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The process of heat conduction, accompanied by the first order phase transitions is discussed in this article. Using cellular automates simulation was investigated class of problems that have broad application in practice. In this paper we calculate the temperature distribution in the depth of the soil at different times for a problem of freezing of moist soil. Another task — zone growing — has been modeled by cellular automates too. The coincidence of real and modeling parameters of the system confirms the feasibility of using the selected method of modeling of physical processes.

The study of the development of π-periodic perturbations of a converging spherical shock wave leading to cumulation limitation is performed. The study is based on 3D hydrodynamic calculations with the Carnahan – Starling equation of state for hard sphere fluid. The method of solving the Euler equations on moving (compressing) grids allows one to trace the evolution of the converging shock wave front with high accuracy in a wide range of its radius. The compression rate of the computational grid is adapted to the motion of the shock wave front, while the motion of the boundaries of the computational domain satisfy the condition of its supersonic velocity relative to the medium. This leads to the fact that the solution is determined only by the initial data at the grid compression stage. The second order TVD scheme is used to reconstruct the vector of conservative variables at the boundaries of the computational cells in combination with the Rusanov scheme for calculating the numerical vector of flows. The choice is due to a strong tendency for the manifestation of carbuncle-type numerical instability in the calculations, which is known for other classes of flows. In the three-dimensional case of the observed force, the carbuncle effect was obtained for the first time, which is explained by the specific nature of the flow: the concavity of the shock wave front in the direction of motion, the unlimited (in the symmetric case) growth of the Mach number, and the stationarity of the front on the computational grid. The applied numerical method made it possible to study the detailed flow pattern on the scale of cumulation termination, which is impossible within the framework of the Whitham method of geometric shock wave dynamics, which was previously used to calculate converging shock waves. The study showed that the limitation of cumulation is associated with the transition from the Mach interaction of converging shock wave segments to a regular one due to the progressive increase in the ratio of the azimuthal velocity at the shock wave front to the radial velocity with a decrease in its radius. It was found that this ratio is represented as a product of a limited oscillating function of the radius and a power function of the radius with an exponent depending on the initial packing density in the hard sphere model. It is shown that increasing the packing density parameter in the hard sphere model leads to a significant increase in the pressures achieved in a shock wave with broken symmetry. For the first time in the calculation, it is shown that at the scale of cumulation termination, the flow is accompanied by the formation of high-energy vortices, which involve the substance that has undergone the greatest shock-wave compression. Influencing heat and mass transfer in the region of greatest compression, this circumstance is important for current practical applications of converging shock waves for the purpose of initiating reactions (detonation, phase transitions, controlled thermonuclear fusion).

The repressilator is the first genetic regulatory network in synthetic biology, which was artificially constructed in 2000. It is a closed network of three genetic elements $lacI$, $\lambda cI$ and $tetR$, which have a natural origin, but are not found in nature in such a combination. The promoter of each of the three genes controls the next cistron via the negative feedback, suppressing the expression of the neighboring gene. In our previous paper [Bratsun et al., 2018], we proposed a mathematical model of a delayed repressillator and studied its properties within the framework of a deterministic description. We assume that delay can be both natural, i.e. arises during the transcription / translation of genes due to the multistage nature of these processes, and artificial, i.e. specially to be introduced into the work of the regulatory network using gene engineering technologies. In this work, we apply the stochastic description of dynamic processes in a delayed repressilator, which is an important addition to deterministic analysis due to the small number of molecules involved in gene regulation. The stochastic study is carried out numerically using the Gillespie algorithm, which is modified for time delay systems. We present the description of the algorithm, its software implementation, and the results of benchmark simulations for a onegene delayed autorepressor. When studying the behavior of a repressilator, we show that a stochastic description in a number of cases gives new information about the behavior of a system, which does not reduce to deterministic dynamics even when averaged over a large number of realizations. We show that in the subcritical range of parameters, where deterministic analysis predicts the absolute stability of the system, quasi-regular oscillations may be excited due to the nonlinear interaction of noise and delay. Earlier, we have discovered within the framework of the deterministic description, that there exists a long-lived transient regime, which is represented in the phase space by a slow manifold. This mode reflects the process of long-term synchronization of protein pulsations in the work of the repressilator genes. In this work, we show that the transition to the cooperative mode of gene operation occurs a two order of magnitude faster, when the effect of the intrinsic noise is taken into account. We have obtained the probability distribution of moment when the phase trajectory leaves the slow manifold and have determined the most probable time for such a transition. The influence of the intrinsic noise of chemical reactions on the dynamic properties of the repressilator is discussed.