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Optimization of the brain command dictionary based on the statistical proximity criterion in silent speech recognition task
Computer Research and Modeling, 2023, v. 15, no. 3, pp. 675-690In our research, we focus on the problem of classification for silent speech recognition to develop a brain– computer interface (BCI) based on electroencephalographic (EEG) data, which will be capable of assisting people with mental and physical disabilities and expanding human capabilities in everyday life. Our previous research has shown that the silent pronouncing of some words results in almost identical distributions of electroencephalographic signal data. Such a phenomenon has a suppressive impact on the quality of neural network model behavior. This paper proposes a data processing technique that distinguishes between statistically remote and inseparable classes in the dataset. Applying the proposed approach helps us reach the goal of maximizing the semantic load of the dictionary used in BCI.
Furthermore, we propose the existence of a statistical predictive criterion for the accuracy of binary classification of the words in a dictionary. Such a criterion aims to estimate the lower and the upper bounds of classifiers’ behavior only by measuring quantitative statistical properties of the data (in particular, using the Kolmogorov – Smirnov method). We show that higher levels of classification accuracy can be achieved by means of applying the proposed predictive criterion, making it possible to form an optimized dictionary in terms of semantic load for the EEG-based BCIs. Furthermore, using such a dictionary as a training dataset for classification problems grants the statistical remoteness of the classes by taking into account the semantic and phonetic properties of the corresponding words and improves the classification behavior of silent speech recognition models.
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Utilizing multi-source real data for traffic flow optimization in CTraf
Computer Research and Modeling, 2024, v. 16, no. 1, pp. 147-159The problem of optimal control of traffic flow in an urban road network is considered. The control is carried out by varying the duration of the working phases of traffic lights at controlled intersections. A description of the control system developed is given. The control system enables the use of three types of control: open-loop, feedback and manual. In feedback control, road infrastructure detectors, video cameras, inductive loop and radar detectors are used to determine the quantitative characteristics of current traffic flow state. The quantitative characteristics of the traffic flows are fed into a mathematical model of the traffic flow, implemented in the computer environment of an automatic traffic flow control system, in order to determine the moments for switching the working phases of the traffic lights. The model is a system of finite-difference recurrent equations and describes the change in traffic flow on each road section at each time step, based on retrived data on traffic flow characteristics in the network, capacity of maneuvers and flow distribution through alternative maneuvers at intersections. The model has scaling and aggregation properties. The structure of the model depends on the structure of the graph of the controlled road network. The number of nodes in the graph is equal to the number of road sections in the considered network. The simulation of traffic flow changes in real time makes it possible to optimally determine the duration of traffic light operating phases and to provide traffic flow control with feedback based on its current state. The system of automatic collection and processing of input data for the model is presented. In order to model the states of traffic flow in the network and to solve the problem of optimal traffic flow control, the CTraf software package has been developed, a brief description of which is given in the paper. An example of the solution of the optimal control problem of traffic flows on the basis of real data in the road network of Moscow is given.
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Analysis of the rate of electron transport through photosynthetic cytochrome $b_6 f$ complex
Computer Research and Modeling, 2024, v. 16, no. 4, pp. 997-1022We consider an approach based on linear algebra methods to analyze the rate of electron transport through the cytochrome $b_6 f$ complex. In the proposed approach, the dependence of the quasi-stationary electron flux through the complex on the degree of reduction of pools of mobile electron carriers is considered a response function characterizing this process. We have developed software in the Python programming language that allows us to construct the master equation for the complex according to the scheme of elementary reactions and calculate quasi-stationary electron transport rates through the complex and the dynamics of their changes during the transition process. The calculations are performed in multithreaded mode, which makes it possible to efficiently use the resources of modern computing systems and to obtain data on the functioning of the complex in a wide range of parameters in a relatively short time. The proposed approach can be easily adapted for the analysis of electron transport in other components of the photosynthetic and respiratory electron-transport chain, as well as other processes in multienzyme complexes containing several reaction centers. Cryo-electron microscopy and redox titration data were used to parameterize the model of cytochrome $b_6 f$ complex. We obtained dependences of the quasi-stationary rate of plastocyanin reduction and plastoquinone oxidation on the degree of reduction of pools of mobile electron carriers and analyzed the dynamics of rate changes in response to changes in the redox state of the plastoquinone pool. The modeling results are in good agreement with the available experimental data.
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Reinforcement learning-based adaptive traffic signal control invariant to traffic signal configuration
Computer Research and Modeling, 2024, v. 16, no. 5, pp. 1253-1269In this paper, we propose an adaptive traffic signal control method invariant to the configuration of the traffic signal. The proposed method uses one neural network model to control traffic signals of various configurations, differing both in the number of controlled lanes and in the used traffic light control cycle (set of phases). To describe the state space, both dynamic information about the current state of the traffic flow and static data about the configuration of a controlled intersection are used. To increase the speed of model training and reduce the required amount of data required for model convergence, it is proposed to use an “expert” who provides additional data for model training. As an expert, we propose to use an adaptive control method based on maximizing the weighted flow of vehicles through an intersection. Experimental studies of the effectiveness of the developed method were carried out in a microscopic simulation software package. The obtained results confirmed the effectiveness of the proposed method in different simulation scenarios. The possibility of using the developed method in a simulation scenario that is not used in the training process was shown. We provide a comparison of the proposed method with other baseline solutions, including the method used as an “expert”. In most scenarios, the developed method showed the best results by average travel time and average waiting time criteria. The advantage over the method used as an expert, depending on the scenario under study, ranged from 2% to 12% according to the criterion of average vehicle waiting time and from 1% to 7% according to the criterion of average travel time.
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Model study of gas exchange processes in phytoplankton under the influence of photosynthetic processes and metabolism
Computer Research and Modeling, 2025, v. 17, no. 5, pp. 963-985The dynamics of various gaseous substances is of great importance in the vital activity of phytoplankton. The dynamics of oxygen and carbon dioxide are the most indicative for aquatic plant communities. These dynamics are important for the global ratio of oxygen and carbon dioxide in the Earth’s atmosphere. The goal of the work is to use the mathematical modeling to study the role of oxygen and carbon dioxide in the life of aquatic plant organisms, in particular, the phytoplankton. The series of mathematical models of the dynamics of oxygen and carbon dioxide in the phytoplankton body are proposed. The series of models are built according to the increasing degree of complexity and the number of modeled processes. At first, the simplest model of only gas dynamics is considered, then there is a transition to models with the interaction and mutual influence of gases on the formation and dynamics of energy-intensive substances and on growth processes in the plant organism. Photosynthesis and respiration are considered as the basis of the models. The models study the properties of solutions: equilibrium solutions and their stability, dynamic properties of solutions. Various types of equilibrium stability, possible complex non-linear dynamics have been identified. These properties allow better orientation when choosing a model to describe processes with a known set of data and formulated modeling goals. An example of comparing an experiment with its model description is given. The next goal of modeling — to link gas dynamics for oxygen and carbon dioxide with metabolic processes in plant organisms. In the future, model designs will be applied to the analysis of ecosystem behavior when the habitat changes, including the content of gaseous substances.
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Computer modeling of the gross regional product dynamics: a comparative analysis of neural network models
Computer Research and Modeling, 2025, v. 17, no. 6, pp. 1219-1236Analysis of regional economic indicators plays a crucial role in management and development planning, with Gross Regional Product (GRP) serving as one of the key indicators of economic activity. The application of artificial intelligence, including neural network technologies, enables significant improvements in the accuracy and reliability of forecasts of economic processes. This study compares three neural network algorithm models for predicting the GRP of a typical region of the Russian Federation — the Udmurt Republic — based on time series data from 2000 to 2023. The selected models include a neural network with the Bat Algorithm (BA-LSTM), a neural network model based on backpropagation error optimized with a Genetic Algorithm (GA-BPNN), and a neural network model of Elman optimized using the Particle Swarm Optimization algorithm (PSO-Elman). The research involved stages of neural network modeling such as data preprocessing, training model, and comparative analysis based on accuracy and forecast quality metrics. This approach allows for evaluating the advantages and limitations of each model in the context of GRP forecasting, as well as identifying the most promising directions for further research. The utilization of modern neural network methods opens new opportunities for automating regional economic analysis and improving the quality of forecast assessments, which is especially relevant when data are limited and for rapid decision-making. The study uses factors such as the amount of production capital, the average annual number of labor resources, the share of high-tech and knowledge-intensive industries in GRP, and an inflation indicator as input data for predicting GRP. The high accuracy of the predictions achieved by including these factors in the neural network models confirms the strong correlation between these factors and GRP. The results demonstrate the exceptional accuracy of the BA-LSTM neural network model on validation data: the coefficient of determination was 0.82, and the mean absolute percentage error was 4.19%. The high performance and reliability of this model confirm its capacity to predict effectively the dynamics of the GRP. During the forecast period up to 2030, the Udmurt Republic is expected to experience an annual increase in Gross Regional Product (GRP) of +4.6% in current prices or +2.5% in comparable 2023 prices. By 2030, the GRP is projected to reach 1264.5 billion rubles.
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Reducing computational complexity in agent-based epidemiological model calibration: application of deep learning surrogates
Computer Research and Modeling, 2026, v. 18, no. 1, pp. 185-200Acute respiratory infections are a major public health concern because they are the leading cause of illness and death in many countries. Therefore, there is great interest in developing models and methods capable of modeling the spread of these infections within communities, with the aim of controlling outbreaks and preventing their spread. Agent-based models (ABM) are one of the most important tools in epidemiological research for modeling epidemic dynamics in realistic populations, but they face significant challenges in terms of computational complexity in their operation and calibration of epidemiological data, as parameter estimation typically requires repeated simulations across large parameter spaces to determine plausible values for key epidemiological parameters. This paper addresses the problem of alleviating computational constraints in the inverse problem of calibrating an ABM model for simulating the spread of respiratory infections in Saint Petersburg. The paper proposes the application of machine learning surrogate to link epidemic trajectories to underlying epidemiological parameters, enabling them to quickly infer parameter estimates from observed epidemic data. This is done by formulating the task of calibrating ABMs against epidemiological data as a supervised learning problem, where sequences extracted from epidemiological trajectories are associated with underlying epidemiological parameters. The research was based on evaluating the performance of attention-based sequence modeling, probabilistic deep learning, and distributional regression for inferring parameter estimates from truncated sequences of epidemic trajectories. Experimental evaluations have demonstrated the effectiveness of this approach and its practical and straightforward application. The results also indicated the superiority of attention-based sequence modeling, as it showed more consistent performance across metrics and horizons in accurate parameter estimation and credible uncertainty quantification. Distributional regression modeling also showed good performance with specific strengths in point accuracy while probabilistic deep learning performed poorly, especially at longer input horizons.
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Synchronization of circadian rhythms in the scale of a gene, a cell and a whole organism
Computer Research and Modeling, 2013, v. 5, no. 2, pp. 255-270Views (last year): 1. Citations: 8 (RSCI).In the paper three characteristic scales of a biological system are proposed: microscopic (gene's size), mesoscopic (cell’s size) and macroscopic level (organism’s size). For each case the approach to modeling of circadian rhythms is discussed on the base of a time-delay model. At gene’s scale the stochastic description has been used. The robustness of rhythms mechanism to the fluctuations has been demonstrated. At the mesoscopic scale we propose the deterministic description within the spatially extended model. It was found the effect of collective synchronization of rhythms in cells. Macroscopic effects have been studied within the discrete model describing the collective behaviour of large amount of cells. The problem of cross-linking of results obtained at different scales is discussed. The comparison with experimental data is given.
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Modeling of behavior of panicked crowd in multi-floor branched space
Computer Research and Modeling, 2013, v. 5, no. 3, pp. 491-508Views (last year): 7. Citations: 10 (RSCI).The collective behavior of crowd leaving a room is modeled. The model is based on molecular dynamics approach with a mixture of socio-psychological and physical forces. The new algorithm for complicatedly branched space is proposed. It suggests that each individual develops its own plan of escape, which is stochastically transformed during the evolution. The algorithm includes also the separation of original space into rooms with possible exits selected by individuals according to their probability distribution. The model is calibrated on the base of empirical data provided by fire case in the nightclub “Lame Horse” (Perm, 2009). The algorithm is realized as an end-user Java software. It is assumed that this tool could help to test the buildings for their safety for humans.
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Methodic of legacy information systems handling
Computer Research and Modeling, 2014, v. 6, no. 2, pp. 331-344Views (last year): 3. Citations: 1 (RSCI).In this article a method of legacy information systems handling is offered. During professional activities of specialists of various domains of industry they face with the problem that computer software that was involved in product development stage becomes obsolete much quickly than the product itself. At the same time switch to any modern software might be not possible due to various reasons. This problem is known as "legacy system" problem. It appears when product lifecycle is sufficiently longer than that of software systems that were used for product creation. In this article author offers an approach for solving this problem along with computer application based on this approach.
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