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QUBO formulation of a two-echelon vehicle routing problem with optional activation of intermediate nodes: penalty landscape diagnostics and a hybrid algorithm
Computer Research and Modeling, 2026, v. 18, no. 4, pp. 765-791The haulage of timber from remote logging areas of Siberia is characterized by high transportation costs. Long stretches of unpaved logging roads, seasonal constraints (spring thaw and winter roads), and considerable distances from cutting areas to main transport hubs (50–200 km) make systematic route planning essential.
This paper proposes a mathematical model of the two-echelon vehicle routing problem (2E-VRP) adapted to timber haulage in the macro-region of the Urals and Siberia. The model incorporates variable transportation costs (truck mileage), fixed costs of using each vehicle ($c_{fix}$ = 30 000 RUB per trip), and vehicle-capacity constraints. The problem is transformed into a QUBO (quadratic unconstrained binary optimization) formulation; capacity constraints are integrated through the penalty coefficient $\lambda_{cap}$ = 500. This representation makes the model compatible with modern specialized solvers, including quantum annealers and digital annealers.
The model is tested on the real geography of the Ural and Siberian Federal Districts: 207 nodes in the logistics network, 65 customer enterprises, and 8 main transport hubs. The proposed three-stage “Feasible-First” algorithm constructs a feasible routing plan in 1.7 s and reduces total transportation costs by 69% relative to a baseline genetic algorithm. Subsequent simulated annealing further improves the QUBO objective value by 55%.
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A method of constructing a predictive neural network model of a time series
Computer Research and Modeling, 2020, v. 12, no. 4, pp. 737-756This article studies a method of constructing a predictive neural network model of a time series based on determining the composition of input variables, constructing a training sample and training itself using the back propagation method. Traditional methods of constructing predictive models of the time series are: the autoregressive model, the moving average model or the autoregressive model — the moving average allows us to approximate the time series by a linear dependence of the current value of the output variable on a number of its previous values. Such a limitation as linearity of dependence leads to significant errors in forecasting.
Mining Technologies using neural network modeling make it possible to approximate the time series by a nonlinear dependence. Moreover, the process of constructing of a neural network model (determining the composition of input variables, the number of layers and the number of neurons in the layers, choosing the activation functions of neurons, determining the optimal values of the neuron link weights) allows us to obtain a predictive model in the form of an analytical nonlinear dependence.
The determination of the composition of input variables of neural network models is one of the key points in the construction of neural network models in various application areas that affect its adequacy. The composition of the input variables is traditionally selected from some physical considerations or by the selection method. In this work it is proposed to use the behavior of the autocorrelation and private autocorrelation functions for the task of determining the composition of the input variables of the predictive neural network model of the time series.
In this work is proposed a method for determining the composition of input variables of neural network models for stationary and non-stationary time series, based on the construction and analysis of autocorrelation functions. Based on the proposed method in the Python programming environment are developed an algorithm and a program, determining the composition of the input variables of the predictive neural network model — the perceptron, as well as building the model itself. The proposed method was experimentally tested using the example of constructing a predictive neural network model of a time series that reflects energy consumption in different regions of the United States, openly published by PJM Interconnection LLC (PJM) — a regional network organization in the United States. This time series is non-stationary and is characterized by the presence of both a trend and seasonality. Prediction of the next values of the time series based on previous values and the constructed neural network model showed high approximation accuracy, which proves the effectiveness of the proposed method.
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Models of phytoplankton distribution over chlorophyll in various habitat conditions. Estimation of aquatic ecosystem bioproductivity
Computer Research and Modeling, 2021, v. 13, no. 6, pp. 1177-1190A model of the phytoplankton abundance dynamics depending on changes in the content of chlorophyll in phytoplankton under the influence of changing environmental conditions is proposed. The model takes into account the dependence of biomass growth on environmental conditions, as well as on photosynthetic chlorophyll activity. The light and dark stages of photosynthesis have been identified. The processes of chlorophyll consumption during photosynthesis in the light and the growth of chlorophyll mass together with phytoplankton biomass are described. The model takes into account environmental conditions such as mineral nutrients, illumination and water temperature. The model is spatially distributed, the spatial variable corresponds to mass fraction of chlorophyll in phytoplankton. Thereby possible spreads of the chlorophyll contents in phytoplankton are taken into consideration. The model calculates the density distribution of phytoplankton by the proportion of chlorophyll in it. In addition, the rate of production of new phytoplankton biomass is calculated. In parallel, point analogs of the distributed model are considered. The diurnal and seasonal (during the year) dynamics of phytoplankton distribution by chlorophyll fraction are demonstrated. The characteristics of the rate of primary production in daily or seasonally changing environmental conditions are indicated. Model characteristics of the dynamics of phytoplankton biomass growth show that in the light this growth is about twice as large as in the dark. It shows, that illumination significantly affects the rate of production. Seasonal dynamics demonstrates an accelerated growth of biomass in spring and autumn. The spring maximum is associated with warming under the conditions of biogenic substances accumulated in winter, and the autumn, slightly smaller maximum, with the accumulation of nutrients during the summer decline in phytoplankton biomass. And the biomass in summer decreases, again due to a deficiency of nutrients. Thus, in the presence of light, mineral nutrition plays the main role in phytoplankton dynamics.
In general, the model demonstrates the dynamics of phytoplankton biomass, qualitatively similar to classical concepts, under daily and seasonal changes in the environment. The model seems to be suitable for assessing the bioproductivity of aquatic ecosystems. It can be supplemented with equations and terms of equations for a more detailed description of complex processes of photosynthesis. The introduction of variables in the physical habitat space and the conjunction of the model with satellite information on the surface of the reservoir leads to model estimates of the bioproductivity of vast marine areas. Introduction of physical space variables habitat and the interface of the model with satellite information about the surface of the basin leads to model estimates of the bioproductivity of vast marine areas.
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On the modeling of water obstacles overcoming by Rangifer tarandus L
Computer Research and Modeling, 2019, v. 11, no. 5, pp. 895-910Seasonal migrations and herd instinct are traditionally recognized as wild reindeer (Rangifer tarandus L.) species-specific behavioral signs. These animals are forced to overcome water obstacles during the migrations. Behaviour peculiarities are considered as the result of the selection process, which has chosen among the sets of strategies, as the only evolutionarily stable one, determining the reproduction and biological survival of wild reindeer as a species. Natural processes in the Taimyr population wild reindeer are currently occurring against the background of an increase in the influence of negative factors due to the escalation of the industrial development of the Arctic. That is why the need to identify the ethological features of these animals completely arose. This paper presents the results of applying the classical methods of the theory of optimal control and differential games to the wild reindeer study of the migration patterns in overcoming water barriers, including major rivers. Based on these animals’ ethological features and behavior forms, the herd is presented as a controlled dynamic system, which presents also two classes of individuals: the leader and the rest of the herd, for which their models, describing the trajectories of their movement, are constructed. The models are based on hypotheses, which are the mathematical formalization of some animal behavior patterns. This approach made it possible to find the trajectory of the important one using the methods of the optimal control theory, and in constructing the trajectories of other individuals, apply the principle of control with a guide. Approbation of the obtained results, which can be used in the formation of a common “platform” for the adaptive behavior models systematic construction and as a reserve for the cognitive evolution models fundamental development, is numerically carried out using a model example with observational data on the Werchnyaya Taimyra River.
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Some relationships between thermodynamic characteristics and water vapor and carbon dioxide fluxes in a recently clear-cut area
Computer Research and Modeling, 2017, v. 9, no. 6, pp. 965-980Views (last year): 15. Citations: 1 (RSCI).The temporal variability of exergy of short-wave and long-wave radiation and its relationships with sensible heat, water vapor (H2O) and carbon dioxide (CO2) fluxes on a recently clear-cut area in a mixed coniferous and small-leaved forest in the Tver region is discussed. On the basis of the analysis of radiation and exergy efficiency coefficients suggested by Yu.M. Svirezhev it was shown that during the first eight months after clearcutting the forest ecosystem functions as a "heat engine" i.e. the processes of energy dissipation dominated over processes of biomass production. To validate the findings the statistical analysis of temporary variability of meteorological parameters, as well as, daily fluxes of sensible heat, H2O and CO2 was provided using the trigonometrical polynomials. The statistical models that are linearly depended on an exergy of short-wave and long-wave radiation were obtained for mean daily values of CO2 fluxes, gross primary production of regenerated vegetation and sensible heat fluxes. The analysis of these dependences is also confirmed the results obtained from processing the radiation and exergy efficiency coefficients. The splitting the time series into separate time intervals, e.g. “spring–summer” and “summer–autumn”, allowed revealing that the statistically significant relationships between atmospheric fluxes and exergy were amplified in summer months as the clear-cut area was overgrown by grassy and young woody vegetation. The analysis of linear relationships between time-series of latent heat fluxes and exergy showed their statistical insignificance. The linear relationships between latent heat fluxes and temperature were in turn statistically significant. The air temperature was a key factor improving the accuracy of the models, whereas effect of exergy was insignificant. The results indicated that at the time of active vegetation regeneration within the clear-cut area the seasonal variability of surface evaporation is mainly governed by temperature variation.
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Empirical testing of institutional matrices theory by data mining
Computer Research and Modeling, 2015, v. 7, no. 4, pp. 923-939The paper has a goal to identify a set of parameters of the environment and infrastructure with the most significant impact on institutional-matrices that dominate in different countries. Parameters of environmental conditions includes raw statistical indices, which were directly derived from the databases of open access, as well as complex integral indicators that were by method of principal components. Efficiency of discussed parameters in task of dominant institutional matrices type recognition (X or Y type) was evaluated by a number of methods based on machine learning. It was revealed that greatest informational content is associated with parameters characterizing risk of natural disasters, level of urbanization and the development of transport infrastructure, the monthly averages and seasonal variations of temperature and precipitation.
Keywords: institutional matrices theory, machine learning.Views (last year): 7. Citations: 13 (RSCI). -
Pareto optimal analysis of global warming prevention by geoengineering methods
Computer Research and Modeling, 2015, v. 7, no. 5, pp. 1097-1108Views (last year): 1. Citations: 3 (RSCI).The study is based on a three-dimensional hydrodynamic global climate coupled model, including ocean model with real depths and continents configuration, sea ice evolution model and energy and moisture balance atmosphere model. Aerosol concentration from the year 2010 to 2100 is calculated as a controlling parameter to stabilize mean year surface air temperature. It is shown that by this way it is impossible to achieve the space and seasonal uniform approximation to the existing climate, although it is possible significantly reduce the greenhouse warming effect. Climate will be colder at 0.1–0.2 degrees in the low and mid-latitudes and at high latitudes it will be warmer at 0.2–1.2 degrees. The Pareto frontier is investigated and visualized for two parameters — atmospheric temperature mean square deviation for the winter and summer seasons. The Pareto optimal amount of sulfur emissions would be between 23.5 and 26.5 TgS/year.
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A minimal model of density-dependent population dynamics incorporating sex structure: simulation and application
Computer Research and Modeling, 2025, v. 17, no. 5, pp. 941-961This study proposes and analyzes a discrete-time mathematical model of population dynamics with seasonal reproduction, taking into account the density-dependent regulation and sex structure. In the model, population birth rate depends on the number of females, while density is regulated through juvenile survival, which decreases exponentially with increasing total population size. Analytical and numerical investigations of the model demonstrate that when more than half of both females and males survive, the population exhibits stable dynamics even at relatively high birth rates. Oscillations arise when the limitation of female survival exceeds that of male survival. Increasing the intensity of male survival limitation can stabilize population dynamics, an effect particularly evident when the proportion of female offspring is low. Depending on parameter values, the model exhibits stable, periodic, or irregular dynamics, including multistability, where changes in current population size driven by external factors can shift the system between coexisting dynamic modes. To apply the model to real populations, we propose an approach for estimating demographic parameters based on total abundance data. The key idea is to reduce the two-component discrete model with sex structure to a delay equation dependent only on total population size. In this formulation, the initial sex structure is expressed through total abundance and depends on demographic parameters. The resulting one-dimensional equation was applied to describe and estimate demographic characteristics of ungulate populations in the Jewish Autonomous Region. The delay equation provides a good fit to the observed dynamics of ungulate populations, capturing long-term trends in abundance. Point estimates of parameters fall within biologically meaningful ranges and produce population dynamics consistent with field observations. For moose, roe deer, and musk deer, the model suggests predominantly stable dynamics, while annual fluctuations are primarily driven by external factors and represent deviations from equilibrium. Overall, these estimates enable the analysis of structured population dynamics alongside short-term forecasting based on total abundance data.
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Model of CO2 exchange in a sphagnum peat bog
Computer Research and Modeling, 2016, v. 8, no. 2, pp. 369-377A simple model was developed to describe the dependence of net CO2 exchange in a sphagnum peat bog as a function of incoming solar radiation, air temperature, and soil moisture. It was parameterized using the field measurement data from two neighboring sites in an undisturbed peat bog (the pine mire with shrub and sphagnum and the shrub-sphagnum mire with rare pine) in Moscow Region. Measurements were conducted during the second part of the growing season, when the groundwater level was below 30 cm. It was shown that is a key parameter influencing the photosynthesis and respiration rates of a sphagnum moss and peat soil. The developed model allows to explain from 71 % to 74 % of the variation of CO2 exchange in the peat bog.
Keywords: Sphagnum, peat bog, photosynthesis, respiration, model of CO2 exchange, ground water level.Views (last year): 1. Citations: 3 (RSCI). -
Dynamics regimes of population with non-overlapping generations taking into account genetic and stage structures
Computer Research and Modeling, 2020, v. 12, no. 5, pp. 1165-1190This paper studies a model of a population with non-overlapping generations and density-dependent regulation of birth rate. The population breeds seasonally, and its reproductive potential is determined genetically. The model proposed combines an ecological dynamic model of a limited population with non-overlapping generations and microevolutionary model of its genetic structure dynamics for the case when adaptive trait of birth rate controlled by a single diallelic autosomal locus with allelomorphs A and a. The study showed the genetic composition of the population, namely, will it be polymorphic or monomorphic, is mainly determined by the values of the reproductive potentials of heterozygote and homozygotes. Moreover, the average reproductive potential of mature individuals and intensity of self-regulation processes determine population dynamics. In particularly, increasing the average value of the reproductive potential leads to destabilization of the dynamics of age group sizes. The intensity of self-regulation processes determines the nature of emerging oscillations, since scenario of stability loss of fixed points depends on the values of this parameter. It is shown that patterns of occurrence and evolution of cyclic dynamics regimes are mainly determined by the features of life cycle of individuals in population. The life cycle leading to existence of non-overlapping generation gives isolated subpopulations in different years, which results in the possibility of independent microevolution of these subpopulations and, as a result, the complex dynamics emergence of both stage structure and genetic one. Fixing various adaptive mutations will gradually lead to genetic (and possibly morphological) differentiation and to differences in the average reproductive potentials of subpopulations that give different values of equilibrium subpopulation sizes. Further evolutionary growth of reproductive potentials of limited subpopulations leads to their number fluctuations which can differ in both amplitude and phase.
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