynamic programming and sliding windows
Computer Research and Modeling, 2024, v. 16, no. 5, pp. 1295-1321This paper is dedicated to the analysis of medical and biological data obtained through locomotor training and testing of astronauts conducted both on Earth and during spaceflight. These experiments can be described as the astronaut’s movement on a treadmill according to a predefined regimen in various speed modes. During these modes, not only the speed is recorded but also a range of parameters, including heart rate, ground reaction force, and others, are collected. In order to analyze the dynamics of the astronaut’s condition over an extended period, it is necessary to perform a qualitative segmentation of their movement modes to independently assess the target metrics. This task becomes particularly relevant in the development of an autonomous life support system for astronauts that operates without direct supervision from Earth. The segmentation of target data is complicated by the presence of various anomalies, such as deviations from the predefined regimen, arbitrary and varying duration of mode transitions, hardware failures, and other factors. The paper includes a detailed review of several contemporary retrospective (offline) nonparametric methods for detecting multiple changepoints, which refer to sudden changes in the properties of the observed time series occurring at unknown moments. Special attention is given to algorithms and statistical measures that determine the homogeneity of the data and methods for detecting change points. The paper considers approaches based on dynamic programming and sliding window methods. The second part of the paper focuses on the numerical modeling of these methods using characteristic examples of experimental data, including both “simple” and “complex” speed profiles of movement. The analysis conducted allowed us to identify the preferred methods, which will be further evaluated on the complete dataset. Preference is given to methods that ensure the closeness of the markup to a reference one, potentially allow the detection of both boundaries of transient processes, as well as are robust relative to internal parameters.
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Mathematical modeling of phase transitions during collective interaction of agents in a common thermal field
Computer Research and Modeling, 2025, v. 17, no. 5, pp. 1005-1028Collective behavior can serve as a mechanism of thermoregulation and play a key role in the joint survival of a group of organisms. In higher animals, such phenomena are usually the subject of study of biology since sudden transitions to collective behavior are difficult to differentiate from the psychological and social adaptation of animals. However, in this paper, we indicate several important examples when a flock of higher animals demonstrates phase transitions similar to known phenomena in liquids and gases. This issue can also be studied experimentally within the framework of synthetic systems consisting of self-propelled robots that act according to a certain given algorithm. Generalizing both of these cases, we consider the problem of phase transitions in a dense group of interacting selfpropelled agents. Within the framework of microscopic theory, we propose a mathematical model of the phenomenon, in which agents are represented as bodies interacting with each other in accordance with an effective potential of a special type, expressing the desire of agents to move in the direction of the gradient of the joint thermal field. We show that the number of agents in the group, the group power, is the control parameter of the problem. A discrete model with individual dynamics of agents reproduces most of the phenomena observed both in natural flocks of higher animals engaged in collective thermoregulation and in synthetic complex systems. A first-order phase transition is observed, which symbolizes a change in the aggregate state in a group of agents. One observes the self-assembly of the initial weakly structured mass of agents into dense quasi-crystalline structures. We demonstrate also that, with an increase in the group power, a second-order phase transition in the form of thermal convection can occur. It manifests in a sudden liquefaction of the group and a transition to vortex motion, which ensures more efficient energy consumption in the case of a synthetic system of interacting robots and the collective survival of all individuals in the case of natural animal flocks.With an increase in the group power, secondary bifurcations occur, the vortex structure in agent medium becomes more complicated.
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On the using the differential schemes to transport equation with drain in grid modeling
Computer Research and Modeling, 2020, v. 12, no. 5, pp. 1149-1164Modern power transportation systems are the complex engineering systems. Such systems include both point facilities (power producers, consumers, transformer substations, etc.) and the distributed elements (f.e. power lines). Such structures are presented in the form of the graphs with different types of nodes under creating the mathematical models. It is necessary to solve the system of partial differential equations of the hyperbolic type to study the dynamic effects in such systems.
An approach similar to one already applied in modeling similar problems earlier used in the work. New variant of the splitting method was used proposed by the authors. Unlike most known works, the splitting is not carried out according to physical processes (energy transport without dissipation, separately dissipative processes). We used splitting to the transport equations with the drain and the exchange between Reimann’s invariants. This splitting makes possible to construct the hybrid schemes for Riemann invariants with a high order of approximation and minimal dissipation error. An example of constructing such a hybrid differential scheme is described for a single-phase power line. The difference scheme proposed is based on the analysis of the properties of the schemes in the space of insufficient coefficients.
Examples of the model problem numerical solutions using the proposed splitting and the difference scheme are given. The results of the numerical calculations shows that the difference scheme allows to reproduce the arising regions of large gradients. It is shown that the difference schemes also allow detecting resonances in such the systems.
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Models of soil organic matter dynamics: problems and perspectives
Computer Research and Modeling, 2016, v. 8, no. 2, pp. 391-399Soil as a complex multifunctional open system is one of the most difficult object for modeling. In spite of serious achievements in the soil system modeling, existed models do not reflect all aspects and processes of soil organic matter mineralization and humification. The problems and “hot spots” in the modeling of the dynamics of soil organic matter and biophylous elements were identified on a base of creation and wide implementation of ROMUL and EFIMOD models. The following aspects are discussed: further theoretical background; improving the structure of models; preparation and uncertainty of the initial data; inclusion of all soil biota (microorganisms, micro- and meso-fauna) as factors of humification; impact of soil mineralogy on C and N dynamics; hydro-thermal regime and organic matter distribution in whole soil profile; vertical and horizontal migration of soil organic matter. An effective feedback from modellers to experimentalists is necessary to solve the listed problems.
Keywords: mathematic model, soil organic matter.Views (last year): 2. Citations: 3 (RSCI). -
Reduced mathematical model of blood coagulation taking into account thrombin activity switching as a basis for estimation of hemodynamic effects and its implementation in FlowVision package
Computer Research and Modeling, 2023, v. 15, no. 4, pp. 1039-1067The possibility of numerical 3D simulation of thrombi formation is considered.
The developed up to now detailed mathematical models describing formation of thrombi and clots include a great number of equations. Being implemented in a CFD code, the detailed mathematical models require essential computer resources for simulation of the thrombi growth in a blood flow. A reasonable alternative way is using reduced mathematical models. Two models based on the reduced mathematical model for the thrombin generation are described in the given paper.
The first model describes growth of a thrombus in a great vessel (artery). The artery flows are essentially unsteady. They are characterized by pulse waves. The blood velocity here is high compared to that in the vein tree. The reduced model for the thrombin generation and the thrombus growth in an artery is relatively simple. The processes accompanying the thrombin generation in arteries are well described by the zero-order approximation.
A vein flow is characterized lower velocity value, lower gradients, and lower shear stresses. In order to simulate the thrombin generation in veins, a more complex system of equations has to be solved. The model must allow for all the non-linear terms in the right-hand sides of the equations.
The simulation is carried out in the industrial software FlowVision.
The performed numerical investigations have shown the suitability of the reduced models for simulation of thrombin generation and thrombus growth. The calculations demonstrate formation of the recirculation zone behind a thrombus. The concentration of thrombin and the mass fraction of activated platelets are maximum here. Formation of such a zone causes slow growth of the thrombus downstream. At the upwind part of the thrombus, the concentration of activated platelets is low, and the upstream thrombus growth is negligible.
When the blood flow variation during a hart cycle is taken into account, the thrombus growth proceeds substantially slower compared to the results obtained under the assumption of constant (averaged over a hard cycle) conditions. Thrombin and activated platelets produced during diastole are quickly carried away by the blood flow during systole. Account of non-Newtonian rheology of blood noticeably affects the results.
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Using extended ODE systems to investigate the mathematical model of the blood coagulation
Computer Research and Modeling, 2022, v. 14, no. 4, pp. 931-951Many properties of ordinary differential equations systems solutions are determined by the properties of the equations in variations. An ODE system, which includes both the original nonlinear system and the equations in variations, will be called an extended system further. When studying the properties of the Cauchy problem for the systems of ordinary differential equations, the transition to extended systems allows one to study many subtle properties of solutions. For example, the transition to the extended system allows one to increase the order of approximation for numerical methods, gives the approaches to constructing a sensitivity function without using numerical differentiation procedures, allows to use methods of increased convergence order for the inverse problem solution. Authors used the Broyden method belonging to the class of quasi-Newtonian methods. The Rosenbroke method with complex coefficients was used to solve the stiff systems of the ordinary differential equations. In our case, it is equivalent to the second order approximation method for the extended system.
As an example of the proposed approach, several related mathematical models of the blood coagulation process were considered. Based on the analysis of the numerical calculations results, the conclusion was drawn that it is necessary to include a description of the factor XI positive feedback loop in the model equations system. Estimates of some reaction constants based on the numerical inverse problem solution were given.
Effect of factor V release on platelet activation was considered. The modification of the mathematical model allowed to achieve quantitative correspondence in the dynamics of the thrombin production with experimental data for an artificial system. Based on the sensitivity analysis, the hypothesis tested that there is no influence of the lipid membrane composition (the number of sites for various factors of the clotting system, except for thrombin sites) on the dynamics of the process.
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Visualization of work of a distributed application based on the mqcloud library
Computer Research and Modeling, 2015, v. 7, no. 3, pp. 529-532Citations: 1 (RSCI).Independent components communicating with each other due to complex control make the work of complex distributed computer systems poorly scalable within the framework of the existing communication middleware. Two major problems of such systems' scaling can be defined: overloading of unequal nodes due to proportional redistribution of workload and difficulties in the realization of continuous communication between several nodes of the system. This paper is focused on the developed solution enabling visualization of the work of such a dynamical system.
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