Most cited papers (RSCI)

411. Fomin A.A., Fomina L.N.
     On the convergence of the implicit iterative line-by-line recurrence method for solving difference elliptical equations
     Computer Research and Modeling, 2017, v. 9, no. 6, pp. 857-880

     In the article a theory of the implicit iterative line-by-line recurrence method for solving the systems of finite-difference equations which arise as a result of approximation of the two-dimensional elliptic differential equations on a regular grid is stated. On the one hand, the high effectiveness of the method has confirmed in practice. Some complex test problems, as well as several problems of fluid flow and heat transfer of a viscous incompressible liquid, have solved with its use. On the other hand, the theoretical provisions that explain the high convergence rate of the method and its stability are not yet presented in the literature. This fact is the reason for the present investigation. In the paper, the procedure of equivalent and approximate transformations of the initial system of linear algebraic equations (SLAE) is described in detail. The transformations are presented in a matrix-vector form, as well as in the form of the computational formulas of the method. The key points of the transformations are illustrated by schemes of changing of the difference stencils that correspond to the transformed equations. The canonical form of the method is the goal of the transformation procedure. The correctness of the method follows from the canonical form in the case of the solution convergence. The estimation of norms of the matrix operators is carried out on the basis of analysis of structures and element sets of the corresponding matrices. As a result, the convergence of the method is proved for arbitrary initial vectors of the solution of the problem.

     The norm of the transition matrix operator is estimated in the special case of weak restrictions on a desired solution. It is shown, that the value of this norm decreases proportionally to the second power (or third degree, it depends on the version of the method) of the grid step of the problem solution area in the case of transition matrix order increases. The necessary condition of the method stability is obtained by means of simple estimates of the vector of an approximate solution. Also, the estimate in order of magnitude of the optimum iterative compensation parameter is given. Theoretical conclusions are illustrated by using the solutions of the test problems. It is shown, that the number of the iterations required to achieve a given accuracy of the solution decreases if a grid size of the solution area increases. It is also demonstrated that if the weak restrictions on solution are violated in the choice of the initial approximation of the solution, then the rate of convergence of the method decreases essentially in full accordance with the deduced theoretical results.

     Keywords: system of linear algebraic equations, iterative method, convergence of method.
     Views (last year): 15. Citations: 1 (RSCI).
412. Kutovskiy N.A., Nechaevskiy A.V., Ososkov G.A., Pryahina D.I., Trofimov V.V.
     Simulation of interprocessor interactions for MPI-applications in the cloud infrastructure
     Computer Research and Modeling, 2017, v. 9, no. 6, pp. 955-963

     А new cloud center of parallel computing is to be created in the Laboratory of Information Technologies (LIT) of the Joint Institute for Nuclear Research JINR) what is expected to improve significantly the efficiency of numerical calculations and expedite the receipt of new physically meaningful results due to the more rational use of computing resources. To optimize a scheme of parallel computations at a cloud environment it is necessary to test this scheme for various combinations of equipment parameters (processor speed and numbers, throughput оf а communication network etc). As a test problem, the parallel MPI algorithm for calculations of the long Josephson junctions (LDJ) is chosen. Problems of evaluating the impact of abovementioned factors of computing mean on the computing speed of the test problem are solved by simulation with the simulation program SyMSim developed in LIT.

     The simulation of the LDJ calculations in the cloud environment enable users without a series of test to find the optimal number of CPUs with a certain type of network run the calculations in a real computer environment. This can save significant computational time in countable resources. The main parameters of the model were obtained from the results of the computational experiment conducted on a special cloud-based testbed. Computational experiments showed that the pure computation time decreases in inverse proportion to the number of processors, but depends significantly on network bandwidth. Comparison of results obtained empirically with the results of simulation showed that the simulation model correctly simulates the parallel calculations performed using the MPI-technology. Besides it confirms our recommendation: for fast calculations of this type it is needed to increase both, — the number of CPUs and the network throughput at the same time. The simulation results allow also to invent an empirical analytical formula expressing the dependence of calculation time by the number of processors for a fixed system configuration. The obtained formula can be applied to other similar studies, but requires additional tests to determine the values of variables.

     Keywords: MPI, parallel computing, cloud computing, simulation.
     Views (last year): 10. Citations: 1 (RSCI).
413. Belotelov N.V., Apal’kova T.G., Mamkin V.V., Kurbatova Y.A., Olchev A.V.
     Some relationships between thermodynamic characteristics and water vapor and carbon dioxide fluxes in a recently clear-cut area
     Computer Research and Modeling, 2017, v. 9, no. 6, pp. 965-980

     The temporal variability of exergy of short-wave and long-wave radiation and its relationships with sensible heat, water vapor (H₂O) and carbon dioxide (CO₂) fluxes on a recently clear-cut area in a mixed coniferous and small-leaved forest in the Tver region is discussed. On the basis of the analysis of radiation and exergy efficiency coefficients suggested by Yu.M. Svirezhev it was shown that during the first eight months after clearcutting the forest ecosystem functions as a "heat engine" i.e. the processes of energy dissipation dominated over processes of biomass production. To validate the findings the statistical analysis of temporary variability of meteorological parameters, as well as, daily fluxes of sensible heat, H₂O and CO₂ was provided using the trigonometrical polynomials. The statistical models that are linearly depended on an exergy of short-wave and long-wave radiation were obtained for mean daily values of CO₂ fluxes, gross primary production of regenerated vegetation and sensible heat fluxes. The analysis of these dependences is also confirmed the results obtained from processing the radiation and exergy efficiency coefficients. The splitting the time series into separate time intervals, e.g. “spring–summer” and “summer–autumn”, allowed revealing that the statistically significant relationships between atmospheric fluxes and exergy were amplified in summer months as the clear-cut area was overgrown by grassy and young woody vegetation. The analysis of linear relationships between time-series of latent heat fluxes and exergy showed their statistical insignificance. The linear relationships between latent heat fluxes and temperature were in turn statistically significant. The air temperature was a key factor improving the accuracy of the models, whereas effect of exergy was insignificant. The results indicated that at the time of active vegetation regeneration within the clear-cut area the seasonal variability of surface evaporation is mainly governed by temperature variation.

     Keywords: clear-cut, thermodynamic characteristics, exergy, short-wave radiation, long-wave emission, time series, sensible heat water vapor and carbon dioxide fluxes.
     Views (last year): 15. Citations: 1 (RSCI).
414. Leonov A.V., Kоltovskaya Е.V., Chicherina О.V.
     Biohydrochemical portrait of the White Sea
     Computer Research and Modeling, 2018, v. 10, no. 1, pp. 125-160

     The biohydrochemical portrait of the White Sea is constructed on the CNPSi-model calculations based on long-term mean annual observations (average monthly hydrometeorological, hydrochemical and hydrobiological parameters of the marine environment) as well as on updated information on the nutrient input to the sea with the runoff of the main river tributaries (Niva, Onega, Northern Dvina, Mezen, Kem, Keret). Parameters of the marine environment are temperature, light, transparency, and biogenic load. Ecological characteristics of the sea “portrait” were calculated for nine marine areas (Kandalaksha, Onega, Dvinsky, Mezensky Bays, Solovetsky Islands, Basin, Gorlot, Voronka, Chupa Bay), these are: the concentration changes of organic and mineral compounds of biogenic elements (C, N, P, Si), the biomass of organisms of the lower trophic level (heterotrophic bacteria, diatomic phytoplankton, herbivorous and predatory zooplankton) and other ones (rates of substance concentration and organism biomass changes, internal and external substance flows, balances of individual substances and nutrients as a whole). Parameters of the marine environment state (water temperature, ratio of mineral fractions N < P) and dominant diatom phytoplankton in the sea (abundance, production, biomass, chlorophyll content a) were calculated and compared with the results of individual surveys (for 1972–1991 and 2007–2012) of the White Sea water areas. The methods for estimating the values of these parameters from observations and calculations differ, however, the calculated values of the phytoplankton state are comparable with the measurements and are similar to the data given in the literature. Therefore, according to the literature data, the annual production of diatoms in the White Sea is estimated at 1.5–3 million tons C (at a vegetation period of 180 days), and according to calculations it is ~2 and 3.5 million tons C for vegetation period of 150 and 180 days respectively.

     Keywords: White Sea ecosystem, nutrients, heterotrophic bacterioplankton, diatom phytoplankton, herbivorous and predatory zooplankton, detritus, trophic chain, CNPSi-model of nutrient biotransformation, ecological portrait of the White Sea, the comparison of the observed and calculated parameters of diatoms (abundance, products, biomass, chlorophyll a).
     Views (last year): 15. Citations: 1 (RSCI).
415. Gasnikov A.V., Kovalev D.A.
     A hypothesis about the rate of global convergence for optimal methods (Newton’s type) in smooth convex optimization
     Computer Research and Modeling, 2018, v. 10, no. 3, pp. 305-314

     In this paper we discuss lower bounds for convergence of convex optimization methods of high order and attainability of this bounds. We formulate a hypothesis that covers all the cases. It is noticeable that we provide this statement without a proof. Newton method is the most famous method that uses gradient and Hessian of optimized function. However, it converges locally even for strongly convex functions. Global convergence can be achieved with cubic regularization of Newton method [Nesterov, Polyak, 2006], whose iteration cost is comparable with iteration cost of Newton method and is equivalent to inversion of Hessian of optimized function. Yu.Nesterov proposed accelerated variant of Newton method with cubic regularization in 2008 [Nesterov, 2008]. R.Monteiro and B. Svaiter managed to improve global convergence of cubic regularized method in 2013 [Monteiro, Svaiter, 2013]. Y.Arjevani, O. Shamir and R. Shiff showed that convergence bound of Monteiro and Svaiter is optimal (cannot be improved by more than logarithmic factor with any second order method) in 2017 [Arjevani et al., 2017]. They also managed to find bounds for convex optimization methods of p-th order for $p ≥ 2$. However, they got bounds only for first and second order methods for strongly convex functions. In 2018 Yu.Nesterov proposed third order convex optimization methods with rate of convergence that is close to this lower bounds and with similar to Newton method cost of iteration [Nesterov, 2018]. Consequently, it was showed that high order methods can be practical. In this paper we formulate lower bounds for p-th order methods for $p ≥ 3$ for strongly convex unconstrained optimization problems. This paper can be viewed as a little survey of state of the art of high order optimization methods.

     Keywords: Newton method, Hesse matrix, lower bounds, Chebyshev’s type methods, superliner rate of convergence.
     Views (last year): 21. Citations: 1 (RSCI).
416. Shleymovich M.P., Dagaeva M.V., Katasev A.S., Lyasheva S.A., Medvedev M.V.
     The analysis of images in control systems of unmanned automobiles on the base of energy features model
     Computer Research and Modeling, 2018, v. 10, no. 3, pp. 369-376

     The article shows the relevance of research work in the field of creating control systems for unmanned vehicles based on computer vision technologies. Computer vision tools are used to solve a large number of different tasks, including to determine the location of the car, detect obstacles, determine a suitable parking space. These tasks are resource intensive and have to be performed in real time. Therefore, it is important to develop effective models, methods and tools that ensure the achievement of the required time and accuracy for use in unmanned vehicle control systems. In this case, the choice of the image representation model is important. In this paper, we consider a model based on the wavelet transform, which makes it possible to form features characterizing the energy estimates of the image points and reflecting their significance from the point of view of the contribution to the overall image energy. To form a model of energy characteristics, a procedure is performed based on taking into account the dependencies between the wavelet coefficients of various levels and the application of heuristic adjustment factors for strengthening or weakening the influence of boundary and interior points. On the basis of the proposed model, it is possible to construct descriptions of images their characteristic features for isolating and analyzing, including for isolating contours, regions, and singular points. The effectiveness of the proposed approach to image analysis is due to the fact that the objects in question, such as road signs, road markings or car numbers that need to be detected and identified, are characterized by the relevant features. In addition, the use of wavelet transforms allows to perform the same basic operations to solve a set of tasks in onboard unmanned vehicle systems, including for tasks of primary processing, segmentation, description, recognition and compression of images. The such unified approach application will allow to reduce the time for performing all procedures and to reduce the requirements for computing resources of the on-board system of an unmanned vehicle.

     Keywords: unmanned automobile, control system, computer vision, image processing and analysis, wavelet transform, model of energy features of image.
     Views (last year): 31. Citations: 1 (RSCI).
417. Matyushkin I.V., Zapletina M.A.
     Computer research of the holomorphic dynamics of exponential and linear-exponential maps
     Computer Research and Modeling, 2018, v. 10, no. 4, pp. 383-405

     The work belongs to the direction of experimental mathematics, which investigates the properties of mathematical objects by the computing facilities of a computer. The base is an exponential map, its topological properties (Cantor's bouquets) differ from properties of polynomial and rational complex-valued functions. The subject of the study are the character and features of the Fatou and Julia sets, as well as the equilibrium points and orbits of the zero of three iterated complex-valued mappings: $f:z \to (1+ \mu) \exp (iz)$, $g : z \to \big(1+ \mu |z - z^*|\big) \exp (iz)$, $h : z \to \big(1+ \mu (z - z^* )\big) \exp (iz)$, with $z,\mu \in \mathbb{C}$, $z^* : \exp (iz^*) = z^*$. For a quasilinear map g having no analyticity characteristic, two bifurcation transitions were discovered: the creation of a new equilibrium point (for which the critical value of the linear parameter was found and the bifurcation consists of “fork” type and “saddle”-node transition) and the transition to the radical transformation of the Fatou set. A nontrivial character of convergence to a fixed point is revealed, which is associated with the appearance of “valleys” on the graph of convergence rates. For two other maps, the monoperiodicity of regimes is significant, the phenomenon of “period doubling” is noted (in one case along the path $39\to 3$, in the other along the path $17\to 2$), and the coincidence of the period multiplicity and the number of sleeves of the Julia spiral in a neighborhood of a fixed point is found. A rich illustrative material, numerical results of experiments and summary tables reflecting the parametric dependence of maps are given. Some questions are formulated in the paper for further research using traditional mathematics methods.

     Keywords: experimental mathematics, bifurcation, fractal, holomorphic dynamics, complex maps, nonlinear dynamics, Julia set, Fatou set, complex-valued exponent.
     Views (last year): 51. Citations: 1 (RSCI).
418. Koroleva M.R., Mishenkova O.V., Raeder T., Tenenev V.A., Chernova A.A.
     Numerical simulation of the process of activation of the safety valve
     Computer Research and Modeling, 2018, v. 10, no. 4, pp. 495-509

     The conjugate problem of disk movement into gas-filled volume of the spring-type safety valve is solved. The questions of determining the physically correct value of the disk initial lift are considered. The review of existing approaches and methods for solving of such type problems is conducted. The formulation of the problem about the valve actuation when the vessel pressure rises and the mathematical model of the actuation processes are given. A special attention to the binding of physical subtasks is paid. Used methods, numerical schemes and algorithms are described. The mathematical modeling is performed on basе the fundamental system of differential equations for viscous gas movement with the equation for displacement of disk valve. The solution of this problem in the axe symmetric statement is carried out numerically using the finite volume method. The results obtained by the viscous and inviscid models are compared. In an inviscid formulation this problem is solved using the Godunov scheme, and in a viscous formulation is solved using the Kurganov – Tadmor method. The dependence of the disk displacement on time was obtained and compared with the experimental data. The pressure distribution on the disk surface, velocity profiles in the cross sections of the gap for different disk heights are given. It is shown that a value of initial drive lift it does not affect on the gas flow and valve movement part dynamic. It can significantly reduce the calculation time of the full cycle of valve work. Immediate isotahs for various elevations of the disk are presented. The comparison of jet flow over critical section is given. The data carried out by two numerical experiments are well correlated with each other. So, the inviscid model can be applied to the numerical modeling of the safety valve dynamic.

     Keywords: mathematical modeling, safety valve, slide valve movement, viscous gas, finite volume method, Kurganov–Tadmor scheme, Godunov scheme.
     Views (last year): 34. Citations: 1 (RSCI).
419. Usanov M.S., Kulberg N.S., Yakovleva T.V., Morozov S.P.
     Determination of CT dose by means of noise analysis
     Computer Research and Modeling, 2018, v. 10, no. 4, pp. 525-533

     The article deals with the process of creating an effective algorithm for determining the amount of emitted quanta from an X-ray tube in computer tomography (CT) studies. An analysis of domestic and foreign literature showed that most of the work in the field of radiometry and radiography takes the tabulated values of X-ray absorption coefficients into account, while individual dose factors are not taken into account at all since many studies are lacking the Dose Report. Instead, an average value is used to simplify the calculation of statistics. In this regard, it was decided to develop a method to detect the amount of ionizing quanta by analyzing the noise of CT data. As the basis of the algorithm, we used Poisson and Gauss distribution mathematical model of owns’ design of logarithmic value. The resulting mathematical model was tested on the CT data of a calibration phantom consisting of three plastic cylinders filled with water, the X-ray absorption coefficient of which is known from the table values. The data were obtained from several CT devices from different manufacturers (Siemens, Toshiba, GE, Phillips). The developed algorithm made it possible to calculate the number of emitted X-ray quanta per unit time. These data, taking into account the noise level and the radiuses of the cylinders, were converted to X-ray absorption values, after which a comparison was made with tabulated values. As a result of this operation, the algorithm used with CT data of various configurations, experimental data were obtained, consistent with the theoretical part and the mathematical model. The results showed good accuracy of the algorithm and mathematical apparatus, which shows reliability of the obtained data. This mathematical model is already used in the noise reduction program of the CT of own design, where it participates as a method of creating a dynamic threshold of noise reduction. At the moment, the algorithm is being processed to work with real data from computer tomography of patients.

     Keywords: computed tomography, radiation dose, CT noise level, X-ray attenuation coefficient.
     Views (last year): 23. Citations: 1 (RSCI).
420. Yakushevich L.V., Balashova V.N., Zakiryanov F.K.
     Features of the DNA kink motion in the asynchronous switching on and off of the constant and periodic fields
     Computer Research and Modeling, 2018, v. 10, no. 4, pp. 545-558

     Investigation of the influence of external fields on living systems is one of the most interesting and rapidly developing areas of modern biophysics. However, the mechanisms of such an impact are still not entirely clear. One approach to the study of this issue is associated with modeling the interaction of external fields with internal mobility of biological objects. In this paper, this approach is used to study the effect of external fields on the motion of local conformational distortions — kinks, in the DNA molecule. Realizing and taking into account that on the whole this task is closely connected with the problem of the mechanisms of regulation of vital processes of cells and cellular systems, we set the problem — to investigate the physical mechanisms regulating the motion of kinks and also to answer the question whether permanent and periodic fields can play the role of regulators of this movement. The paper considers the most general case, when constant and periodic fields are switching on and off asynchronously. Three variants of asynchronous switching on/off are studied in detail. In the first variant, the time intervals (or diapasons) of the actions of the constant and periodic fields do not overlap, in the second — overlap, and in the third — the intervals are putting in each other. The calculations were performed for the sequence of plasmid pTTQ18. The kink motion was modeled by the McLaughlin–Scott equation, and the coefficients of the equation were calculated in a quasi-homogeneous approximation. Numerical experiments showed that constant and periodic fields exert a significant influence on the character of the kink motion and regulate it. So the switching on of a constant field leads to a rapid increase of the kink velocity and to the establishment of a stationary velocity of motion, and the switching on of a periodic field leads to the steady oscillations of the kink with the frequency of the external periodic field. It is shown that the behavior of the kink depends on the mutual arrangement of the diapasons of the action of the external fields. As it turned out, events occurring in one of the two diapasons can affect the events in the other diapason, even when the diapasons are sufficiently far apart. It is shown that the overlapping of the diapasons of action of the constant and periodic fields leads to a significant increase in the path traversed by the kink to a complete stop. Maximal growth of the path is observed when one diapason is putting in each other. In conclusion, the question of how the obtained model results could be related to the most important task of biology — the problem of the mechanisms of regulation of the processes of vital activity of cells and cellular systems is discussed.

     Keywords: McLaughlin–Scott equation, DNA kinks, external field effect, asynchronous switching on/off.
     Views (last year): 29. Citations: 1 (RSCI).

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