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Implicit algorithm for solving equations of motion of incompressible fluid
Computer Research and Modeling, 2023, v. 15, no. 4, pp. 1009-1023A large number of methods have been developed to solve the Navier – Stokes equations in the case of incompressible flows, the most popular of which are methods with velocity correction by the SIMPLE algorithm and its analogue — the method of splitting by physical variables. These methods, developed more than 40 years ago, were used to solve rather simple problems — simulating both stationary flows and non-stationary flows, in which the boundaries of the calculation domain were stationary. At present, the problems of computational fluid dynamics have become significantly more complicated. CFD problems are involving the motion of bodies in the computational domain, the motion of contact boundaries, cavitation and tasks with dynamic local adaptation of the computational mesh. In this case the computational mesh changes resulting in violation of the velocity divergence condition on it. Since divergent velocities are used not only for Navier – Stokes equations, but also for all other equations of the mathematical model of fluid motion — turbulence, mass transfer and energy conservation models, violation of this condition leads to numerical errors and, often, to undivergence of the computational algorithm.
This article presents an implicit method of splitting by physical variables that uses divergent velocities from a given time step to solve the incompressible Navier – Stokes equations. The method is developed to simulate flows in the case of movable and contact boundaries treated in the Euler paradigm. The method allows to perform computations with the integration step exceeding the explicit time step by orders of magnitude (Courant – Friedrichs – Levy number $CFL\gg1$). This article presents a variant of the method for incompressible flows. A variant of the method that allows to calculate the motion of liquid and gas at any Mach numbers will be published shortly. The method for fully compressible flows is implemented in the software package FlowVision.
Numerical simulating classical fluid flow around circular cylinder at low Reynolds numbers ($50 < Re < 140$), when laminar flow is unsteady and the Karman vortex street is formed, are presented in the article. Good agreement of calculations with the experimental data published in the classical works of Van Dyke and Taneda is demonstrated.
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Pattern formation of a three-species predator – prey model with prey-taxis and omnivorous predator
Computer Research and Modeling, 2023, v. 15, no. 6, pp. 1617-1634The spatiotemporal dynamics of a three-component model for food web is considered. The model describes the interactions among resource, prey and predator that consumes both species. In a previous work, the author analyzed the model without taking into account spatial heterogeneity. This study continues the model study of the community considering the diffusion of individuals, as well as directed movements of the predator. It is assumed that the predator responds to the spatial change in the resource and prey density by occupying areas where species density is higher or avoiding them. Directed predator movement is described by the advection term, where velocity is proportional to the gradient of resource and prey density. The system is considered on a one-dimensional domain with zero-flux conditions as boundary ones. The spatiotemporal dynamics produced by model is determined by the system stability in the vicinity of stationary homogeneous state with respect to small inhomogeneous perturbations. The paper analyzes the possibility of wave instability leading to the emergence of autowaves and Turing instability, as a result of which stationary patterns are formed. Sufficient conditions for the existence of both types of instability are obtained. The influence of local kinetic parameters on the spatial structure formation was analyzed. It was shown that only Turing instability is possible when taxis on the resource is positive, but with a negative taxis, both types of instability are possible. The numerical solution of the system was found by using method of lines (MOL) with the numerical integration of ODE system by means of splitting techniques. The spatiotemporal dynamics of the system is presented in several variants, realizing one of the instability types. In the case of a positive taxis on the prey, both autowave and stationary structures are formed in smaller regions, with an increase in the region size, Turing structures are not formed. For negative taxis on the prey, stationary patterns is observed in both regions, while periodic structures appear only in larger areas.
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Simulation of traffic flows based on the quasi-gasdynamic approach and the cellular automata theory using supercomputers
Computer Research and Modeling, 2024, v. 16, no. 1, pp. 175-194The purpose of the study is to simulate the dynamics of traffic flows on city road networks as well as to systematize the current state of affairs in this area. The introduction states that the development of intelligent transportation systems as an integral part of modern transportation technologies is coming to the fore. The core of these systems contain adequate mathematical models that allow to simulate traffic as close to reality as possible. The necessity of using supercomputers due to the large amount of calculations is also noted, therefore, the creation of special parallel algorithms is needed. The beginning of the article is devoted to the up-to-date classification of traffic flow models and characterization of each class, including their distinctive features and relevant examples with links. Further, the main focus of the article is shifted towards the development of macroscopic and microscopic models, created by the authors, and determination of the place of these models in the aforementioned classification. The macroscopic model is based on the continuum approach and uses the ideology of quasi-gasdynamic systems of equations. Its advantages are indicated in comparison with existing models of this class. The model is presented both in one-dimensional and two-dimensional versions. The both versions feature the ability to study multi-lane traffic. In the two-dimensional version it is made possible by introduction of the concept of “lateral” velocity, i. e., the speed of changing lanes. The latter version allows for carrying out calculations in the computational domain which corresponds to the actual geometry of the road. The section also presents the test results of modeling vehicle dynamics on a road fragment with the local widening and on a road fragment with traffic lights, including several variants of traffic light regimes. In the first case, the calculations allow to draw interesting conclusions about the impact of a road widening on a road capacity as a whole, and in the second case — to select the optimal regime configuration to obtain the “green wave” effect. The microscopic model is based on the cellular automata theory and the single-lane Nagel – Schreckenberg model and is generalized for the multi-lane case by the authors of the article. The model implements various behavioral strategies of drivers. Test computations for the real transport network section in Moscow city center are presented. To achieve an adequate representation of vehicles moving through the network according to road traffic regulations the authors implemented special algorithms adapted for parallel computing. Test calculations were performed on the K-100 supercomputer installed in the Centre of Collective Usage of KIAM RAS.
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Numerical study of the Holstein model in different thermostats
Computer Research and Modeling, 2024, v. 16, no. 2, pp. 489-502Based on the Holstein Hamiltonian, the dynamics of the charge introduced into the molecular chain of sites was modeled at different temperatures. In the calculation, the temperature of the chain is set by the initial data ¡ª random Gaussian distributions of velocities and site displacements. Various options for the initial charge density distribution are considered. Long-term calculations show that the system moves to fluctuations near a new equilibrium state. For the same initial velocities and displacements, the average kinetic energy, and, accordingly, the temperature of the T chain, varies depending on the initial distribution of the charge density: it decreases when a polaron is introduced into the chain, or increases if at the initial moment the electronic part of the energy is maximum. A comparison is made with the results obtained previously in the model with a Langevin thermostat. In both cases, the existence of a polaron is determined by the thermal energy of the entire chain.
According to the simulation results, the transition from the polaron mode to the delocalized state occurs in the same range of thermal energy values of a chain of $N$ sites ~ $NT$ for both thermostat options, with an additional adjustment: for the Hamiltonian system the temperature does not correspond to the initially set one, but is determined after long-term calculations from the average kinetic energy of the chain.
In the polaron region, the use of different methods for simulating temperature leads to a number of significant differences in the dynamics of the system. In the region of the delocalized state of charge, for high temperatures, the results averaged over a set of trajectories in a system with a random force and the results averaged over time for a Hamiltonian system are close, which does not contradict the ergodic hypothesis. From a practical point of view, for large temperatures T ≈ 300 K, when simulating charge transfer in homogeneous chains, any of these options for setting the thermostat can be used.
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Changepoint detection in biometric data: retrospective nonparametric segmentation methods based on dynamic programming and sliding windows
Computer Research and Modeling, 2024, v. 16, no. 5, pp. 1295-1321This paper is dedicated to the analysis of medical and biological data obtained through locomotor training and testing of astronauts conducted both on Earth and during spaceflight. These experiments can be described as the astronaut’s movement on a treadmill according to a predefined regimen in various speed modes. During these modes, not only the speed is recorded but also a range of parameters, including heart rate, ground reaction force, and others, are collected. In order to analyze the dynamics of the astronaut’s condition over an extended period, it is necessary to perform a qualitative segmentation of their movement modes to independently assess the target metrics. This task becomes particularly relevant in the development of an autonomous life support system for astronauts that operates without direct supervision from Earth. The segmentation of target data is complicated by the presence of various anomalies, such as deviations from the predefined regimen, arbitrary and varying duration of mode transitions, hardware failures, and other factors. The paper includes a detailed review of several contemporary retrospective (offline) nonparametric methods for detecting multiple changepoints, which refer to sudden changes in the properties of the observed time series occurring at unknown moments. Special attention is given to algorithms and statistical measures that determine the homogeneity of the data and methods for detecting change points. The paper considers approaches based on dynamic programming and sliding window methods. The second part of the paper focuses on the numerical modeling of these methods using characteristic examples of experimental data, including both “simple” and “complex” speed profiles of movement. The analysis conducted allowed us to identify the preferred methods, which will be further evaluated on the complete dataset. Preference is given to methods that ensure the closeness of the markup to a reference one, potentially allow the detection of both boundaries of transient processes, as well as are robust relative to internal parameters.
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Modification of Chanter–Thornley mushroom growth model and its analysis by means of multiapproach simulation
Computer Research and Modeling, 2015, v. 7, no. 2, pp. 375-385Views (last year): 3. Citations: 3 (RSCI).Classical Chanter–Thornley model of mushroom growth has been modified and implemented in AnyLogic simulation environment by means of system dynamics, discrete-event and agent-based approaches. A numerical case study of the model is presented and the problem of optimum age at harvest, providing the maximum integral yield for all fruiting “waves” is solved.
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Forecasting the global temperature increase for the XXI century by means of a simple statistical model
Computer Research and Modeling, 2016, v. 8, no. 2, pp. 379-390Views (last year): 1.A simple statistical model is developed for the dynamics of the mean global annual temperature. The model combines the logarithmic effect of carbon dioxide concentration increase and the input by climatic cycles. Model parameters are determined from data of instrumental observations for 1850–2010. The model confirms the presence of climatic cycles with the period of 10.5 and 68.8 years in the global temperature dynamics. The trajectories of the global temperature changes for the XXI century are obtained under the scenarios of carbon dioxide concentration changes from the 5th IPCC Assessment Report. The comparison revealed that the global temperature trajectories from the Report are 0.9–1.8 °C above those obtained in the model.
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Application of correlation adaptometry technique to sports and biomedical research
Computer Research and Modeling, 2017, v. 9, no. 2, pp. 345-354Views (last year): 10.The paper outlines the approaches to mathematical modeling correlation adaptometry techniques widely used in biology and medicine. The analysis is based on models employed in descriptions of structured biological systems. It is assumed that the distribution density of the biological population numbers satisfies the equation of Kolmogorov-Fokker-Planck. Using this technique evaluated the effectiveness of treatment of patients with obesity. All patients depending on the obesity degree and the comorbidity nature were divided into three groups. Shows a decrease in weight of the correlation graph computed from the measured in the patients of the indicators that characterizes the effectiveness of the treatment for all studied groups. This technique was also used to assess the intensity of the training loads in academic rowing three age groups. It was shown that with the highest voltage worked with athletes for youth group. Also, using the technique of correlation adaptometry evaluated the effectiveness of the treatment of hormone replacement therapy in women. All the patients depending on the assigned drug were divided into four groups. In the standard analysis of the dynamics of mean values of indicators, it was shown that in the course of the treatment were observed normalization of the averages for all groups of patients. However, using the technique of correlation adaptometry it was found that during the first six months the weight of the correlation graph was decreasing and during the second six months the weight increased for all study groups. This indicates the excessive length of the annual course of hormone replacement therapy and the practicality of transition to a semiannual rate.
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On the using the differential schemes to transport equation with drain in grid modeling
Computer Research and Modeling, 2020, v. 12, no. 5, pp. 1149-1164Modern power transportation systems are the complex engineering systems. Such systems include both point facilities (power producers, consumers, transformer substations, etc.) and the distributed elements (f.e. power lines). Such structures are presented in the form of the graphs with different types of nodes under creating the mathematical models. It is necessary to solve the system of partial differential equations of the hyperbolic type to study the dynamic effects in such systems.
An approach similar to one already applied in modeling similar problems earlier used in the work. New variant of the splitting method was used proposed by the authors. Unlike most known works, the splitting is not carried out according to physical processes (energy transport without dissipation, separately dissipative processes). We used splitting to the transport equations with the drain and the exchange between Reimann’s invariants. This splitting makes possible to construct the hybrid schemes for Riemann invariants with a high order of approximation and minimal dissipation error. An example of constructing such a hybrid differential scheme is described for a single-phase power line. The difference scheme proposed is based on the analysis of the properties of the schemes in the space of insufficient coefficients.
Examples of the model problem numerical solutions using the proposed splitting and the difference scheme are given. The results of the numerical calculations shows that the difference scheme allows to reproduce the arising regions of large gradients. It is shown that the difference schemes also allow detecting resonances in such the systems.
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Activity dynamics in virtual networks: an epidemic model vs an excitable medium model
Computer Research and Modeling, 2020, v. 12, no. 6, pp. 1485-1499Epidemic models are widely used to mimic social activity, such as spreading of rumors or panic. Simultaneously, models of excitable media are traditionally used to simulate the propagation of activity. Spreading of activity in the virtual community was simulated within two models: the SIRS epidemic model and the Wiener – Rosenblut model of the excitable media. We used network versions of these models. The network was assumed to be heterogeneous, namely, each element of the network has an individual set of characteristics, which corresponds to different psychological types of community members. The structure of a virtual network relies on an appropriate scale-free network. Modeling was carried out on scale-free networks with various values of the average degree of vertices. Additionally, a special case was considered, namely, a complete graph corresponding to a close professional group, when each member of the group interacts with each. Participants in a virtual community can be in one of three states: 1) potential readiness to accept certain information; 2) active interest to this information; 3) complete indifference to this information. These states correspond to the conditions that are usually used in epidemic models: 1) susceptible to infection, 2) infected, 3) refractory (immune or death due to disease). A comparison of the two models showed their similarity both at the level of main assumptions and at the level of possible modes. Distribution of activity over the network is similar to the spread of infectious diseases. It is shown that activity in virtual networks may experience fluctuations or decay.
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