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Difference splitting schemes for the system of one-dimensional equations of hemodynamics
Computer Research and Modeling, 2024, v. 16, no. 2, pp. 459-488The work is devoted to the construction and analysis of difference schemes for a system of hemodynamic equations obtained by averaging the hydrodynamic equations of a viscous incompressible fluid over the vessel cross-section. Models of blood as an ideal and as a viscous Newtonian fluid are considered. Difference schemes that approximate equations with second order on the spatial variable are proposed. The computational algorithms of the constructed schemes are based on the method of splitting on physical processes. According to this approach, at one time step, the model equations are considered separately and sequentially. The practical implementation of the proposed schemes at each time step leads to a sequential solution of two linear systems with tridiagonal matrices. It is demonstrated that the schemes are $\rho$-stable under minor restrictions on the time step in the case of sufficiently smooth solutions.
For the problem with a known analytical solution, it is demonstrated that the numerical solution has a second order convergence in a wide range of spatial grid step. The proposed schemes are compared with well-known explicit schemes, such as the Lax – Wendroff, Lax – Friedrichs and McCormack schemes in computational experiments on modeling blood flow in model vascular systems. It is demonstrated that the results obtained using the proposed schemes are close to the results obtained using other computational schemes, including schemes constructed by other approaches to spatial discretization. It is demonstrated that in the case of different spatial grids, the time of computation for the proposed schemes is significantly less than in the case of explicit schemes, despite the need to solve systems of linear equations at each step. The disadvantages of the schemes are the limitation on the time step in the case of discontinuous or strongly changing solutions and the need to use extrapolation of values at the boundary points of the vessels. In this regard, problems on the adaptation of splitting schemes for problems with discontinuous solutions and in cases of special types of conditions at the vessels ends are perspective for further research.
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Random forest of risk factors as a predictive tool for adverse events in clinical medicine
Computer Research and Modeling, 2025, v. 17, no. 5, pp. 987-1004The aim of study was to develop an ensemble machine learning method for constructing interpretable predictive models and to validate it using the example of predicting in-hospital mortality (IHM) in patients with ST-segment elevation myocardial infarction (STEMI).
A retrospective cohort study was conducted using data from 5446 electronic medical records of STEMI patients who underwent percutaneous coronary intervention (PCI). Patients were divided into two groups: 335 (6.2%) patients who died during hospitalization and 5111 (93.8%) patients with a favourable in-hospital outcome. A pool of potential predictors was formed using statistical methods. Through multimetric categorization (minimizing p-values, maximizing the area under the ROC curve (AUC), and SHAP value analysis), decision trees, and multivariable logistic regression (MLR), predictors were transformed into risk factors for IHM. Predictive models for IHM were developed using MLR, Random Forest Risk Factors (RandFRF), Stochastic Gradient Boosting (XGboost), Random Forest (RF), Adaptive boosting, Gradient Boosting, Light Gradient-Boosting Machine, Categorical Boosting (CatBoost), Explainable Boosting Machine and Stacking methods.
Authors developed the RandFRF method, which integrates the predictive outcomes of modified decision trees, identifies risk factors and ranks them based on their contribution to the risk of adverse outcomes. RandFRF enables the development of predictive models with high discriminative performance (AUC 0.908), comparable to models based on CatBoost and Stacking (AUC 0.904 and 0.908, respectively). In turn, risk factors provide clinicians with information on the patient’s risk group classification and the extent of their impact on the probability of IHM. The risk factors identified by RandFRF can serve not only as rationale for the prediction results but also as a basis for developing more accurate models.
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Motion control of a rigid body in viscous fluid
Computer Research and Modeling, 2013, v. 5, no. 4, pp. 659-675Views (last year): 2. Citations: 1 (RSCI).We consider the optimal motion control problem for a mobile device with an external rigid shell moving along a prescribed trajectory in a viscous fluid. The mobile robot under consideration possesses the property of self-locomotion. Self-locomotion is implemented due to back-and-forth motion of an internal material point. The optimal motion control is based on the Sugeno fuzzy inference system. An approach based on constructing decision trees using the genetic algorithm for structural and parametric synthesis has been proposed to obtain the base of fuzzy rules.
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Comparing the effectiveness of computer mass appraisal methods
Computer Research and Modeling, 2015, v. 7, no. 1, pp. 185-196Views (last year): 2.Location-based models — one of areas of CAMA (computer-assisted mass apriasal) building. When taking into account the location of the object using spatial autoregressive models structure of models (type of spatial autocorrelation, choice of “nearest neighbors”) cannot always be determined before its construction. Moreover, in practice there are situations where more efficient methods are taking into account different rates depending on the type of the object from its location. In this regard there are important issues in spatial methods area:
– fields of methods efficacy;
– sensitivity of the methods on the choice of the type of spatial model and on the selected number of nearest neighbors.
This article presents a methodology for assessing the effectiveness of computer evaluation of real estate objects. There are results of approbation on methods based on location information of the objects.
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Problems of numerical simulation in the dynamics system “soil–plant”
Computer Research and Modeling, 2020, v. 12, no. 2, pp. 445-465Modern mathematical models in the dynamics system “soil–plant” are considered. The components of this system are: agricultural plant, microorganisms of the rhizosphere (root zone of plants), the mineral nutrition elements of plants in their mobile and immobile forms. The model of submitted system based on the analysis of the adopted provisions was developed. The construction of system elements allows to display the coordinated dynamics of these elements among themselves. In particular, the dynamics of mineral nutrition elements in plants and the dynamics of their biomass are determined by the current contents in the rhizosphere of mineral fertilizers and organic origin substances (plant roots, leaves, etc.). The immobility of plants spatial distribution and the mobile spatial nature of microorganisms are assumed. This mechanism is determined by diffusion. Mutual relationships between weeds and pests are suggested. The dynamics of the mineral nutrition elements is determined by the peculiarity of sorption in the soil solution, environmental conditions, organic decomposition and fertilizer application. An analytical study for a system where each of the components is represented by only one species (fertilizer, the association of microorganisms and plants) was performed. An adaptation of the wave propagation model in the “resource–consumer” system (Kolmogorov–Petrovsky–Piskunov waves) has been developed for annual agricultural crops. The developed model has been adapted for the growth of Krasnoufimskaya-100 spring wheat in a vessel on peat lowland soil, where nitrogen, phosphorus, and potassium fertilizers were added variably. Sample distributions are plants biomass and the content of mineral nutrition elements in them. The parametric identification of the model and its adequacy was performed. An assessment of the model adequacy showed a good agreement between the model and experimental data.
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Modeling the kinetics of radiopharmaceuticals with iodine isotopes in nuclear medicine problems
Computer Research and Modeling, 2020, v. 12, no. 4, pp. 883-905Radiopharmaceuticals with iodine radioisotopes are now widely used in imaging and non-imaging methods of nuclear medicine. When evaluating the results of radionuclide studies of the structural and functional state of organs and tissues, parallel modeling of the kinetics of radiopharmaceuticals in the body plays an important role. The complexity of such modeling lies in two opposite aspects. On the one hand, excessive simplification of the anatomical and physiological characteristics of the organism when splitting it to the compartments that may result in the loss or distortion of important clinical diagnosis information, on the other – excessive, taking into account all possible interdependencies of the functioning of the organs and systems that, on the contrary, will lead to excess amount of absolutely useless for clinical interpretation of the data or the mathematical model becomes even more intractable. Our work develops a unified approach to the construction of mathematical models of the kinetics of radiopharmaceuticals with iodine isotopes in the human body during diagnostic and therapeutic procedures of nuclear medicine. Based on this approach, three- and four-compartment pharmacokinetic models were developed and corresponding calculation programs were created in the C++ programming language for processing and evaluating the results of radionuclide diagnostics and therapy. Various methods for identifying model parameters based on quantitative data from radionuclide studies of the functional state of vital organs are proposed. The results of pharmacokinetic modeling for radionuclide diagnostics of the liver, kidney, and thyroid using iodine-containing radiopharmaceuticals are presented and analyzed. Using clinical and diagnostic data, individual pharmacokinetic parameters of transport of different radiopharmaceuticals in the body (transport constants, half-life periods, maximum activity in the organ and the time of its achievement) were determined. It is shown that the pharmacokinetic characteristics for each patient are strictly individual and cannot be described by averaged kinetic parameters. Within the framework of three pharmacokinetic models, “Activity–time” relationships were obtained and analyzed for different organs and tissues, including for tissues in which the activity of a radiopharmaceutical is impossible or difficult to measure by clinical methods. Also discussed are the features and the results of simulation and dosimetric planning of radioiodine therapy of the thyroid gland. It is shown that the values of absorbed radiation doses are very sensitive to the kinetic parameters of the compartment model. Therefore, special attention should be paid to obtaining accurate quantitative data from ultrasound and thyroid radiometry and identifying simulation parameters based on them. The work is based on the principles and methods of pharmacokinetics. For the numerical solution of systems of differential equations of the pharmacokinetic models we used Runge–Kutta methods and Rosenbrock method. The Hooke–Jeeves method was used to find the minimum of a function of several variables when identifying modeling parameters.
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Bibliographic link prediction using contrast resampling technique
Computer Research and Modeling, 2021, v. 13, no. 6, pp. 1317-1336The paper studies the problem of searching for fragments with missing bibliographic links in a scientific article using automatic binary classification. To train the model, we propose a new contrast resampling technique, the innovation of which is the consideration of the context of the link, taking into account the boundaries of the fragment, which mostly affects the probability of presence of a bibliographic links in it. The training set was formed of automatically labeled samples that are fragments of three sentences with class labels «without link» and «with link» that satisfy the requirement of contrast: samples of different classes are distanced in the source text. The feature space was built automatically based on the term occurrence statistics and was expanded by constructing additional features — entities (names, numbers, quotes and abbreviations) recognized in the text.
A series of experiments was carried out on the archives of the scientific journals «Law enforcement review» (273 articles) and «Journal Infectology» (684 articles). The classification was carried out by the models Nearest Neighbors, RBF SVM, Random Forest, Multilayer Perceptron, with the selection of optimal hyperparameters for each classifier.
Experiments have confirmed the hypothesis put forward. The highest accuracy was reached by the neural network classifier (95%), which is however not as fast as the linear one that showed also high accuracy with contrast resampling (91–94%). These values are superior to those reported for NER and Sentiment Analysis on comparable data. The high computational efficiency of the proposed method makes it possible to integrate it into applied systems and to process documents online.
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Multi regime model and numerical algorithm for calculations on various types quasi crack developing under cyclic loading
Computer Research and Modeling, 2022, v. 14, no. 4, pp. 873-885A new method for calculating the initiation and development of narrow local damage zones in specimens and structural elements subjected to various modes cyclic loadings is proposed based on multi regime two criteria model of fatigue fracture. Such narrow zones of damage can be considered as quasi-cracks of two different types, corresponding to the mechanism of normal crack opening and shear.
Numerical simulations that are aimed to reproduce the left and right branches of the full fatigue curves for specimens made from titanium and aluminum alloy and to verify the model. These branches were constructed based on tests results obtained under various modes and cyclic loading schemes. Examples of modeling the development of quasi-cracks for two types (normal opening and shear) under different cyclic loading modes for a plate with a hole as a stress concentrator are given. Under a complex stress state in the proposed multi regime model, a natural implementation of any considered mechanisms for the quasi-cracks development is possible. Quasi-cracks of different types can develop in different parts of the specimen, including simultaneously.
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Development of and research on machine learning algorithms for solving the classification problem in Twitter publications
Computer Research and Modeling, 2023, v. 15, no. 1, pp. 185-195Posts on social networks can both predict the movement of the financial market, and in some cases even determine its direction. The analysis of posts on Twitter contributes to the prediction of cryptocurrency prices. The specificity of the community is represented in a special vocabulary. Thus, slang expressions and abbreviations are used in posts, the presence of which makes it difficult to vectorize text data, as a result of which preprocessing methods such as Stanza lemmatization and the use of regular expressions are considered. This paper describes created simplest machine learning models, which may work despite such problems as lack of data and short prediction timeframe. A word is considered as an element of a binary vector of a data unit in the course of the problem of binary classification solving. Basic words are determined according to the frequency analysis of mentions of a word. The markup is based on Binance candlesticks with variable parameters for a more accurate description of the trend of price changes. The paper introduces metrics that reflect the distribution of words depending on their belonging to a positive or negative classes. To solve the classification problem, we used a dense model with parameters selected by Keras Tuner, logistic regression, a random forest classifier, a naive Bayesian classifier capable of working with a small sample, which is very important for our task, and the k-nearest neighbors method. The constructed models were compared based on the accuracy metric of the predicted labels. During the investigation we recognized that the best approach is to use models which predict price movements of a single coin. Our model deals with posts that mention LUNA project, which no longer exist. This approach to solving binary classification of text data is widely used to predict the price of an asset, the trend of its movement, which is often used in automated trading.
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Investigation of shear-induced platelet activation in arteriovenous fistulas for haemodialysis
Computer Research and Modeling, 2023, v. 15, no. 3, pp. 703-721Numerical modeling of shear-induced platelet activation in haemodialysis arteriovenous fistulas was carried out in this work. The goal was to investigate the mechanisms of threshold shear-induced platelet activation in fistulas. For shear-induced platelet activation to take place, shear stress accumulated by platelets along corresponding trajectories in blood flow had to exceed a definite threshold value. The threshold value of cumulative shear stress was supposed to depend on the multimer size of von Willebrand factor macromolecules acting as hydrodynamic sensors for platelets. The effect of arteriovenous fistulas parameters, such as the anastomotic angle, blood flow rate, and the multimer size of von Willebrand factor macromolecules, on platelet activation risk was studied. Parametric diagrams have been constructed that make it possible to distinguish the areas of parameters corresponding to the presence or absence of shear-induced platelet activation. Scaling relations that approximate critical curves on parametric diagrams were obtained. Analysis showed that threshold fistula flow rate is higher for obtuse anastomotic angle than for sharp ones. This means that a fistula with obtuse angle can be used in wider flow rate range without risk of platelet activation. In addition, a study of different anastomosis configurations of arteriovenous fistulas showed that the configuration “end of vein to end of artery” is among the safest. For all the investigated anastomosis configurations, the critical curves on the parametric diagrams were monotonically decreasing functions of von Willebrand factor multimer size. It was shown that fistula flow rate should have a significant impact on the probability of thrombus formation initiation, while the direction of flow through the distal artery did not affect platelet activation. The obtained results allowed to determine the safest fistula configurations with respect to thrombus formation triggering. The authors believe that the results of the work may be of interest to doctors performing surgical operations for creation of arteriovenous fistulas for haemodialysis. In the final section of the work, possible clinical applications of the obtained results by means of mathematical modeling are discussed.
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