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Parallel implementation of a finite-element algorithms on a graphics accelerator in the software package FEStudio
Computer Research and Modeling, 2014, v. 6, no. 1, pp. 79-97Views (last year): 4. Citations: 24 (RSCI).In this paper, we present new parallel algorithms for finite element analysis implemented in the FEStudio software framework. We describe the programming model of finite element method, which supports parallelism on different stages of numerical simulations. Using this model, we develop parallel algorithms of numerical integration for dynamic problems and local stiffness matrices. For constructing and solving the systems of equations, we use the CUDA programming platform.
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Electric field effects in chemical patterns
Computer Research and Modeling, 2014, v. 6, no. 5, pp. 705-718Views (last year): 8.Excitation waves are a prototype of self-organized dynamic patterns in non-equilibrium systems. They develop their own intrinsic dynamics resulting in travelling waves of various forms and shapes. Prominent examples are rotating spirals and scroll waves. It is an interesting and challenging task to find ways to control their behavior by applying external signals, upon which these propagating waves react. We apply external electric fields to such waves in the excitable Belousov–Zhabotinsky (BZ) reaction. Remarkable effects include the change of wave speed, reversal of propagation direction, annihilation of counter-rotating spiral waves and reorientation of scroll wave filaments. These effects can be explained in numerical simulations, where the negatively charged inhibitor bromide plays an essential role. Electric field effects have also been investigated in biological excitable media such as the social amoebae Dictyostelium discoideum. Quite recently we have started to investigate electric field effect in the BZ reaction dissolved in an Aerosol OT water-in-oil microemulsion. A drift of complex patterns can be observed, and also the viscosity and electric conductivity change. We discuss the assumption that this system can act as a model for long range communication between neurons.
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High performance computations on hybrid systems: will "grand challenges" be solved?
Computer Research and Modeling, 2015, v. 7, no. 3, pp. 429-437Views (last year): 7. Citations: 8 (RSCI).Based on CFD computations we provide the analysis of the possibilities for using modern hybrid distributed computational environments for large complex system simulation. We argue that only multilevel approach supported by new mathematical models of transport properties, dynamical representation of the problem with transport and internal processes separated, and modern paradigm of programming, taking into account specific properties of heterogeneous system, will make it possible to scale the problem effectively.
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The cosymmetric approach to the analysis of spatial structure of populations with amount of taxis
Computer Research and Modeling, 2016, v. 8, no. 4, pp. 661-671Views (last year): 2. Citations: 1 (RSCI).We consider a mathematical model describing the competition for a heterogeneous resource of two populations on a one-dimensional area. Distribution of populations is governed by diffusion and directed migration, species growth obeys to the logistic law. We study the corresponding problem of nonlinear parabolic equations with variable coefficients (function of a resource, parameters of growth, diffusion and migration). Approach on the theory the cosymmetric dynamic systems of V. Yudovich is applied to the analysis of population patterns. Conditions on parameters for which the problem under investigation has nontrivial cosymmetry are analytically derived. Numerical experiment is used to find an emergence of continuous family of steady states when cosymmetry takes place. The numerical scheme is based on the finite-difference discretization in space using the balance method and integration on time by Runge-Kutta method. Impact of diffusive and migration parameters on scenarios of distribution of populations is studied. In the vicinity of the line, corresponding to cosymmetry, neutral curves for diffusive parameters are calculated. We present the mappings with areas of diffusive parameters which correspond to scenarios of coexistence and extinction of species. For a number of migration parameters and resource functions with one and two maxima the analysis of possible scenarios is carried out. Particularly, we found the areas of parameters for which the survival of each specie is determined by initial conditions. It should be noted that dynamics may be nontrivial: after starting decrease in densities of both species the growth of only one population takes place whenever another specie decreases. The analysis has shown that areas of the diffusive parameters corresponding to various scenarios of population patterns are grouped near the cosymmetry lines. The derived mappings allow to explain, in particular, effect of a survival of population due to increasing of diffusive mobility in case of starvation.
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Mathematical modeling of the age groups of employed peoples by the example of the southern regions of the Russian Far East
Computer Research and Modeling, 2016, v. 8, no. 5, pp. 787-801Views (last year): 4. Citations: 3 (RSCI).The article focuses on a nonlinear mathematical model that describes the interaction of the different age groups of the employed population. The interactions are treated by analogy with population relationship (competition, discrimination, assistance, oppression, etc). Under interaction of peoples we mean the generalized social and economic mechanisms that cause related changes in the number of employees of different age groups. Three age groups of the employed population are considered. It is young specialists (15–29 years), workers with experience (30–49 years), the employees of pre-retirement and retirement age (50 and older). The estimation of model’s parameters for the southern regions of the Far Eastern Federal District (FEFD) is executed by statistical data. Analysis of model scenarios allows us to conclude the observed number fluctuations of the different ages employees on the background of a stable total employed population may be a consequence of complex interactions between these groups of peoples. Computational experiments with the obtained values of the parameters allowed us to calculate the rate of decline and the aging of the working population and to determine the nature of the interaction between the age groups of employees that are not directly as reflected in the statistics. It was found that in FEFD the employed of 50 years and older are discriminated against by the young workers under 29, employed up to 29 and 30–49 years are in a partnership. It is shown in most developed regions (Primorsky and Khabarovsk Krai) there is “uniform” competition among different age groups of the employed population. For Primorsky Krai we were able to identify the mixing effect dynamics. It is a typical situation for systems in a state of structural adjustment. This effect is reflected in the fact the long cycles of employed population form with a significant decrease in migration inflows of employees 30–49 years. Besides, the change of migration is accompanied by a change of interaction type — from employment discrimination by the oldest of middle generation to discrimination by the middle of older generation. In less developed regions (Amur, Magadan and Jewish Autonomous Regions) there are lower values of migration balance of almost all age groups and discrimination by young workers up 29 years of other age groups and employment discrimination 30–49 years of the older generation.
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Investigation of the relationships of the size and production characteristics of phyto- and zooplankton in the Vistula and Curonian lagoons of the Baltic Sea. Part 1. The statistical analysis of long-term observation data and development of the structure for the mathematical model of the plankton food chain
Computer Research and Modeling, 2017, v. 9, no. 2, pp. 211-246In the paper the statistical relationships between the size and production characteristics of phytoplankton and zooplankton of the Vistula and Curonian lagoons, the Baltic Sea, were investigated. Research phytoplankton and zooplankton within the Russian part of the area of the Vistula and the Curonian lagoon was carried out on the monthly basis (from April to November) within the framework of long-term monitoring program on evaluating of ecological status of the lagoons. The size structure of plankton is the basis for understanding of the development of production processes, mechanisms of formation of the plankton species diversity and functioning of the lagoon ecosystems. As results of the work it was found that the maximum rate of photosynthesis and the integral value of the primary production with a change in cell volume of phytoplankton are changed according to a power law. The result shows that the smaller the size of algal cells in phytoplankton communities the more actively occur metabolism and the more effective they assimilate the solar energy. It is shown that the formation of plankton species diversity in ecosystems of lagoons is closely linked with the size structure of plankton communities and with features of development of the production processes. It is proposed the structure of a spatially homogenous mathematical model of the plankton food chain for the lagoon ecosystems taking into account the size spectrum and the characteristics of phytoplankton and zooplankton. The model parameters are the sizedependent indicators allometrically linked with average volumes of cells and organisms in different ranges of their sizes. In the model the algorithm for changes over time the coefficients of food preferences in the diet of zooplankton was proposed. Developed the size-dependent mathematical model of aquatic ecosystems allows to consider the impact of turbulent exchange on the size structure and temporal dynamics of the plankton food chain of the Vistula and Curonian lagoons. The model can be used to study the different regimes of dynamic behavior of plankton systems depending on the changes in the values of its parameters and external influences, as well as to quantify the redistribution of matter flows in ecosystems of the lagoons.
Keywords: ecosystem, nutrients, phytoplankton, zooplankton, plankton detritus, size structure, the maximum rate of photosynthesis, integrated primary production, zooplankton production, allometric scaling, Shannon index of species diversity, mathematical modeling, ecological simulation model, turbulent exchange.Views (last year): 9. -
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In the article is carried out the analysis of historical process with the use of methods of synergetics (science about the nonlinear developing systems in nature and the society), developed in the works of D. S. Chernavskii in connection with to economic and social systems. It is shown that social self-organizing depending on conditions leads to the formation of both the societies with the strong internal competition (Y-structures) and cooperative type societies (X-structures). Y-structures are characteristic for the countries of the West, X-structure are characteristic for the countries of the East. It is shown that in XIX and in XX centuries occurred accelerated shaping and strengthening of Y-structures. However, at present world system entered into the period of serious structural changes in the economic, political, ideological spheres: the domination of Y-structures concludes. Are examined the possible ways of further development of the world system, connected with change in the regimes of self-organizing and limitation of internal competition. This passage will be prolonged and complex. Under these conditions it will objectively grow the value of the civilizational experience of Russia, on basis of which was formed combined type social system. It is shown that ultimately inevitable the passage from the present do-mination of Y-structures to the absolutely new global system, whose stability will be based on the new ideology, the new spirituality (i.e., new “conditional information” according D. S. Chernavskii), which makes a turn from the principles of competition to the principles of collaboration.
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Identification of a controlled object using frequency responses obtained from a dynamic neural network model of a control system
Computer Research and Modeling, 2017, v. 9, no. 5, pp. 729-740Views (last year): 10.We present results of a study aimed at identification of a controlled object’s channels based on postprocessing of measurements with development of a model of a multiple-input controlled object and subsequent active modelling experiment. The controlled object model is developed using approximation of its behavior by a neural network model using trends obtained during a passive experiment in the mode of normal operation. Recurrent neural network containing feedback elements allows to simulate behavior of dynamic objects; input and feedback time delays allow to simulate behavior of inertial objects with pure delay. The model was taught using examples of the object’s operation with a control system and is presented by a dynamic neural network and a model of a regulator with a known regulation function. The neural network model simulates the system’s behavior and is used to conduct active computing experiments. Neural network model allows to obtain the controlled object’s response to an exploratory stimulus, including a periodic one. The obtained complex frequency response is used to evaluate parameters of the object’s transfer system using the least squares method. We present an example of identification of a channel of the simulated control system. The simulated object has two input ports and one output port and varying transport delays in transfer channels. One of the input ports serves as a controlling stimulus, the second is a controlled perturbation. The controlled output value changes as a result of control stimulus produced by the regulator operating according to the proportional-integral regulation law based on deviation of the controlled value from the task. The obtained parameters of the object’s channels’ transfer functions are close to the parameters of the input simulated object. The obtained normalized error of the reaction for a single step-wise stimulus of the control system model developed based on identification of the simulated control system doesn’t exceed 0.08. The considered objects pertain to the class of technological processes with continuous production. Such objects are characteristic of chemical, metallurgic, mine-mill, pulp and paper, and other industries.
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2D microscopic and macroscopic simulation of water and porous material interaction
Computer Research and Modeling, 2018, v. 10, no. 1, pp. 77-86Views (last year): 10.In various areas of science, technology, environment protection, construction, it is very important to study processes of porous materials interaction with different substances in different aggregation states. From the point of view of ecology and environmental protection it is particularly actual to investigate processes of porous materials interaction with water in liquid and gaseous phases. Since one mole of water contains 6.022140857 · 1023 molecules of H2O, macroscopic approaches considering the water vapor as continuum media in the framework of classical aerodynamics are mainly used to describe properties, for example properties of water vapor in the pore. In this paper we construct and use for simulation the macroscopic two-dimensional diffusion model [Bitsadze, Kalinichenko, 1980] describing the behavior of water vapor inside the isolated pore. Together with the macroscopic model it is proposed microscopic model of the behavior of water vapor inside the isolated pores. This microscopic model is built within the molecular dynamics approach [Gould et al., 2005]. In the microscopic model a description of each water molecule motion is based on Newton classical mechanics considering interactions with other molecules and pore walls. Time evolution of “water vapor – pore” system is explored. Depending on the external to the pore conditions the system evolves to various states of equilibrium, characterized by different values of the macroscopic characteristics such as temperature, density, pressure. Comparisons of results of molecular dynamic simulations with the results of calculations based on the macroscopic diffusion model and experimental data allow to conclude that the combination of macroscopic and microscopic approach could produce more adequate and more accurate description of processes of water vapor interaction with porous materials.
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Investigation the material properties of a plate by laser ultrasound using the analysis of multiple waves
Computer Research and Modeling, 2019, v. 11, no. 4, pp. 653-673Views (last year): 3.Ultrasound examination of material properties is a precision method for determining their elastic and strength properties in connection with the small wavelength formed in the material after impact of a laser beam. In this paper, the wave processes arising during these measurements are considered in detail. It is shown that full-wave numerical modeling allows us to study in detail the types of waves, topological characteristics of their profile, speed of arrival of waves at various points, identification the types of waves whose measurements are most optimal for examining a sample made of a specific material of a particular shape, and to develop measurement procedures.
To carry out full-wave modeling, a grid-characteristic method on structured grids was used in this work and a hyperbolic system of equations that describes the propagation of elastic waves in the material of the thin plate under consideration on a specific example of a ratio of thickness to width of 1:10 was solved.
To simulate an elastic front that arose in the plate due to a laser beam, a model of the corresponding initial conditions was proposed. A comparison of the wave effects that arise during its use in the case of a point source and with the data of physical experiments on the propagation of laser ultrasound in metal plates was made.
A study was made on the basis of which the characteristic topological features of the wave processes under consideration were identified and revealed. The main types of elastic waves arising due to a laser beam are investigated, the possibility of their use for studying the properties of materials is analyzed. A method based on the analysis of multiple waves is proposed. The proposed method for studying the properties of a plate with the help of multiple waves on synthetic data was tested, and it showed good results.
It should be noted that most of the studies of multiple waves are aimed at developing methods for their suppression. Multiple waves are not used to process the results of ultrasound studies due to the complexity of their detection in the recorded data of a physical experiment.
Due to the use of full wave modeling and analysis of spatial dynamic wave processes, multiple waves are considered in detail in this work and it is proposed to divide materials into three classes, which allows using multiple waves to obtain information about the material of the plate.
The main results of the work are the developed problem statements for the numerical simulation of the study of plates of a finite thickness by laser ultrasound; the revealed features of the wave phenomena arising in plates of a finite thickness; the developed method for studying the properties of the plate on the basis of multiple waves; the developed classification of materials.
The results of the studies presented in this paper may be of interest not only for developments in the field of ultrasonic non-destructive testing, but also in the field of seismic exploration of the earth's interior, since the proposed approach can be extended to more complex cases of heterogeneous media and applied in geophysics.
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