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An integer-valued mathematical model of lake communities: Chaotic and long-period oscillations in the fish population size
Computer Research and Modeling, 2016, v. 8, no. 2, pp. 229-239Views (last year): 6.We present the results of a mathematical model for the aquatic communities which include zooplankton, planktivorous fish and predator fish. The aquatic populations are considered to be body mass- and agestructured, while the trophic relations between the populations to be correspondingly status-specific. The model reproduces diverse dynamic regimes as such steady states and oscillations in the population size. Oscillations in the fish population size are shown to be both regular and irregular. We show that the period of the regular oscillations can be up to decades. The irregular oscillations are shown to be both chaotic and non-chaotic. Analyzing the dynamics in the model parameter space has enabled us to conclude that predictability of fish population dynamics can face difficulties both due to dynamical chaos and to the competition between various dynamical regimes caused by variations in the model parameters, specifically in the zooplankton growth rate.
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CABARET scheme implementation for free shear layer modeling
Computer Research and Modeling, 2017, v. 9, no. 6, pp. 881-903Views (last year): 17.In present paper we reexamine the properties of CABARET numerical scheme formulated for a weakly compressible fluid flow basing the results of free shear layer modeling. Kelvin–Helmholtz instability and successive generation of two-dimensional turbulence provide a wide field for a scheme analysis including temporal evolution of the integral energy and enstrophy curves, the vorticity patterns and energy spectra, as well as the dispersion relation for the instability increment. The most part of calculations is performed for Reynolds number Re=4×105 for square grids sequentially refined in the range of 1282−20482 nodes. An attention is paid to the problem of underresolved layers generating a spurious vortex during the vorticity layers roll-up. This phenomenon takes place only on a coarse grid with 1282 nodes, while the fully regularized evolution pattern of vorticity appears only when approaching 10242-node grid. We also discuss the vorticity resolution properties of grids used with respect to dimensional estimates for the eddies at the borders of the inertial interval, showing that the available range of grids appears to be sufficient for a good resolution of small–scale vorticity patches. Nevertheless, we claim for the convergence achieved for the domains occupied by large-scale structures.
The generated turbulence evolution is consistent with theoretical concepts imposing the emergence of large vortices, which collect all the kinetic energy of motion, and solitary small-scale eddies. The latter resemble the coherent structures surviving in the filamentation process and almost noninteracting with other scales. The dissipative characteristics of numerical method employed are discussed in terms of kinetic energy dissipation rate calculated directly and basing theoretical laws for incompressible (via enstrophy curves) and compressible (with respect to the strain rate tensor and dilatation) fluid models. The asymptotic behavior of the kinetic energy and enstrophy cascades comply with two-dimensional turbulence laws E(k)∝k−3,ω2(k)∝k−1. Considering the instability increment as a function of dimensionless wave number shows a good agreement with other papers, however, commonly used method of instability growth rate calculation is not always accurate, so some modification is proposed. Thus, the implemented CABARET scheme possessing remarkably small numerical dissipation and good vorticity resolution is quite competitive approach compared to other high-order accuracy methods
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Critical rate of computing net increase for providing the infinity faultless work
Computer Research and Modeling, 2009, v. 1, no. 1, pp. 33-39Fault-tolerance of a finite computing net with arbitrary graph, containing elements with certain probability of fault and restore, is analyzed. Algorithm for net growth at each work cycle is suggested. It is shown that if the rate of net increase is sufficiently big then the probability of infinity faultless work is positive. Estimated critical net increase rate is logarithmic over the number of work cycles.
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Numerical simulation of converging spherical shock waves with symmetry violation
Computer Research and Modeling, 2025, v. 17, no. 1, pp. 59-71The study of the development of π-periodic perturbations of a converging spherical shock wave leading to cumulation limitation is performed. The study is based on 3D hydrodynamic calculations with the Carnahan – Starling equation of state for hard sphere fluid. The method of solving the Euler equations on moving (compressing) grids allows one to trace the evolution of the converging shock wave front with high accuracy in a wide range of its radius. The compression rate of the computational grid is adapted to the motion of the shock wave front, while the motion of the boundaries of the computational domain satisfy the condition of its supersonic velocity relative to the medium. This leads to the fact that the solution is determined only by the initial data at the grid compression stage. The second order TVD scheme is used to reconstruct the vector of conservative variables at the boundaries of the computational cells in combination with the Rusanov scheme for calculating the numerical vector of flows. The choice is due to a strong tendency for the manifestation of carbuncle-type numerical instability in the calculations, which is known for other classes of flows. In the three-dimensional case of the observed force, the carbuncle effect was obtained for the first time, which is explained by the specific nature of the flow: the concavity of the shock wave front in the direction of motion, the unlimited (in the symmetric case) growth of the Mach number, and the stationarity of the front on the computational grid. The applied numerical method made it possible to study the detailed flow pattern on the scale of cumulation termination, which is impossible within the framework of the Whitham method of geometric shock wave dynamics, which was previously used to calculate converging shock waves. The study showed that the limitation of cumulation is associated with the transition from the Mach interaction of converging shock wave segments to a regular one due to the progressive increase in the ratio of the azimuthal velocity at the shock wave front to the radial velocity with a decrease in its radius. It was found that this ratio is represented as a product of a limited oscillating function of the radius and a power function of the radius with an exponent depending on the initial packing density in the hard sphere model. It is shown that increasing the packing density parameter in the hard sphere model leads to a significant increase in the pressures achieved in a shock wave with broken symmetry. For the first time in the calculation, it is shown that at the scale of cumulation termination, the flow is accompanied by the formation of high-energy vortices, which involve the substance that has undergone the greatest shock-wave compression. Influencing heat and mass transfer in the region of greatest compression, this circumstance is important for current practical applications of converging shock waves for the purpose of initiating reactions (detonation, phase transitions, controlled thermonuclear fusion).
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Mathematical model of tumor growth with migration and proliferation dichotomy
Computer Research and Modeling, 2009, v. 1, no. 4, pp. 415-422Mathematical model of infiltrative tumour growth taking into account transitions between two possible states of malignant cell is investigated. These transitions are considered to depend on oxygen level in a threshold manner: high oxygen concentration allows cell proliferation, while concentration below some critical value induces cell migration. Dependence of infiltrative tumour spreading rate on model parameters has been studied. It is demonstrated that if the level of tissue oxygenation is high, tumour spreading rate remains almost constant; otherwise the spreading rate decreases dramatically with oxygen depletion.
Keywords: tumor growth, proliferation and migration dichotomy.Views (last year): 3. Citations: 13 (RSCI). -
Investigation of the process of growth of the amplitude of bed waves in rivers and channels
Computer Research and Modeling, 2020, v. 12, no. 6, pp. 1339-1347The work is a theoretical study of the development of bottom instability in rivers and canals. Based on an analytical model of the load of sediment, taking into account the influence of slopes of the bottom surface, bottom pressure and shear stress on the movement of the bottom material and an analytical solution that allows to determine bottom tangential and normal stresses over the periodic bottom, the problem of determining the amplitude growth rate for growing bottom waves is formulated and solved . The obtained solution of the problem allows us to determine the characteristic time of the growth of the bottom wave, the growth rate of the bottom wave and its maximum amplitude, depending on the physical and particle size characteristics of the bottom material and the hydraulic parameters of the water flow. On the example of the development of a periodic sinusoidal bottom wave of low steepness, the verification of the solution obtained for the formulated problem is carried out. The obtained analytical solution to the problem allows us to determine the growth rate of the amplitude of the bottom wave from the current value of its amplitude. Comparison of the obtained solution with experimental data showed their good qualitative and quantitative agreement.
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Models of phytoplankton distribution over chlorophyll in various habitat conditions. Estimation of aquatic ecosystem bioproductivity
Computer Research and Modeling, 2021, v. 13, no. 6, pp. 1177-1190A model of the phytoplankton abundance dynamics depending on changes in the content of chlorophyll in phytoplankton under the influence of changing environmental conditions is proposed. The model takes into account the dependence of biomass growth on environmental conditions, as well as on photosynthetic chlorophyll activity. The light and dark stages of photosynthesis have been identified. The processes of chlorophyll consumption during photosynthesis in the light and the growth of chlorophyll mass together with phytoplankton biomass are described. The model takes into account environmental conditions such as mineral nutrients, illumination and water temperature. The model is spatially distributed, the spatial variable corresponds to mass fraction of chlorophyll in phytoplankton. Thereby possible spreads of the chlorophyll contents in phytoplankton are taken into consideration. The model calculates the density distribution of phytoplankton by the proportion of chlorophyll in it. In addition, the rate of production of new phytoplankton biomass is calculated. In parallel, point analogs of the distributed model are considered. The diurnal and seasonal (during the year) dynamics of phytoplankton distribution by chlorophyll fraction are demonstrated. The characteristics of the rate of primary production in daily or seasonally changing environmental conditions are indicated. Model characteristics of the dynamics of phytoplankton biomass growth show that in the light this growth is about twice as large as in the dark. It shows, that illumination significantly affects the rate of production. Seasonal dynamics demonstrates an accelerated growth of biomass in spring and autumn. The spring maximum is associated with warming under the conditions of biogenic substances accumulated in winter, and the autumn, slightly smaller maximum, with the accumulation of nutrients during the summer decline in phytoplankton biomass. And the biomass in summer decreases, again due to a deficiency of nutrients. Thus, in the presence of light, mineral nutrition plays the main role in phytoplankton dynamics.
In general, the model demonstrates the dynamics of phytoplankton biomass, qualitatively similar to classical concepts, under daily and seasonal changes in the environment. The model seems to be suitable for assessing the bioproductivity of aquatic ecosystems. It can be supplemented with equations and terms of equations for a more detailed description of complex processes of photosynthesis. The introduction of variables in the physical habitat space and the conjunction of the model with satellite information on the surface of the reservoir leads to model estimates of the bioproductivity of vast marine areas. Introduction of physical space variables habitat and the interface of the model with satellite information about the surface of the basin leads to model estimates of the bioproductivity of vast marine areas.
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Multistability for system of three competing species
Computer Research and Modeling, 2022, v. 14, no. 6, pp. 1325-1342The study of the Volterra model describing the competition of three types is carried out. The corresponding system of first-order differential equations with a quadratic right-hand side, after a change of variables, reduces to a system with eight parameters. Two of them characterize the growth rates of populations; for the first species, this parameter is taken equal to one. The remaining six coefficients define the species interaction matrix. Previously, in the analytical study of the so-called symmetric model [May, Leonard, 1975] and the asymmetric model [Chi, Wu, Hsu, 1998] with growth factors equal to unity, relations were established for the interaction coefficients, under which the system has a one-parameter family of limit cycles. In this paper, we carried out a numerical-analytical study of the complete system based on a cosymmetric approach, which made it possible to determine the ratios for the parameters that correspond to families of equilibria. Various variants of oneparameter families are obtained and it is shown that they can consist of both stable and unstable equilibria. In the case of an interaction matrix with unit coefficients, a multicosymmetry of the system and a two-parameter family of equilibria are found that exist for any growth coefficients. For various interaction coefficients, the values of growth parameters are found at which periodic regimes are realized. Their belonging to the family of limit cycles is confirmed by the calculation of multipliers. In a wide range of values that violate the relationships under which the existence of cycles is ensured, a slow oscillatory establishment, typical of the destruction of cosymmetry, is obtained. Examples are given where a fixed value of one growth parameter corresponds to two values of another parameter, so that there are different families of periodic regimes. Thus, the variability of scenarios for the development of a three-species system has been established.
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Survival task for the mathematical model of glioma therapy with blood-brain barrier
Computer Research and Modeling, 2018, v. 10, no. 1, pp. 113-123Views (last year): 14.The paper proposes a mathematical model for the therapy of glioma, taking into account the blood-brain barrier, radiotherapy and antibody therapy. The parameters were estimated from experimental data and the evaluation of the effect of parameter values on the effectiveness of treatment and the prognosis of the disease were obtained. The possible variants of sequential use of radiotherapy and the effect of antibodies have been explored. The combined use of radiotherapy with intravenous administration of mab Cx43 leads to a potentiation of the therapeutic effect in glioma.
Radiotherapy must precede chemotherapy, as radio exposure reduces the barrier function of endothelial cells. Endothelial cells of the brain vessels fit tightly to each other. Between their walls are formed so-called tight contacts, whose role in the provision of BBB is that they prevent the penetration into the brain tissue of various undesirable substances from the bloodstream. Dense contacts between endothelial cells block the intercellular passive transport.
The mathematical model consists of a continuous part and a discrete one. Experimental data on the volume of glioma show the following interesting dynamics: after cessation of radio exposure, tumor growth does not resume immediately, but there is some time interval during which glioma does not grow. Glioma cells are divided into two groups. The first group is living cells that divide as fast as possible. The second group is cells affected by radiation. As a measure of the health of the blood-brain barrier system, the ratios of the number of BBB cells at the current moment to the number of cells at rest, that is, on average healthy state, are chosen.
The continuous part of the model includes a description of the division of both types of glioma cells, the recovery of BBB cells, and the dynamics of the drug. Reducing the number of well-functioning BBB cells facilitates the penetration of the drug to brain cells, that is, enhances the action of the drug. At the same time, the rate of division of glioma cells does not increase, since it is limited not by the deficiency of nutrients available to cells, but by the internal mechanisms of the cell. The discrete part of the mathematical model includes the operator of radio interaction, which is applied to the indicator of BBB and to glial cells.
Within the framework of the mathematical model of treatment of a cancer tumor (glioma), the problem of optimal control with phase constraints is solved. The patient’s condition is described by two variables: the volume of the tumor and the condition of the BBB. The phase constraints delineate a certain area in the space of these indicators, which we call the survival area. Our task is to find such treatment strategies that minimize the time of treatment, maximize the patient’s rest time, and at the same time allow state indicators not to exceed the permitted limits. Since the task of survival is to maximize the patient’s lifespan, it is precisely such treatment strategies that return the indicators to their original position (and we see periodic trajectories on the graphs). Periodic trajectories indicate that the deadly disease is translated into a chronic one.
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Experimental identification of the organization of mental calculations of the person on the basis of algebras of different associativity
Computer Research and Modeling, 2019, v. 11, no. 2, pp. 311-327Views (last year): 16.The work continues research on the ability of a person to improve the productivity of information processing, using parallel work or improving the performance of analyzers. A person receives a series of tasks, the solution of which requires the processing of a certain amount of information. The time and the validity of the decision are recorded. The dependence of the average solution time on the amount of information in the problem is determined by correctly solved problems. In accordance with the proposed method, the problems contain calculations of expressions in two algebras, one of which is associative and the other is nonassociative. To facilitate the work of the subjects in the experiment were used figurative graphic images of elements of algebra. Non-associative calculations were implemented in the form of the game “rock-paper-scissors”. It was necessary to determine the winning symbol in the long line of these figures, considering that they appear sequentially from left to right and play with the previous winner symbol. Associative calculations were based on the recognition of drawings from a finite set of simple images. It was necessary to determine which figure from this set in the line is not enough, or to state that all the pictures are present. In each problem there was no more than one picture. Computation in associative algebra allows the parallel counting, and in the absence of associativity only sequential computations are possible. Therefore, the analysis of the time for solving a series of problems reveals a consistent uniform, sequential accelerated and parallel computing strategy. In the experiments it was found that all subjects used a uniform sequential strategy to solve non-associative problems. For the associative task, all subjects used parallel computing, and some have used parallel computing acceleration of the growth of complexity of the task. A small part of the subjects with a high complexity, judging by the evolution of the solution time, supplemented the parallel account with a sequential stage of calculations (possibly to control the solution). We develop a special method for assessing the rate of processing of input information by a person. It allowed us to estimate the level of parallelism of the calculation in the associative task. Parallelism of level from two to three was registered. The characteristic speed of information processing in the sequential case (about one and a half characters per second) is twice less than the typical speed of human image recognition. Apparently the difference in processing time actually spent on the calculation process. For an associative problem in the case of a minimum amount of information, the solution time is near to the non-associativity case or less than twice. This is probably due to the fact that for a small number of characters recognition almost exhausts the calculations for the used non-associative problem.
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International Interdisciplinary Conference "Mathematics. Computing. Education"