All issues

In this article, a meshfree-spectral method for numerical investigation of dynamics of planar geophysical flows is proposed. We investigate inviscid incompressible fluid flows with the presence of planetary rotation. Mathematically this problem is described by the non-steady system of two partial differential equations in terms of stream and vorticity functions with different boundary conditions (closed flow region and periodic conditions). The proposed method is based on several assumptions. First of all, the vorticity field is given by its values on the set of particles. The function of vorticity distribution is approximated by piecewise cubic polynomials. Coefficients of polynomials are found by least squares method. The stream function is calculated by using the spectral global Bubnov –Galerkin method at each time step.

The dynamics of fluid particles is calculated by pseudo-symplectic Runge –Kutta method. A detailed version of the method for periodic boundary conditions is described in this article for the first time. The adequacy of numerical scheme was examined on test examples. The dynamics of the configuration of four identical circular vortex patches with constant vorticity located at the vertices of a square with a center at the pole is investigated by numerical experiments. The effect of planetary rotation and the radius of patches on the dynamics and formation of vortex structures is studied. It is shown that, depending on the direction of rotation, the Coriolis force can enhance or slow down the processes of interaction and mixing of the distributed vortices. At large radii the vortex structure does not stabilize.

In this paper, a time-dependent natural convective heat transfer in a closed square cavity filled with non- Newtonian fluid was considered in the presence of an isothermal energy source located on the lower wall of the region under consideration. The vertical boundaries were kept at constant low temperature, while the horizontal walls were completely insulated. The behavior of a non-Newtonian fluid was described by the Ostwald de Ville power law. The process under study was described by transient partial differential equations using dimensionless non-primitive variables “stream function – vorticity – temperature”. This method allows excluding the pressure field from the number of unknown parameters, while the non-dimensionalization allows generalizing the obtained results to a variety of physical formulations. The considered mathematical model with the corresponding boundary conditions was solved on the basis of the finite difference method. The algebraic equation for the stream function was solved by the method of successive lower relaxation. Discrete analogs of the vorticity equation and energy equation were solved by the Thomas algorithm. The developed numerical algorithm was tested in detail on a class of model problems and good agreement with other authors was achieved. Also during the study, the mesh sensitivity analysis was performed that allows choosing the optimal mesh.

As a result of numerical simulation of unsteady natural convection of a non-Newtonian power-law fluid in a closed square cavity with a local isothermal energy source, the influence of governing parameters was analyzed including the impact of the Rayleigh number in the range 104–106, power-law index $n = 0.6–1.4$, and also the position of the heating element on the flow structure and heat transfer performance inside the cavity. The analysis was carried out on the basis of the obtained distributions of streamlines and isotherms in the cavity, as well as on the basis of the dependences of the average Nusselt number. As a result, it was established that pseudoplastic fluids $(n < 1)$ intensify heat removal from the heater surface. The increase in the Rayleigh number and the central location of the heating element also correspond to the effective cooling of the heat source.

The propagation of stable coherent entities of an electromagnetic field in nonlinear media with parameters varying in space can be described in the framework of iterations of nonlinear integral transformations. It is shown that for a set of geometries relevant to typical problems of nonlinear optics, numerical modeling by reducing to dynamical systems with discrete time and continuous spatial variables to iterates of local nonlinear Feigenbaum and Ikeda mappings and nonlocal diffusion-dispersion linear integral transforms is equivalent to partial differential equations of the Ginzburg–Landau type in a fairly wide range of parameters. Such nonlocal mappings, which are the products of matrix operators in the numerical implementation, turn out to be stable numerical- difference schemes, provide fast convergence and an adequate approximation of solutions. The realism of this approach allows one to take into account the effect of noise on nonlinear dynamics by superimposing a spatial noise specified in the form of a multimode random process at each iteration and selecting the stable wave configurations. The nonlinear wave formations described by this method include optical phase singularities, spatial solitons, and turbulent states with fast decay of correlations. The particular interest is in the periodic configurations of the electromagnetic field obtained by this numerical method that arise as a result of phase synchronization, such as optical lattices and self-organized vortex clusters.

In this paper, we consider the interaction of a kink of the $\varphi^4$ equation with two identical extended impurities. An extended impurity is described using a rectangular function. The case of an attractive impurity is analyzed. Using analytical methods, we consider the case of small amplitudes of localized waves, when it is possible to linearize the equations of motion. For the numerical solution, the method of lines for partial differential equations was used. To find the oscillation frequencies of waves localized on impurities, the discrete Fourier transform is used. The kink was launched in the direction of the impurities with different initial velocities. The distance between the two impurities was also varied. It is shown that when a kink interacts with impurities, long-lived localized breather-type waves are excited on them. Their structure and coupled dynamics are investigated. It is determined how, by changing the parameters of the impurities and the distance between them, it is possible to control the type and dynamic parameters of the coupled oscillations of the waves localized on the impurities. Possible solutions in the form of in-phase, antiphase oscillations, in the form of beats are found. The oscillations of localized waves occur with the emission of small-amplitude waves. The spectrum of these emissions consists of two frequencies. The first is approximately equal to $\sqrt{2}$, which corresponds to the frequency value for the wobbling breather tail of the $\varphi^4$ equation. The second is approximately equal to the doubled frequency of impurity mode oscillations. The presence of two possible frequencies for coupled localized oscillations is found both analytically and numerically. It is shown that the frequencies strongly depend on the distance between impurities. With increasing distance between impurities, the frequencies merge into one — frequency obtained for the case of a single impurity. The dependences of the frequencies on the distance between impurities found numerically and analytically coincide well for large distances, when the interaction between impurities is weak, and begin to differ noticeably at small distances, when the interaction between impurities is strong. The analytical value of the obtained frequencies is always greater than the numerical ones. It is shown that the dependence of the amplitude of localized waves on the initial kink velocity has several minima and maxima.

A method and a complex of computer programs are developed for the numerical simulation of the polaron states excitation process in condensed media. A numerical study of the polaron states formation in water under the action of the ultraviolet range laser irradiation is carried out. Our approach allows to reproduce the experimental data of the hydrated electrons formation. A numerical scheme is presented for the solution of the respective system of nonlinear partial differential equations. Parallel implementation is based on the MPI technique. The numerical results are given in comparison with the experimental data and theoretical estimations.

One of the destroying natural processes is the initiation of the regional seismic activity. It leads to a large number of human deaths. Much effort has been made to develop precise and robust methods for the estimation of the seismic stability of buildings. One of the most common approaches is the natural frequency method. The obvious drawback of this approach is a low precision due to the model oversimplification. The other method is a detailed simulation of dynamic processes using the finite-element method. Unfortunately, the quality of simulations is not enough due to the difficulty of setting the correct free boundary condition. That is why the development of new numerical methods for seismic stability problems is a high priority nowadays.

The present work is devoted to the study of spatial dynamic processes occurring in geological medium during an earthquake. We describe a method for simulating seismic wave propagation from the hypocenter to the day surface. To describe physical processes, we use a system of partial differential equations for a linearly elastic body of the second order, which is solved numerically by a grid-characteristic method on parallelepiped meshes. The widely used geological hypocenter model, called the “double-couple” model, was incorporated into this numerical algorithm. In this case, any heterogeneities, such as geological layers with curvilinear boundaries, gas and fluid-filled cracks, fault planes, etc., may be explicitly taken into account.

In this paper, seismic waves emitted during the earthquake initiation process are numerically simulated. Two different models are used: the homogeneous half-space and the multilayered geological massif with the day surface. All of their parameters are set based on previously published scientific articles. The adequate coincidence of the simulation results is obtained. And discrepancies may be explained by differences in numerical methods used. The numerical approach described can be extended to more complex physical models of geological media.

A mathematical model of two-phase capillary-nonequilibrium isothermal flows of incompressible phases in a double porosity medium is constructed. A double porosity medium is considered, which is a composition of two porous media with contrasting capillary properties (absolute permeability, capillary pressure). One of the constituent media has high permeability and is conductive, the second is characterized by low permeability and forms an disconnected system of matrix blocks. A feature of the model is to take into account the influence of capillary nonequilibrium on mass transfer between subsystems of double porosity, while the nonequilibrium properties of two-phase flow in the constituent media are described in a linear approximation within the Hassanizadeh model. Homogenization by the method of formal asymptotic expansions leads to a system of partial differential equations, the coefficients of which depend on internal variables determined from the solution of cell problems. Numerical solution of cell problems for a system of partial differential equations is computationally expensive. Therefore, a thermodynamically consistent kinetic equation is formulated for the internal parameter characterizing the phase distribution between the subsystems of double porosity. Dynamic relative phase permeability and capillary pressure in the processes of drainage and impregnation are constructed. It is shown that the capillary nonequilibrium of flows in the constituent subsystems has a strong influence on them. Thus, the analysis and modeling of this factor is important in transfer problems in systems with double porosity.

The article considers the mathematical aspects of the problem of identifying a multicomponent scattering medium based on pulsed multienergy X-ray irradiation data. X-ray diagnostics problems are of considerable interest from both theoretical and practical points of view, and radiographic methods are indispensable in non-destructive testing of products.

Within the framework of a mathematical model based on a non-stationary integro-differential equation of radiation transfer, the inverse problem of finding the attenuation coefficient for radiation known at the boundary of the region and the problem of identifying a substance based on the found values of the attenuation coefficient on a discrete set of irradiation energies of the medium are formulated.

A preliminary processing of a wide list of substances of interest in computed tomography was carried out to determine the possibility of their identification by an approximately specified radiation attenuation coefficient characterizing the medium. When analyzing the degree of proximity of substances in a certain norm, it was found that the set of all possible substances potentially contained in the medium is divided into a finite number of non-intersecting clusters. For a sufficiently short duration of the probing signal, the scattering component of the radiation leaving the medium is asymptotically small. This circumstance allows us to reduce the inverse problem for the radiation transfer equation to the problem of inverting the Radon transform from the attenuation coefficient. The possibility of unambiguous or partial identification of a substance by varying the duration of the probing pulse and the number of energy levels of irradiation of the medium is analyzed using numerical modeling methods on a specially developed digital phantom.

The paper presents a review of recent developments of hybrid discrete-continuous models in cell population dynamics. Such models are widely used in the biological modelling. Cells are considered as individual objects which can divide, die by apoptosis, differentiate and move under external forces. In the simplest representation cells are considered as soft spheres, and their motion is described by Newton’s second law for their centers. In a more complete representation, cell geometry and structure can be taken into account. Cell fate is determined by concentrations of intra-cellular substances and by various substances in the extracellular matrix, such as nutrients, hormones, growth factors. Intra-cellular regulatory networks are described by ordinary differential equations while extracellular species by partial differential equations. We illustrate the application of this approach with some examples including bacteria filament and tumor growth. These examples are followed by more detailed studies of erythropoiesis and immune response. Erythrocytes are produced in the bone marrow in small cellular units called erythroblastic islands. Each island is formed by a central macrophage surrounded by erythroid progenitors in different stages of maturity. Their choice between self-renewal, differentiation and apoptosis is determined by the ERK/Fas regulation and by a growth factor produced by the macrophage. Normal functioning of erythropoiesis can be compromised by the development of multiple myeloma, a malignant blood disorder which leads to a destruction of erythroblastic islands and to sever anemia. The last part of the work is devoted to the applications of hybrid models to study immune response and the development of viral infection. A two-scale model describing processes in a lymph node and other organs including the blood compartment is presented.

The article describes the migration process of a certain population, taking into account the spatial heterogeneity of the local capacity of the ecological niche. It is assumed that this spatial heterogeneity is caused by various natural or artificial factors. The mathematical model of the migration process under consideration is a Cauchy problem on a straight line for some quasi-linear partial differential equation of the first order, which is satisfied by the linear population density under consideration. In this paper, a general solution to this Cauchy problem is found for an arbitrary dependence of the local capacity of an ecological niche on the spatial coordinate. This general solution was applied to describe the migration of the population in question in two different cases: in the case of a dependence of the local capacity of the ecological niche on the spatial coordinate in the form of a smooth step and in the case of a hill-like dependence of the local capacity of the ecological niche on the spatial coordinate. In both cases, the solution to the Cauchy problem is expressed in terms of higher transcendental functions. By applying special relations to the model parameters, these higher transcendental functions are reduced to elementary functions, which makes it possible to obtain exact model solutions explicitly expressed in terms of elementary functions. With the help of these precise solutions, an extensive program of computational experiments has been implemented, showing how the initial population density of the Gaussian form is dispersed by the considered two types of spatial heterogeneity of the local capacity of the ecological niche. These computational experiments have shown that when passing through both step-like and hill-like spatial inhomogeneities of the local capacity of an ecological niche with a narrow Gaussian width of its initial density compared to the characteristic spatial scale of these inhomogeneities, the system forgets its initial state. In particular, if we interpret the system under study as a population living in an extended calm rectilinear river along its bed, then it can be argued that under this initial condition, after the current of this river carries the population under consideration through the area of spatial heterogeneity of the local capacity of the ecological niche, the population density becomes a quasi-rectangular function.