Результаты поиска по 'energy transfer':
Найдено статей: 32
  1. Корнева С.А., Chernyaev A.P., Osipov A.N.
    Kinetic modeling of radiation-induced DNA double-strand break repair incorporating an ultraslow component
    Computer Research and Modeling, 2026, v. 18, no. 4, pp. 989-1003

    A kinetic model of radiation-induced DNA double-strand break repair with an ultraslow component of complex damage is proposed. The model was parameterized using experimental time courses of $\gamma$H2AX and pATM foci in human mesenchymal stem cells after exposure to $\gamma$-rays (60Co) and 14.1 MeV neutrons at a dose of 0.5 Gy. The standard two-component scheme reproduced the early response phase (0.5–6 h) but systematically underestimated the residual marker signal at 24 h, especially after neutron irradiation. Introducing an ultraslow component allowed both the early and late phases of the response to be described without fitting separate kinetic parameters for different radiation types. The differences between γ-irradiation and neutrons were introduced only through the distribution of damage between fractions, including fixed ultraslow fractions $\pi g = 0.15$ and $\pi n = 0.40$. Model comparison using $\chi^2$ and AIC, together with bootstrap analysis and local sensitivity assessment, supports the robustness of the conclusion that an ultraslow damage fraction is required to describe late post-radiation signaling.

    Keywords: DNA double-strand breaks, DNA repair, kinetic modeling, ultraslow damage fraction, linear energy transfer (LET), neutron irradiation, DNA damage markers.
  2. Maslakov A.S.
    Describing processes in photosynthetic reaction center ensembles using a Monte Carlo kinetic model
    Computer Research and Modeling, 2020, v. 12, no. 5, pp. 1207-1221

    Photosynthetic apparatus of a plant cell consists of multiple photosynthetic electron transport chains (ETC). Each ETC is capable of capturing and utilizing light quanta, that drive electron transport along the chain. Light assimilation efficiency depends on the plant’s current physiological state. The energy of the part of quanta that cannot be utilized, dissipates into heat, or is emitted as fluorescence. Under high light conditions fluorescence levels gradually rise to the maximum level. The curve describing that rise is called fluorescence rise (FR). It has a complex shape and that shape changes depending on the photosynthetic apparatus state. This gives one the opportunity to investigate that state only using the non invasive measuring of the FR.

    When measuring fluorescence in experimental conditions, we get a response from millions of photosynthetic units at a time. In order to reproduce the probabilistic nature of the processes in a photosynthetic ETC, we created a Monte Carlo model of this chain. This model describes an ETC as a sequence of electron carriers in a thylakoid membrane, connected with each other. Those carriers have certain probabilities of capturing light photons, transferring excited states, or reducing each other, depending on the current ETC state. The events that take place in each of the model photosynthetic ETCs are registered, accumulated and used to create fluorescence rise and electron carrier redox states accumulation kinetics. This paper describes the model structure, the principles of its operation and the relations between certain model parameters and the resulting kinetic curves shape. Model curves include photosystem II reaction center fluorescence rise and photosystem I reaction center redox state change kinetics under different conditions.

    Keywords: kinetic Monte Carlo method, photosystem, electron transport, oxygen evolving complex, plastoquinone pool, model.
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