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Optimisation of parameters and structure of a parallel spherical manipulator
Computer Research and Modeling, 2023, v. 15, no. 6, pp. 1523-1534The paper is a study of the mathematical model and kinematics of a parallel spherical manipulator. This type of manipulator was proposed back in the 80s of the last century and has since found application in exoskeletons and rehabilitation robots due to its structure, which allows imitating natural joint movements of the human body.
The Parallel Spherical Manipulator is a robot with three legs and two platforms, a base platform and a mobile platform. Its legs consist of two support links that are arc-shaped. Mathematically, the manipulator can be described using two virtual pyramids that are placed on top of each other.
The paper considers two types of manipulator configurations: classical and asymmetric, and solves basic kinematic problems for each. The study shows that the asymmetric design of the manipulator has the maximum workspace, especially when the motors are mounted at the joints of the manipulator’s links inside legs.
To optimize the parameters of the parallel spherical manipulator, we introduced a metric of usable workspace volume. This metric represents the volume of the sector of the sphere in which the robot does not experience internal collisions or singular states. There are three types of singular states possible within a parallel spherical manipulator — serial, parallel, and mixed singularity. We used all three types of singularities to calculate the useful volume. In our research work, we solved the problem related to maximizing the usable volume of the workspace.
Through our research work, we found that the asymmetric configuration of the spherical manipulator maximizes the workspace when the motors are located at the articulation point of the robot leg support arms. At the same time, the parameter $\beta_1$ must be zero degrees to maximize the workspace. This allowed us to create a prototype robot in which we eliminated the use of lower links in legs in favor of a radiused rail along which the motors run. This allowed us to reduce the linear dimensions of the robot itself and gain on the stiffness of the structure.
The results obtained can be used to optimize the parameters of the parallel spherical manipulator in various industrial and scientific applications, as well as for further research of other types of parallel robots and manipulators.
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Computational algorithm for solving the nonlinear boundary-value problem of hydrogen permeability with dynamic boundary conditions and concentration-dependent diffusion coefficient
Computer Research and Modeling, 2024, v. 16, no. 5, pp. 1179-1193The article deals with the nonlinear boundary-value problem of hydrogen permeability corresponding to the following experiment. A membrane made of the target structural material heated to a sufficiently high temperature serves as the partition in the vacuum chamber. Degassing is performed in advance. A constant pressure of gaseous (molecular) hydrogen is built up at the inlet side. The penetrating flux is determined by mass-spectrometry in the vacuum maintained at the outlet side.
A linear model of dependence on concentration is adopted for the coefficient of dissolved atomic hydrogen diffusion in the bulk. The temperature dependence conforms to the Arrhenius law. The surface processes of dissolution and sorptiondesorption are taken into account in the form of nonlinear dynamic boundary conditions (differential equations for the dynamics of surface concentrations of atomic hydrogen). The characteristic mathematical feature of the boundary-value problem is that concentration time derivatives are included both in the diffusion equation and in the boundary conditions with quadratic nonlinearity. In terms of the general theory of functional differential equations, this leads to the so-called neutral type equations and requires a more complex mathematical apparatus. An iterative computational algorithm of second-(higher- )order accuracy is suggested for solving the corresponding nonlinear boundary-value problem based on explicit-implicit difference schemes. To avoid solving the nonlinear system of equations at every time step, we apply the explicit component of difference scheme to slower sub-processes.
The results of numerical modeling are presented to confirm the fitness of the model to experimental data. The degrees of impact of variations in hydrogen permeability parameters (“derivatives”) on the penetrating flux and the concentration distribution of H atoms through the sample thickness are determined. This knowledge is important, in particular, when designing protective structures against hydrogen embrittlement or membrane technologies for producing high-purity hydrogen. The computational algorithm enables using the model in the analysis of extreme regimes for structural materials (pressure drops, high temperatures, unsteady heating), identifying the limiting factors under specific operating conditions, and saving on costly experiments (especially in deuterium-tritium investigations).
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Deriving specifications of dependable systems
Computer Research and Modeling, 2024, v. 16, no. 7, pp. 1637-1650Although human skills are heavily involved in the Requirements Engineering process, in particular, in requirements elicitation, analysis and specification, still methodology and formalism play a determining role in providing clarity and enabling analysis. In this paper, we propose a method for deriving formal specifications, which are applicable to dependable software systems. First, we clarify what the method itself is. Computer science has a proliferation of languages and methods, but the difference between the two is not always clear. This is a conceptual contribution. Furthermore, we propose the idea of Layered Fault Tolerant Specification (LFTS). The principle consists in layering specifications in (at least) two different layers: one for normal behaviors and others (if more than one) for abnormal behaviors. Abnormal behaviors are described in terms of an Error Injector (EI), which represent a model of the expected erroneous interference coming from the environment. This structure has been inspired by the notion of an idealized Fault Tolerant component, but the combination of LFTS and EI using rely guarantee thinking to describe interference is our second contribution. The overall result is the definition of a method for the specification of systems that do not run in isolation but in the real, physical world. We propose an approach that is pragmatic to its target audience: techniques must scale and be usable by non-experts, if they are to make it into an industrial setting. This article is making tentative steps, but the recent trends in Software Engineering such as Microservices, smart and software-defined buildings, M2M micropayments and Devops are relevant fields continue the investigation concerning dependability and rely guarantee thinking.
Keywords: formal methods, dependability. -
Research on the achievability of a goal in a medical quest
Computer Research and Modeling, 2025, v. 17, no. 6, pp. 1149-1179The work presents an experimental study of the tree structure that occurs during a medical examination. At each meeting with a medical specialist, the patient receives a certain number of areas for consulting other specialists or for tests. A tree of directions arises, each branch of which the patient should pass. Depending on the branching of the tree, it can be as final — and in this case the examination can be completed — and endless when the patient’s goal cannot be achieved. In the work both experimentally and theoretically studied the critical properties of the transition of the system from the forest of the final trees to the forest endless, depending on the probabilistic characteristics of the tree.
For the description, a model is proposed in which a discrete function of the probability of the number of branches on the node repeats the dynamics of a continuous gaussian distribution. The characteristics of the distribution of the Gauss (mathematical expectation of $x_0$, the average quadratic deviation of $\sigma$) are model parameters. In the selected setting, the task refers to the problems of branching random processes (BRP) in the heterogeneous model of Galton – Watson.
Experimental study is carried out by numerical modeling on the final grilles. A phase diagram was built, the boundaries of areas of various phases are determined. A comparison was made with the phase diagram obtained from theoretical criteria for macrosystems, and an adequate correspondence was established. It is shown that on the final grilles the transition is blurry.
The description of the blurry phase transition was carried out using two approaches. In the first, standard approach, the transition is described using the so-called inclusion function, which makes the meaning of the share of one of the phases in the general set. It was established that such an approach in this system is ineffective, since the found position of the conditional boundary of the blurred transition is determined only by the size of the chosen experimental lattice and does not bear objective meaning.
The second, original approach is proposed, based on the introduction of an parameter of order equal to the reverse average tree height, and the analysis of its behavior. It was established that the dynamics of such an order parameter in the $\sigma = \text{const}$ section with very small differences has the type of distribution of Fermi – Dirac ($\sigma$ performs the same function as the temperature for the distribution of Fermi – Dirac, $x_0$ — energy function). An empirical expression has been selected for the order parameter, an analogue of the chemical potential is introduced and calculated, which makes sense of the characteristic scale of the order parameter — that is, the values of $x_0$, in which the order can be considered a disorder. This criterion is the basis for determining the boundary of the conditional transition in this approach. It was established that this boundary corresponds to the average height of a tree equal to two generations. Based on the found properties, recommendations for medical institutions are proposed to control the provision of limb of the path of patients.
The model discussed and its description using conditionally-infinite trees have applications to many hierarchical systems. These systems include: internet routing networks, bureaucratic networks, trade and logistics networks, citation networks, game strategies, population dynamics problems, and others.
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Numerical modeling of the occurrence of a stress peak during the reflection of a shock wave pulse from a granular porous medium
Computer Research and Modeling, 2026, v. 18, no. 2, pp. 359-375The study of elastic waves in porous media is relevant for mineral exploration, the use of porous screens for shock wave damping, and the study of the structure of the earth’s crust. The elastic properties of a porous medium, which can be judged by the propagation velocity of various types of waves, depend on the degree of consolidation of the porous medium. For example, bulk media (sand, glass beads, granular materials) have a low sound velocity (about 100 m/s); compaction of such media is accompanied by a slight increase in velocity, while their consolidation (sandstone, gas hydrate cementation) leads to a multiple increase in the acoustic wave velocity, on the order of 2000–3000 m/s. This paper theoretically investigates the dynamics of a wave pulse in a shock tube containing a layer of a bulk medium. Numerical modeling was performed under experimental conditions. A description of a shock tube experimental setup is provided. The setup consists of a high-pressure volume (HPV), a low-pressure volume (LPV), and a bulk medium section. A shock wave pulse (SWP) is generated by the rupture of a diaphragm between the HPV and LPV. The SWP dynamics are recorded by piezoelectric sensors located flush on the inside of the tube. In the shock tube, equipped with a bulk medium section, the wave experiences multiple reflections from the surface of the porous medium under study and the upper end of the tube. The reflected signals are used as probe pulses to study changes in the porous medium caused by repeated passages of the shock wave pulse, with a period of approximately 10 ms. A mathematical model is used that includes the equations of conservation of mass, momentum, and energy for the gas phase and solid particles with closure relations. The process is described for one-dimensional planar motion of the gas and dispersed phases. The numerical solution utilizes an approximation of the equations based on the control volume method. Numerical results have shown that the proposed model accurately describes, qualitatively and quantitatively, the occurrence of a sharp, short-term increase in the total voltage (peak) during repeated pulse passage through a layer of bulk material, as observed in experiments.
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Application of beta regression to the CD44 alternative splicing problem
Computer Research and Modeling, 2026, v. 18, no. 3, pp. 697-714Aberrant alternative splicing of the CD44 gene drives colorectal cancer progression and facilitates the emergence of cancer stem cells. Although biomedical research recognizes this transmembrane glycoprotein as a major catalyst of malignancy, deciphering its multi-isoform regulatory networks remains a complex analytical challenge. To address this knowledge gap, this study presents a machine learning framework designed to decode these biological mechanisms. The author constructed a neural network regressor based on beta regression to model bounded isoform proportions. This computational architecture jointly estimates both the mean and the precision parameters of the underlying probability distribution. Furthermore, the system employs elastic net regularization to perform quantitative feature selection from highdimensional molecular expression data.
The investigation evaluates the proposed framework using gene expression profiles from colorectal cancer patients. The primary objective involves identifying specific ribonucleic acid-binding proteins acting as regulatory splicing factors. The experimental design contrasts two distinct mathematical modeling strategies. The first configuration incorporates an independent ”one-vs-all” approach that treats each transcript variant as an isolated regression target. The second formulation utilizes a structured ”isoform tree” method that directly mirrors hierarchical exon inclusion relationships. Validation experiments on synthetically generated datasets confirmed the mathematical integrity of the network. The model recovered true distribution parameters with precision and exhibited no systematic bias. Comprehensive empirical comparisons subsequently demonstrated that the independent ”one-vs-all” layout consistently outperforms the hierarchical tree configuration in predictive stability and accuracy.
The computational analysis maps the regulatory landscape of the CD44 gene. The framework validates several established splicing factors while uncovering new candidate proteins, including ACO1, NUDT21, and AGO2. Based on these statistical associations, the paper introduces a biological hypothesis. This concept functionally connects intracellular iron metabolism via the ACO1 protein with the shifting balance of CD44 variants. These discoveries provide deeper insights into oncogenic splicing regulation. Ultimately, they highlight molecular targets for future therapeutic interventions aimed at suppressing the cancer stem cell phenotype.
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DNA conformational dynamics: approach to the physical mapping of genome
Computer Research and Modeling, 2010, v. 2, no. 4, pp. 419-428Views (last year): 2. Citations: 2 (RSCI).Recently we have developed a new method for studying DNA based on ultrasound - induced cleavage of DNA sugar-phosphate backbone. Relative cleavage rates of the phosphodiester bonds in all 16 dinucleotides have been determined. The increased amount of data sampling (of more than 20 000 nucleotides) made it also possible to obtain cleavage rates in all 256 possible tetranucleotides. These values quantitatively characterize sequence effects on conformational dynamics of DNA sugar phosphate backbone. Same type of DNA heterogeneity have been discovered and studied using its chemical cleavage induced by various chemical agents and DNAse I. The presence of essential heterogeneity in structural properties of DNA might be a key for physical mapping of the genomes, i.e. determining the structural profiles being responsible for DNA recognition by gene expression regulation machinery.
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Numerical solution of a two-dimensional quasi-static problem of thermoplasticity: residual thermal stress calculation for a multipass welding of heterogeneous steels
Computer Research and Modeling, 2012, v. 4, no. 2, pp. 345-356Views (last year): 4. Citations: 6 (RSCI).A two-dimensional mathematical model was developed for estimating the stresses in welded joints formed during multipass welding of multilayer steels. The basis of the model is the system of equations that includes the Lagrange variational equation of incremental plasticity theory and the variational equation of heat conduction, which expresses the principle of M. Biot. Variational-difference method was used to solve the problems of heat conductivity and calculation of the transient temperature field, and then at each time step – for the quasi-static problem of thermoplasticity. The numerical scheme is based on triangular meshes, which gives a more accuracy in describing the boundaries of structural elements as compared to rectangular grids.
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On the investigation of plasma turbulence by the analysis of the spectra
Computer Research and Modeling, 2012, v. 4, no. 4, pp. 793-802Views (last year): 2. Citations: 4 (RSCI).The article describes the examples of the analysis of the experimental data spectra for identifying typical structures of processes forming plasma turbulence. The method is based on the original algorithm which is close to the one-sample bootstrap. The base model for description of the fine structure of stochastic processes is finite local-scale normal mixtures. For finding the statistical estimates (maximum likelihood estimates) well known EM algorithm is used. The efficiency of the proposed research technique is demonstrated for a number of spectra’s set obtained in different modes of low-frequency plasma turbulence.
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The structure of site percolation models on three-dimensional square lattices
Computer Research and Modeling, 2013, v. 5, no. 4, pp. 607-622Views (last year): 8. Citations: 5 (RSCI).In this paper we consider the structure of site percolation models on three-dimensional square lattices with various shapes of (1,π)-neighborhood. For these models, are proposed iso- and anisotropic modifications of the invasion percolation algorithm with (1,0)- and (1,π)-neighborhoods. All the above algorithms are special cases of the anisotropic invasion percolation algorithm on the n-dimensional lattice with a (1,π)-neighborhood. This algorithm is the basis for the package SPSL, released under GNU GPL-3 using the free programming language R.
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