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This work is devoted to the analysis of conformational changes in tubulin dimers and tetramers, in particular, the assessment of the bending of microtubule protofilaments. Three recently exploited approaches for estimating the bend of tubulin protofilaments are reviewed: (1) measurement of the angle between the vector passing through the H7 helices in $\alpha$ and $\beta$ tubulin monomers in the straight structure and the same vector in the curved structure of tubulin; (2) measurement of the angle between the vector, connecting the centers of mass of the subunit and the associated GTP nucleotide, and the vector, connecting the centers of mass of the same nucleotide and the adjacent tubulin subunit; (3) measurement of the three rotation angles of the bent tubulin subunit relative to the straight subunit. Quantitative estimates of the angles calculated at the intra- and inter-dimer interfaces of tubulin in published crystal structures, calculated in accordance with the three metrics, are presented. Intra-dimer angles of tubulin in one structure, measured by the method (3), as well as measurements by this method of the intra-dimer angles in different structures, were more similar, which indicates a lower sensitivity of the method to local changes in tubulin conformation and characterizes the method as more robust. Measuring the angle of curvature between H7-helices (method 1) produces somewhat underestimated values of the curvature per dimer. Method (2), while at first glance generating the bending angle values, consistent the with estimates of curved protofilaments from cryoelectron microscopy, significantly overestimates the angles in the straight structures. For the structures of tubulin tetramers in complex with the stathmin protein, the bending angles calculated with all three metrics varied quite significantly for the first and second dimers (up to 20% or more), which indicates the sensitivity of all metrics to slight variations in the conformation of tubulin dimers within these complexes. A detailed description of the procedures for measuring the bending of tubulin protofilaments, as well as identifying the advantages and disadvantages of various metrics, will increase the reproducibility and clarity of the analysis of tubulin structures in the future, as well as it will hopefully make it easier to compare the results obtained by various scientific groups.

This article discusses the influence of the shadow, informal and household sectors on the dynamics of a stochastic model with heterogeneous (heterogeneous) agents. The study uses the integration of the general equilibrium approach to explain the behavior of demand, supply and prices in an economy with several interacting markets, and a multi-agent approach. The analyzed model describes an economy with aggregated uncertainty and with an infinite number of heterogeneous agents (households). The source of heterogeneity is the idiosyncratic income shocks of agents in the legal and shadow sectors of the economy. In the analysis, an algorithm is used to approximate the dynamics of the distribution function of the capital stocks of individual agents — the dynamics of its first and second moments. The synthesis of the agent approach and the general equilibrium approach is carried out using computer implementation of the recursive feedback between microagents and macroenvironment. The behavior of the impulse response functions of the main variables of the model confirms the positive influence of the shadow economy (below a certain limit) on minimizing the rate of decline in economic indicators during recessions, especially for developing economies. The scientific novelty of the study is the combination of a multi-agent approach and a general equilibrium approach for modeling macroeconomic processes at the regional and national levels. Further research prospects may be associated with the use of more detailed general equilibrium models, which allow, in particular, to describe the behavior of heterogeneous groups of agents in the entrepreneurial sector of the economy.

The paper presents results of numerical modeling of stress-strain state of jack-up rigs used for shelf hydrocarbon reservoirs exploitation. The work studied the equilibrium stress state of a jack-up rig standing on seafloor and mechanical behavior of the rig under seismic loading. Surface elastic wave caused by a distant earthquake acts a reason for the loading. Stability of jack-up rig is the main topic of the research, as stability can be lost due to redistribution of stresses and strains in the elements of the rig due to seismic loading. Modeling results revealed that seismic loading can indeed lead to intermittent growth of stresses in particular elements of the rig’s support legs resulting into stability loss. These results were obtained using the finite element-based numerical scheme. The paper contains the proof of modeling results convergence obtained from analysis of one problem — the problem of stresses and strains distributions for the contact problem of a rigid cylinder indenting on elastic half space. The comparison between numerical and analytical solutions proved the used numerical scheme to be correct, as obtained results converged. The paper presents an analysis of the different factors influencing the mechanical behavior of the studied system. These factors include the degree of seismic loading, mechanical properties of seafloor sediments, and depth of support legs penetration. The results obtained from numerical modeling made it possible to formulate preliminary conclusions regarding the need to take site-specific conditions into account whenever planning the use of jack-up rigs, especially, in the regions with seismic activity. The approach presented in the paper can be used to evaluate risks related to offshore hydrocarbon reservoirs exploitation and development, while the reported numerical scheme can be used to solve some contact problems of theory of elasticity with the need to analyze dynamic processes.

The paper investigates the dynamics of a finite-dimensional model describing the interaction of three populations: prey $x(t)$, its consuming predator $y(t)$, and a superpredator $z(t)$ that feeds on both species. Mathematically, the problem is formulated as a system of nonlinear first-order differential equations with the following right-hand side: $[x(1-x)-(y+z)g;\,\eta_1^{}yg-d_1^{}f-\mu_1^{}y;\,\eta_2^{}zg+d_2^{}f-\mu_2^{}z]$, where $\eta_j^{}$, $d_j^{}$, $\mu_j^{}$ ($j=1,\,2$) are positive coefficients. The considered model belongs to the class of cosymmetric dynamical systems under the Lotka\,--\,Volterra functional response $g=x$, $f=yz$, and two parameter constraints: $\mu_2^{}=d_2^{}\left(1+\frac{\mu_1^{}}{d_1^{}}\right)$, $\eta_2^{}=d_2^{}\left(1+\frac{\eta_1^{}}{d_1^{}}\right)$. In this case, a family of equilibria is being of a straight line in phase space. We have analyzed the stability of the equilibria from the family and isolated equilibria. Maps of stationary solutions and limit cycles have been constructed. The breakdown of the family is studied by violating the cosymmetry conditions and using the Holling model $g(x)=\frac x{1+b_1^{}x}$ and the Beddington–DeAngelis model $f(y,\,z)=\frac{yz}{1+b_2^{}y+b_3^{}z}$. To achieve this, the apparatus of Yudovich's theory of cosymmetry is applied, including the computation of cosymmetric defects and selective functions. Through numerical experimentation, invasive scenarios have been analyzed, encompassing the introduction of a superpredator into the predator-prey system, the elimination of the predator, or the superpredator.

Deposit benchmark interest rates are a policy implemented by banking regulators to calculate the interest rates offered to depositors, maintaining equitable and competitive rates within the financial industry. It functions as a benchmark for determining the pricing of different banking products, expenses, and financial choices. The benchmark rate will have a direct impact on the amount of money deposited, which in turn will determine the amount of money available for lending.We are motivated to analyze the influence of deposit benchmark interest rates on the dynamics of banking loans. This study examines the issue using a difference equation of banking loans. In this process, the decision on the loan amount in the next period is influenced by both the present loan volume and the information on its marginal profit. An analysis is made of the loan equilibrium point and its stability. We also analyze the bifurcations that arise in the model. To ensure a stable banking loan, it is necessary to set the benchmark rate higher than the flip value and lower than the transcritical bifurcation values. The confirmation of this result is supported by the bifurcation diagram and its associated Lyapunov exponent. Insufficient deposit benchmark interest rates might lead to chaotic dynamics in banking lending. Additionally, a bifurcation diagram with two parameters is also shown. We do numerical sensitivity analysis by examining contour plots of the stability requirements, which vary with the deposit benchmark interest rate and other parameters. In addition, we examine a nonstandard difference approach for the previous model, assess its stability, and make a comparison with the standard model. The outcome of our study can provide valuable insights to the banking regulator in making informed decisions regarding deposit benchmark interest rates, taking into account several other banking factors.

In this paper, a mathematical model is developed and analyzed to assess the indirect impact of controlling rhinoceros beetles on red palm weevil populations in coconut plantations. The model consists of a system of six non-linear ordinary differential equations (ODEs), capturing the interactions among healthy and infected coconut trees, rhinoceros beetles, red palm weevils, and the oryctes virus. The model ensures biological feasibility through positivity and boundedness analysis. The basic reproduction number $R_0$ is derived using the next-generation matrix method. Both local and global stability of the equilibrium points are analyzed to determine conditions for pest persistence or eradication. Sensitivity analysis identifies the most influential parameters for pest management. Numerical simulations reveal that by effectively controlling the rhinoceros beetle population particularly through infection with the oryctes virus, the spread of the red palm weevil can also be suppressed. This indirect control mechanism helps to protect the coconut tree population more efficiently and supports sustainable pest management in coconut plantations.

Modern mathematical models in the dynamics system “soil–plant” are considered. The components of this system are: agricultural plant, microorganisms of the rhizosphere (root zone of plants), the mineral nutrition elements of plants in their mobile and immobile forms. The model of submitted system based on the analysis of the adopted provisions was developed. The construction of system elements allows to display the coordinated dynamics of these elements among themselves. In particular, the dynamics of mineral nutrition elements in plants and the dynamics of their biomass are determined by the current contents in the rhizosphere of mineral fertilizers and organic origin substances (plant roots, leaves, etc.). The immobility of plants spatial distribution and the mobile spatial nature of microorganisms are assumed. This mechanism is determined by diffusion. Mutual relationships between weeds and pests are suggested. The dynamics of the mineral nutrition elements is determined by the peculiarity of sorption in the soil solution, environmental conditions, organic decomposition and fertilizer application. An analytical study for a system where each of the components is represented by only one species (fertilizer, the association of microorganisms and plants) was performed. An adaptation of the wave propagation model in the “resource–consumer” system (Kolmogorov–Petrovsky–Piskunov waves) has been developed for annual agricultural crops. The developed model has been adapted for the growth of Krasnoufimskaya-100 spring wheat in a vessel on peat lowland soil, where nitrogen, phosphorus, and potassium fertilizers were added variably. Sample distributions are plants biomass and the content of mineral nutrition elements in them. The parametric identification of the model and its adequacy was performed. An assessment of the model adequacy showed a good agreement between the model and experimental data.

The paper provides a comparative analysis of the results obtained by various approaches to modeling the process of artillery shot. In this connection, the main problem of internal ballistics and its particular case of the Lagrange problem are formulated in averaged parameters, where, within the framework of the assumptions of the thermodynamic approach, the distribution of pressure and gas velocity over the projectile space for a channel of variable cross section is taken into account for the first time. The statement of the Lagrange problem is also presented in the framework of the gas-dynamic approach, taking into account the spatial (one-dimensional and two-dimensional axisymmetric) changes in the characteristics of the ballistic process. The control volume method is used to numerically solve the system of Euler gas-dynamic equations. Gas parameters at the boundaries of control volumes are determined using a selfsimilar solution to the Riemann problem. Based on the Godunov method, a modification of the Osher scheme is proposed, which allows to implement a numerical calculation algorithm with a second order of accuracy in coordinate and time. The solutions obtained in the framework of the thermodynamic and gas-dynamic approaches are compared for various loading parameters. The effect of projectile mass and chamber broadening on the distribution of the ballistic parameters of the shot and the dynamics of the projectile motion was studied. It is shown that the thermodynamic approach, in comparison with the gas-dynamic approach, leads to a systematic overestimation of the estimated muzzle velocity of the projectile in the entire range of parameters studied, while the difference in muzzle velocity can reach 35%. At the same time, the discrepancy between the results obtained in the framework of one-dimensional and two-dimensional gas-dynamic models of the shot in the same range of change in parameters is not more than 1.3%.

A spatial gas-dynamic formulation of the backpressure problem is given, which describes the change in pressure in front of an accelerating projectile as it moves along the barrel channel. It is shown that accounting the projectile’s front, considered in the two-dimensional axisymmetric formulation of the problem, leads to a significant difference in the pressure fields behind the front of the shock wave, compared with the solution in the framework of the onedimensional formulation of the problem, where the projectile’s front is not possible to account. It is concluded that this can significantly affect the results of modeling ballistics of a shot at high shooting velocities.

This paper is dedicated to the analysis of medical and biological data obtained through locomotor training and testing of astronauts conducted both on Earth and during spaceflight. These experiments can be described as the astronaut’s movement on a treadmill according to a predefined regimen in various speed modes. During these modes, not only the speed is recorded but also a range of parameters, including heart rate, ground reaction force, and others, are collected. In order to analyze the dynamics of the astronaut’s condition over an extended period, it is necessary to perform a qualitative segmentation of their movement modes to independently assess the target metrics. This task becomes particularly relevant in the development of an autonomous life support system for astronauts that operates without direct supervision from Earth. The segmentation of target data is complicated by the presence of various anomalies, such as deviations from the predefined regimen, arbitrary and varying duration of mode transitions, hardware failures, and other factors. The paper includes a detailed review of several contemporary retrospective (offline) nonparametric methods for detecting multiple changepoints, which refer to sudden changes in the properties of the observed time series occurring at unknown moments. Special attention is given to algorithms and statistical measures that determine the homogeneity of the data and methods for detecting change points. The paper considers approaches based on dynamic programming and sliding window methods. The second part of the paper focuses on the numerical modeling of these methods using characteristic examples of experimental data, including both “simple” and “complex” speed profiles of movement. The analysis conducted allowed us to identify the preferred methods, which will be further evaluated on the complete dataset. Preference is given to methods that ensure the closeness of the markup to a reference one, potentially allow the detection of both boundaries of transient processes, as well as are robust relative to internal parameters.

Coconut plantation plays a vital role in the economy and source of living for millions of farmers around the world, especially in tropical regions. The rugose spiraling whitefly is a highly destructive pest causing severe damage to coconut trees and significantly reducing their productivity. The aim of this paper is to develop and analyze a mathematical model that captures the dynamics of whitefly and to highlight the benefits of using biological control to mitigate the impact of pest damaging coconut palms. To be more realistic, a stage-structured model with maturation delay and lag in the implementation of the control measures has been considered in the model. We identify the equilibrium points of the system and perform a stability analysis to assess the system behavior. The numerical simulation of the proposed system is also reported. The findings reveal that introducing the population of parasitoids can effectively reduce the rugose spiraling whitefly population presenting a promising strategy for mitigating the pest’s impact.