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Calculation of spatial distribution of differently oriented LEDs
Computer Research and Modeling, 2014, v. 6, no. 4, pp. 577-584Views (last year): 3. Citations: 2 (RSCI).New method for calculation of spatial light distribution of differently oriented LEDs is proposed. The main idea is combination of coordinate systems associated with these light sources. Unlike other conventional approaches, this method can be applied to the emitters with light distribution with arbitrary symmetry or without symmetry at all.
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The analysis of respiratory reactions of the person in the conditions of the changed gas environment on mathematical model
Computer Research and Modeling, 2017, v. 9, no. 2, pp. 281-296Views (last year): 5.The aim of the work was to study and develop methods of forecasting the dynamics of the human respiratory reactions, based on mathematical modeling. To achieve this goal have been set and solved the following tasks: developed and justified the overall structure and formalized description of the model Respiro-reflex system; built and implemented the algorithm in software models of gas exchange of the body; computational experiments and checking the adequacy of the model-based Lite-ture data and our own experimental studies.
In this embodiment, a new comprehensive model entered partial model modified version of physicochemical properties and blood acid-base balance. In developing the model as the basis of a formalized description was based on the concept of separation of physiologically-fi system of regulation on active and passive subsystems regulation. Development of the model was carried out in stages. Integrated model of gas exchange consisted of the following special models: basic biophysical models of gas exchange system; model physicochemical properties and blood acid-base balance; passive mechanisms of gas exchange model developed on the basis of mass balance equations Grodinza F.; chemical regulation model developed on the basis of a multifactor model D. Gray.
For a software implementation of the model, calculations were made in MatLab programming environment. To solve the equations of the method of Runge–Kutta–Fehlberga. It is assumed that the model will be presented in the form of a computer research program, which allows implements vat various hypotheses about the mechanism of the observed processes. Calculate the expected value of the basic indicators of gas exchange under giperkap Britain and hypoxia. The results of calculations as the nature of, and quantity is good enough co-agree with the data obtained in the studies on the testers. The audit on Adek-vatnost confirmed that the error calculation is within error of copper-to-biological experiments. The model can be used in the theoretical prediction of the dynamics of the respiratory reactions of the human body in a changed atmosphere.
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Numerical and analytical study of the motion of Maxwell’s pendulum
Computer Research and Modeling, 2024, v. 16, no. 1, pp. 123-136The article considers the problem of the stability of the vertical position of a Maxwell pendulum during its periodic up-down movements. Two types of transition movements are considered: “stop” — occurs when the body of the pendulum in its highest position on the string (during its “standard” upward movement) stops for a moment; “two-link pendulum” — occurs when the entire thread from the body of the pendulum is selected (the lowest position of the body on the thread during its “standard” downward movement), and the body is forced to rotate relative to the thread around the point of its attachment to the body. It is shown that for any values of the pendulum parameters, this position is unstable in the sense that oscillations of the thread around the vertical of finite amplitude occur in the system for arbitrarily small initial deviations. In addition, it has been established that no shock phenomena occur during the movement of the Maxwell pendulum, and the model of this pendulum itself, with the values of its parameters often used in the literature, is incorrect according to Hadamard. In this work, it is shown that the vertical position of the pendulum threads during the indicated oscillatory movements of the body along the threads for any non-degenerate values of the parameters of the Maxwell pendulum is always unstable in the above sense. Moreover, this instability is caused precisely by transitional movements of the 2nd type. In this work, it is further shown that no jumps in speeds or accelerations (due to which shocks or “jerks” in the tension of the threads can occur) do not occur during the indicated movements of the Maxwell pendulum model under consideration. In our opinion, the “jerks” observed in the experiments are due to other reasons, for example, the technical imperfection of the instruments on which the experiments were carried out.
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Mathematical model of respiratory regulation during hypoxia and hypercapnia
Computer Research and Modeling, 2017, v. 9, no. 2, pp. 297-310Views (last year): 16.Transport of respiratory gases by respiratory and circulatory systems is one of the most important processes associated with living conditions of the human body. Significant and/or long-term deviations of oxygen and carbon dioxide concentrations from the normal values in blood can be a reason of significant pathological changes with irreversible consequences: lack of oxygen (hypoxia and ischemic events), the change in the acidbase balance of blood (acidosis or alkalosis), and others. In the context of a changing external environment and internal conditions of the body the action of its regulatory systems aimed at maintaining homeostasis. One of the major mechanisms for maintaining concentrations (partial pressures) of oxygen and carbon dioxide in the blood at a normal level is the regulation of minute ventilation, respiratory rate and depth of respiration, which is caused by the activity of the central and peripheral regulators.
In this paper we propose a mathematical model of the regulation of pulmonary ventilation parameter. The model is used to calculate the minute ventilation adaptation during hypoxia and hypercapnia. The model is developed using a single-component model of the lungs, and biochemical equilibrium conditions of oxygen and carbon dioxide in the blood and the alveolar lung volume. A comparison with laboratory data is performed during hypoxia and hypercapnia. Analysis of the results shows that the model reproduces the dynamics of minute ventilation during hypercapnia with sufficient accuracy. Another result is that more accurate model of regulation of minute ventilation during hypoxia should be developed. The factors preventing from satisfactory accuracy are analysed in the final section.
Respiratory function is one of the main limiting factors of the organism during intense physical activities. Thus, it is important characteristic of high performance sport and extreme physical activity conditions. Therefore, the results of this study have significant application value in the field of mathematical modeling in sport. The considered conditions of hypoxia and hypercapnia are partly reproduce training at high altitude and at hypoxia conditions. The purpose of these conditions is to increase the level of hemoglobin in the blood of highly qualified athletes. These conditions are the only admitted by sport committees.
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On the boundaries of optimally designed elastoplastic structures
Computer Research and Modeling, 2017, v. 9, no. 3, pp. 503-515Views (last year): 8.This paper studies minimum volume elastoplastic bodies. One part of the boundary of every reviewed body is fixed to the same space points while stresses are set for the remaining part of the boundary surface (loaded surface). The shape of the loaded surface can change in space but the limit load factor calculated based on the assumption that the bodies are filled with elastoplastic medium must not be less than a fixed value. Besides, all varying bodies are supposed to have some type of a limited volume sample manifold inside of them.
The following problem has been set: what is the maximum number of cavities (or holes in a two-dimensional case) that a minimum volume body (plate) can have under the above limitations? It is established that in order to define a mathematically correct problem, two extra conditions have to be met: the areas of the holes must be bigger than the small constant while the total length of the internal hole contour lines within the optimum figure must be minimum among the varying bodies. Thus, unlike most articles on optimum design of elastoplastic structures where parametric analysis of acceptable solutions is done with the set topology, this paper looks for the topological parameter of the design connectivity.
The paper covers the case when the load limit factor for the sample manifold is quite large while the areas of acceptable holes in the varying plates are bigger than the small constant. The arguments are brought forward that prove the Maxwell and Michell beam system to be the optimum figure under these conditions. As an example, microphotographs of the standard biological bone tissues are presented. It is demonstrated that internal holes with large areas cannot be a part of the Michell system. At the same the Maxwell beam system can include holes with significant areas. The sufficient conditions are given for the hole formation within the solid plate of optimum volume. The results permit generalization for three-dimensional elastoplastic structures.
The paper concludes with the setting of mathematical problems arising from the new problem optimally designed elastoplastic systems.
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Current issues in computational modeling of thrombosis, fibrinolysis, and thrombolysis
Computer Research and Modeling, 2024, v. 16, no. 4, pp. 975-995Hemostasis system is one of the key body’s defense systems, which is presented in all the liquid tissues and especially important in blood. Hemostatic response is triggered as a result of the vessel injury. The interaction between specialized cells and humoral systems leads to the formation of the initial hemostatic clot, which stops bleeding. After that the slow process of clot dissolution occurs. The formation of hemostatic plug is a unique physiological process, because during several minutes the hemostatic system generates complex structures on a scale ranging from microns for microvessel injury or damaged endothelial cell-cell contacts, to centimeters for damaged systemic arteries. Hemostatic response depends on the numerous coordinated processes, which include platelet adhesion and aggregation, granule secretion, platelet shape change, modification of the chemical composition of the lipid bilayer, clot contraction, and formation of the fibrin mesh due to activation of blood coagulation cascade. Computer modeling is a powerful tool, which is used to study this complex system at different levels of organization. This includes study of intracellular signaling in platelets, modelling humoral systems of blood coagulation and fibrinolysis, and development of the multiscale models of thrombus growth. There are two key issues of the computer modeling in biology: absence of the adequate physico-mathematical description of the existing experimental data due to the complexity of the biological processes, and high computational complexity of the models, which doesn’t allow to use them to test physiologically relevant scenarios. Here we discuss some key unresolved problems in the field, as well as the current progress in experimental research of hemostasis and thrombosis. New findings lead to reevaluation of the existing concepts and development of the novel computer models. We focus on the arterial thrombosis, venous thrombosis, thrombosis in microcirculation and the problems of fibrinolysis and thrombolysis. We also briefly discuss basic types of the existing mathematical models, their computational complexity, and principal issues in simulation of thrombus growth in arteries.
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Cytokines as indicators of the state of the organism in infectious diseases. Experimental data analysis
Computer Research and Modeling, 2020, v. 12, no. 6, pp. 1409-1426When person`s diseases is result of bacterial infection, various characteristics of the organism are used for observation the course of the disease. Currently, one of these indicators is dynamics of cytokine concentrations are produced, mainly by cells of the immune system. There are many types of these low molecular weight proteins in human body and many species of animals. The study of cytokines is important for the interpretation of functional disorders of the body's immune system, assessment of the severity, monitoring the effectiveness of therapy, predicting of the course and outcome of treatment. Cytokine response of the body indicating characteristics of course of disease. For research regularities of such indication, experiments were conducted on laboratory mice. Experimental data are analyzed on the development of pneumonia and treatment with several drugs for bacterial infection of mice. As drugs used immunomodulatory drugs “Roncoleukin”, “Leikinferon” and “Tinrostim”. The data are presented by two types cytokines` concentration in lung tissue and animal blood. Multy-sided statistical ana non statistical analysis of the data allowed us to find common patterns of changes in the “cytokine profile” of the body and to link them with the properties of therapeutic preparations. The studies cytokine “Interleukin-10” (IL-10) and “Interferon Gamma” (IFN$\gamma$) in infected mice deviate from the normal level of infact animals indicating the development of the disease. Changes in cytokine concentrations in groups of treated mice are compared with those in a group of healthy (not infected) mice and a group of infected untreated mice. The comparison is made for groups of individuals, since the concentrations of cytokines are individual and differ significantly in different individuals. Under these conditions, only groups of individuals can indicate the regularities of the processes of the course of the disease. These groups of mice were being observed for two weeks. The dynamics of cytokine concentrations indicates characteristics of the disease course and efficiency of used therapeutic drugs. The effect of a medicinal product on organisms is monitored by the location of these groups of individuals in the space of cytokine concentrations. The Hausdorff distance between the sets of vectors of cytokine concentrations of individuals is used in this space. This is based on the Euclidean distance between the elements of these sets. It was found that the drug “Roncoleukin” and “Leukinferon” have a generally similar and different from the drug “Tinrostim” effect on the course of the disease.
Keywords: data processing, experiment, cytokine, immune system, pneumonia, statistics, approximation, Hausdorff distance. -
Numerical modeling of physical processes leading to the destruction of meteoroids in the Earth’s atmosphere
Computer Research and Modeling, 2022, v. 14, no. 4, pp. 835-851Within the framework of the actual problem of comet-asteroid danger, the physical processes causing the destruction and fragmentation of meteor bodies in the Earth’s atmosphere are numerically investigated. Based on the developed physicalmathematical models that determines the movements of space objects of natural origin in the atmosphere and their interaction with it, the fall of three, one of the largest and by some parameters unusual bolides in the history of meteoritics, are considered: Tunguska, Vitim and Chelyabinsk. Their singularity lies in the absence of any material meteorite remains and craters in the area of the alleged crash site for the first two bodies and the non-detection, as it is assumed, of the main mother body for the third body (due to the too small amount of mass of the fallen fragments compared to the estimated mass). The effect of aerodynamic loads and heat flows on these bodies are studied, which leads to intensive surface mass loss and possible mechanical destruction. The velocities of the studied celestial bodies and the change in their masses are determined from the modernized system of equations of the theory of meteoric physics. An important factor that is taken into account here is the variability of the meteorite mass entrainment parameter under the action of heat fluxes (radiation and convective) along the flight path. The process of fragmentation of meteoroids in this paper is considered within the framework of a progressive crushing model based on the statistical theory of strength, taking into account the influence of the scale factor on the ultimate strength of objects. The phenomena and effects arising at various kinematic and physical parameters of each of these bodies are revealed. In particular, the change in the ballistics of their flight in the denser layers of the atmosphere, consisting in the transition from the fall mode to the ascent mode. At the same time, the following scenarios of the event can be realized: 1) the return of the body back to outer space at its residual velocity greater than the second cosmic one; 2) the transition of the body to the orbit of the Earth satellite at a residual velocity greater than the first cosmic one; 3) at lower values of the residual velocity of the body, its return after some time to the fall mode and falling out at a considerable distance from the intended crash site. It is the implementation of one of these three scenarios of the event that explains, for example, the absence of material traces, including craters, in the case of the Tunguska bolide in the vicinity of the forest collapse. Assumptions about the possibility of such scenarios have been made earlier by other authors, and in this paper their implementation is confirmed by the results of numerical calculations.
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Influence of the simplest type of multiparticle interactions on the example of a lattice model of an adsorption layer
Computer Research and Modeling, 2024, v. 16, no. 2, pp. 445-458Self-organization of molecules on a solid surface is one of the promising directions for materials generation with unique magnetic, electrical, and optical properties. They can be widely used in fields such as electronics, optoelectronics, catalysis, and biology. However, the structure and physicochemical properties of adsorbed molecules are influenced by many parameters that must be taken into account when studying the self-organization of molecules. Therefore, the experimental study of such materials is expensive, and quite often it is difficult for various reasons. In such situations, it is advisable to use the mathematical modeling. One of the parameters in the considered adsorption systems is the multiparticle interaction, which is often not taken into account in simulations due to the complexity of the calculations. In this paper, we evaluated the influence of multiparticle interactions on the total energy of the system using the transfer-matrix method and the Materials Studio software package. The model of monocentric adsorption with nearest interactions on a triangular lattice was taken as the basis. Phase diagrams in the ground state were constructed and a number of thermodynamic characteristics (coverage $\theta$, entropy $S$, susceptibility $\xi$) were calculated at nonzero temperatures. The formation of all four ordered structures (lattice gas with $\theta=0$, $(\sqrt{3} \times \sqrt{3}) R30^{\circ}$ with $\theta = \frac{1}{3}$, $(\sqrt{3} \times \sqrt{3})R^{*}30^{\circ}$ with $\theta = \frac{2}{3}$ and densest phase with $\theta = 1$) in a system with only pairwise interactions, and the absence of the phase $(\sqrt{3}\times \sqrt{3}) R30^\circ$ when only three-body interactions are taken into account, were found. Using the example of an atomistic model of the trimesic acid adsorption layer by quantum mechanical methods we determined that in such a system the contribution of multiparticle interactions is 11.44% of the pair interactions energy. There are only quantitative differences at such values. The transition region from the $(\sqrt{3} \times \sqrt{3}) R^{*}30^\circ$ to the densest phase shifts to the right by 38.25% at $\frac{\varepsilon}{RT} = 4$ and to the left by 23.46% at $\frac{\varepsilon}{RT} = −2$.
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Method for prediction of aerodynamic characteristics of helicopter rotors based on edge-based schemes in code NOISEtte
Computer Research and Modeling, 2020, v. 12, no. 5, pp. 1097-1122The paper gives a detailed description of the developed methods for simulating the turbulent flow around a helicopter rotor and calculating its aerodynamic characteristics. The system of Reynolds-averaged Navier – Stokes equations for a viscous compressible gas closed by the Spalart –Allmaras turbulence model is used as the basic mathematical model. The model is formulated in a non-inertial rotating coordinate system associated with a rotor. To set the boundary conditions on the surface of the rotor, wall functions are used.
The numerical solution of the resulting system of differential equations is carried out on mixed-element unstructured grids including prismatic layers near the surface of a streamlined body.The numerical method is based on the original vertex-centered finite-volume EBR schemes. A feature of these schemes is their higher accuracy which is achieved through the use of edge-based reconstruction of variables on extended quasi-onedimensional stencils, and a moderate computational cost which allows for serial computations. The methods of Roe and Lax – Friedrichs are used as approximate Riemann solvers. The Roe method is corrected in the case of low Mach flows. When dealing with discontinuities or solutions with large gradients, a quasi-one-dimensional WENO scheme or local switching to a quasi-one-dimensional TVD-type reconstruction is used. The time integration is carried out according to the implicit three-layer second-order scheme with Newton linearization of the system of difference equations. To solve the system of linear equations, the stabilized conjugate gradient method is used.
The numerical methods are implemented as a part of the in-house code NOISEtte according to the two-level MPI–OpenMP parallel model, which allows high-performance computations on meshes consisting of hundreds of millions of nodes, while involving hundreds of thousands of CPU cores of modern supercomputers.
Based on the results of numerical simulation, the aerodynamic characteristics of the helicopter rotor are calculated, namely, trust, torque and their dimensionless coefficients.
Validation of the developed technique is carried out by simulating the turbulent flow around the Caradonna – Tung two-blade rotor and the KNRTU-KAI four-blade model rotor in hover mode mode, tail rotor in duct, and rigid main rotor in oblique flow. The numerical results are compared with the available experimental data.
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