Результаты поиска по 'statistical modeling':
Найдено статей: 78
  1. Grebenkin I.V., Alekseenko A.E., Gaivoronskiy N.A., Ignatov M.G., Kazennov A.M., Kozakov D.V., Kulagin A.P., Kholodov Y.A.
    Ensemble building and statistical mechanics methods for MHC-peptide binding prediction
    Computer Research and Modeling, 2020, v. 12, no. 6, pp. 1383-1395

    The proteins of the Major Histocompatibility Complex (MHC) play a key role in the functioning of the adaptive immune system, and the identification of peptides that bind to them is an important step in the development of vaccines and understanding the mechanisms of autoimmune diseases. Today, there are a number of methods for predicting the binding of a particular MHC allele to a peptide. One of the best such methods is NetMHCpan-4.0, which is based on an ensemble of artificial neural networks. This paper presents a methodology for qualitatively improving the underlying neural network underlying NetMHCpan-4.0. The proposed method uses the ensemble construction technique and adds as input an estimate of the Potts model taken from static mechanics, which is a generalization of the Ising model. In the general case, the model reflects the interaction of spins in the crystal lattice. Within the framework of the proposed method, the model is used to better represent the physical nature of the interaction of proteins included in the complex. To assess the interaction of the MHC + peptide complex, we use a two-dimensional Potts model with 20 states (corresponding to basic amino acids). Solving the inverse problem using data on experimentally confirmed interacting pairs, we obtain the values of the parameters of the Potts model, which we then use to evaluate a new pair of MHC + peptide, and supplement this value with the input data of the neural network. This approach, combined with the ensemble construction technique, allows for improved prediction accuracy, in terms of the positive predictive value (PPV) metric, compared to the baseline model.

  2. Basaeva E.K., Kamenetsky E.S., Khosaeva Z.K.
    Assessment of the elite–people interaction in post-soviet countries using the Bayesian approach
    Computer Research and Modeling, 2021, v. 13, no. 6, pp. 1233-1247

    A previously developed model that describes the dynamics of social tension in a society divided into two groups: the elite and the people was considered. This model took into account the impact of economic situation changes and the elite–people interaction. The model has been modified by including in the equation describing the tension of the people, a term that takes into account the adaptation of the people to the current situation.

    The model coefficients estimation is an important task, the solution of which allows obtaining information about the nature of the interaction between elite and people. We believe that the solution of the system of model equations with optimal coefficients is closest to the values of the indicator characterizing social tension. We used the normalized level of homicide rate as an indicator of social tension.

    The model contains seven coefficients. Two coefficients characterizing the influence of economic situation changes on elite and people are taken equal to each other and the same for all countries. We obtained their estimations using a simplified model that takes into account only the change in the economic situation and allows an analytical solution.

    The Bayesian approach was used to estimate the remaining five coefficients of model for post-Soviet countries. The prior probability densities of the four coefficients for all countries under consideration were taken to be the same. The prior probability density of fifth coefficient was considered to depend on the regime of government (authoritarian or «transitional»). We assumed that the calculated tension matches with the corresponding indicator of tension in cases where the difference between them does not exceed 5%.

    The calculations showed that for the post-Soviet countries, a good coincidence was obtained between the calculated values of the people tension and the normalized level of homicide rate. The coincidence is satisfactory only on average.

    The following main results was obtained at the work: under the influence of some «significant» events in 40% of post-Soviet countries, there was a rapid change in the nature of interaction between the elite and the people; regional feature have some influence on the elite–people interaction; the type of government does not significantly affect the elite–people interaction; the method for assessing the stability of the country by the value of the model coefficients is proposed.

  3. Kazarnikov A.V.
    Analysing the impact of migration on background social strain using a continuous social stratification model
    Computer Research and Modeling, 2022, v. 14, no. 3, pp. 661-673

    The background social strain of a society can be quantitatively estimated using various statistical indicators. Mathematical models, allowing to forecast the dynamics of social strain, are successful in describing various social processes. If the number of interacting groups is small, the dynamics of the corresponding indicators can be modelled with a system of ordinary differential equations. The increase in the number of interacting components leads to the growth of complexity, which makes the analysis of such models a challenging task. A continuous social stratification model can be considered as a result of the transition from a discrete number of interacting social groups to their continuous distribution in some finite interval. In such a model, social strain naturally spreads locally between neighbouring groups, while in reality, the social elite influences the whole society via news media, and the Internet allows non-local interaction between social groups. These factors, however, can be taken into account to some extent using the term of the model, describing negative external influence on the society. In this paper, we develop a continuous social stratification model, describing the dynamics of two societies connected through migration. We assume that people migrate from the social group of donor society with the highest strain level to poorer social layers of the acceptor society, transferring the social strain at the same time. We assume that all model parameters are constants, which is a realistic assumption for small societies only. By using the finite volume method, we construct the spatial discretization for the problem, capable of reproducing finite propagation speed of social strain. We verify the discretization by comparing the results of numerical simulations with the exact solutions of the auxiliary non-linear diffusion equation. We perform the numerical analysis of the proposed model for different values of model parameters, study the impact of migration intensity on the stability of acceptor society, and find the destabilization conditions. The results, obtained in this work, can be used in further analysis of the model in the more realistic case of inhomogeneous coefficients.

  4. Aronov I.Z., Maksimova O.V., Zazhigalkin A.V.
    Investigation of time to reach consensus on the work of technical committees on standardization based on regular Markov chains
    Computer Research and Modeling, 2015, v. 7, no. 4, pp. 941-950

    In this paper construct the mathematical model for consensus in technical committees for standardization (TC), based on the consensus model proposed DeGroot. The basic problems of achieving consensus in the development of consensus standards in terms of the proposed model are discussed. The results of statistical modeling characterizing the dependence of time to reach consensus on the number of members of the TC and their authoritarianism are presented. It has been shown that increasing the number of TC experts and authoritarianism negative impact on the time to reach a consensus and increase fragmentation of the TC.

    Views (last year): 5. Citations: 8 (RSCI).
  5. Usanov M.S., Kulberg N.S., Yakovleva T.V., Morozov S.P.
    Determination of CT dose by means of noise analysis
    Computer Research and Modeling, 2018, v. 10, no. 4, pp. 525-533

    The article deals with the process of creating an effective algorithm for determining the amount of emitted quanta from an X-ray tube in computer tomography (CT) studies. An analysis of domestic and foreign literature showed that most of the work in the field of radiometry and radiography takes the tabulated values of X-ray absorption coefficients into account, while individual dose factors are not taken into account at all since many studies are lacking the Dose Report. Instead, an average value is used to simplify the calculation of statistics. In this regard, it was decided to develop a method to detect the amount of ionizing quanta by analyzing the noise of CT data. As the basis of the algorithm, we used Poisson and Gauss distribution mathematical model of owns’ design of logarithmic value. The resulting mathematical model was tested on the CT data of a calibration phantom consisting of three plastic cylinders filled with water, the X-ray absorption coefficient of which is known from the table values. The data were obtained from several CT devices from different manufacturers (Siemens, Toshiba, GE, Phillips). The developed algorithm made it possible to calculate the number of emitted X-ray quanta per unit time. These data, taking into account the noise level and the radiuses of the cylinders, were converted to X-ray absorption values, after which a comparison was made with tabulated values. As a result of this operation, the algorithm used with CT data of various configurations, experimental data were obtained, consistent with the theoretical part and the mathematical model. The results showed good accuracy of the algorithm and mathematical apparatus, which shows reliability of the obtained data. This mathematical model is already used in the noise reduction program of the CT of own design, where it participates as a method of creating a dynamic threshold of noise reduction. At the moment, the algorithm is being processed to work with real data from computer tomography of patients.

    Views (last year): 23. Citations: 1 (RSCI).
  6. Shumov V.V.
    The model of the rationale for the focus of border security efforts at the state level
    Computer Research and Modeling, 2019, v. 11, no. 1, pp. 187-196

    The most important principle of military science and border security is the principle of concentrating the main efforts on the main directions and tasks. At the tactical level, there are many mathematical models for computing the optimal resource allocation by directions and objects, whereas at the state level there are no corresponding models. Using the statistical data on the results of the protection of the US border, an exponential type border production function parameter is calculated that reflects the organizational and technological capabilities of the border guard. The production function determines the dependence of the probability of detaining offenders from the density of border guards per kilometer of the border. Financial indicators in the production function are not taken into account, as the border maintenance budget and border equipment correlate with the number of border agents. The objective function of the border guards is defined — the total prevented damage from detained violators taking into account their expected danger for the state and society, which is to be maximized. Using Slater's condition, the solution of the problem was found — optimal density of border guard was calculated for the regions of the state. Having a model of resource allocation, the example of the three border regions of the United States has also solved the reverse problem — threats in the regions have been assessed based on the known allocation of resources. The expected danger from an individual offender on the US-Canada border is 2–5 times higher than from an offender on the US-Mexican border. The results of the calculations are consistent with the views of US security experts: illegal migrants are mostly detained on the US-Mexican border, while potential terrorists prefer to use other channels of penetration into the US (including the US-Canadian border), where the risks of being detained are minimal. Also, the results of the calculations are consistent with the established practice of border protection: in 2013 the number of border guards outside the checkpoints on the US-Mexican border increased by 2 times compared with 2001, while on the American-Canadian border — 4 times. The practice of border protection and the views of specialists give grounds for approval of the verification of the model.

    Views (last year): 26.
  7. Naumov I.V., Otmakhova Y.S., Krasnykh S.S.
    Methodological approach to modeling and forecasting the impact of the spatial heterogeneity of the COVID-19 spread on the economic development of Russian regions
    Computer Research and Modeling, 2021, v. 13, no. 3, pp. 629-648

    The article deals with the development of a methodological approach to forecasting and modeling the socioeconomic consequences of viral epidemics in conditions of heterogeneous economic development of territorial systems. The relevance of the research stems from the need for rapid mechanisms of public management and stabilization of adverse epidemiological situation, taking into account the spatial heterogeneity of the spread of COVID-19, accompanied by a concentration of infection in large metropolitan areas and territories with high economic activity. The aim of the work is to substantiate a methodology to assess the spatial heterogeneity of the spread of coronavirus infection, find poles of its growth, emerging spatial clusters and zones of their influence with the assessment of inter-territorial relationships, as well as simulate the effects of worsening epidemiological situation on the dynamics of economic development of regional systems. The peculiarity of the developed approach is the spatial clustering of regional systems by the level of COVID-19 incidence, conducted using global and local spatial autocorrelation indices, various spatial weight matrices, and L.Anselin mutual influence matrix based on the statistical information of the Russian Federal State Statistics Service. The study revealed a spatial cluster characterized by high levels of infection with COVID-19 with a strong zone of influence and stable interregional relationships with surrounding regions, as well as formed growth poles which are potential poles of further spread of coronavirus infection. Regression analysis using panel data not only confirmed the impact of COVID-19 incidence on the average number of employees in enterprises, the level of average monthly nominal wages, but also allowed to form a model for scenario prediction of the consequences of the spread of coronavirus infection. The results of this study can be used to form mechanisms to contain the coronavirus infection and stabilize socio-economic at macroeconomic and regional level and restore the economy of territorial systems, depending on the depth of the spread of infection and the level of economic damage caused.

  8. Varshavskiy A.E.
    A model for analyzing income inequality based on a finite functional sequence (adequacy and application problems)
    Computer Research and Modeling, 2022, v. 14, no. 3, pp. 675-689

    The paper considers the adequacy of the model developed earlier by the author for the analysis of income inequality and based on an empirically confirmed hypothesis that the relative (to the income of the richest group) income values of 20% population groups in total income can be represented as a finite functional sequence, each member of which depends on one parameter — a specially defined indicator of inequality. It is shown that in addition to the existing methods of inequality analysis, the model makes it possible to estimate with the help of analytical expressions the income shares of 20%, 10% and smaller groups of the population for different levels of inequality, as well as to identify how they change with the growth of inequality, to estimate the level of inequality for known ratios between the incomes of different groups of the population, etc.

    The paper provides a more detailed confirmation of the proposed model adequacy in comparison with the previously obtained results of statistical analysis of empirical data on the distribution of income between the 20% and 10% population groups. It is based on the analysis of certain ratios between the values of quintiles and deciles according to the proposed model. The verification of these ratios was carried out using a set of data for a large number of countries and the estimates obtained confirm the sufficiently high accuracy of the model.

    Data are presented that confirm the possibility of using the model to analyze the dependence of income distribution by population groups on the level of inequality, as well as to estimate the inequality indicator for income ratios between different groups, including variants when the income of the richest 20% is equal to the income of the poor 60 %, income of the middle class 40% or income of the rest 80% of the population, as well as when the income of the richest 10% is equal to the income of the poor 40 %, 50% or 60%, to the income of various middle class groups, etc., as well as for cases, when the distribution of income obeys harmonic proportions and when the quintiles and deciles corresponding to the middle class reach a maximum. It is shown that the income shares of the richest middle class groups are relatively stable and have a maximum at certain levels of inequality.

    The results obtained with the help of the model can be used to determine the standards for developing a policy of gradually increasing the level of progressive taxation in order to move to the level of inequality typical of countries with social oriented economy.

  9. Petrov A.P., Podlipskaia O.G., Pronchev G.B.
    Modeling the dynamics of public attention to extended processes on the example of the COVID-19 pandemic
    Computer Research and Modeling, 2022, v. 14, no. 5, pp. 1131-1141

    The dynamics of public attention to COVID-19 epidemic is studied. The level of public attention is described by the daily number of search requests in Google made by users from a given country. In the empirical part of the work, data on the number of requests and the number of infected cases for a number of countries are considered. It is shown that in all cases the maximum of public attention occurs earlier than the maximum daily number of newly infected individuals. Thus, for a certain period of time, the growth of the epidemics occurs in parallel with the decline in public attention to it. It is also shown that the decline in the number of requests is described by an exponential function of time. In order to describe the revealed empirical pattern, a mathematical model is proposed, which is a modification of the model of the decline in attention after a one-time political event. The model develops the approach that considers decision-making by an individual as a member of the society in which the information process takes place. This approach assumes that an individual’s decision about whether or not to make a request on a given day about COVID is based on two factors. One of them is an attitude that reflects the individual’s long-term interest in a given topic and accumulates the individual’s previous experience, cultural preferences, social and economic status. The second is the dynamic factor of public attention to the epidemic, which changes during the process under consideration under the influence of informational stimuli. With regard to the subject under consideration, information stimuli are related to epidemic dynamics. The behavioral hypothesis is that if on some day the sum of the attitude and the dynamic factor exceeds a certain threshold value, then on that day the individual in question makes a search request on the topic of COVID. The general logic is that the higher the rate of infection growth, the higher the information stimulus, the slower decreases public attention to the pandemic. Thus, the constructed model made it possible to correlate the rate of exponential decrease in the number of requests with the rate of growth in the number of cases. The regularity found with the help of the model was tested on empirical data. It was found that the Student’s statistic is 4.56, which allows us to reject the hypothesis of the absence of a correlation with a significance level of 0.01.

  10. Lukyantsev D.S., Afanasiev N.T., Tanaev A.B., Chudaev S.O.
    Numerical-analytical modeling of gravitational lensing of the electromagnetic waves in random-inhomogeneous space plasma
    Computer Research and Modeling, 2024, v. 16, no. 2, pp. 433-443

    Instrument of numerical-analytical modeling of characteristics of propagation of electromagnetic waves in chaotic space plasma with taking into account effects of gravitation is developed for interpretation of data of measurements of astrophysical precision instruments of new education. The task of propagation of waves in curved (Riemann’s) space is solved in Euclid’s space by introducing of the effective index of refraction of vacuum. The gravitational potential can be calculated for various model of distribution of mass of astrophysical objects and at solution of Poisson’s equation. As a result the effective index of refraction of vacuum can be evaluated. Approximate model of the effective index of refraction is suggested with condition that various objects additively contribute in total gravitational field. Calculation of the characteristics of electromagnetic waves in the gravitational field of astrophysical objects is performed by the approximation of geometrical optics with condition that spatial scales of index of refraction a lot more wavelength. Light differential equations in Euler’s form are formed the basis of numerical-analytical instrument of modeling of trajectory characteristic of waves. Chaotic inhomogeneities of space plasma are introduced by model of spatial correlation function of index of refraction. Calculations of refraction scattering of waves are performed by the approximation of geometrical optics. Integral equations for statistic moments of lateral deviations of beams in picture plane of observer are obtained. Integrals for moments are reduced to system of ordinary differential equations the firsts order with using analytical transformations for cooperative numerical calculation of arrange and meansquare deviations of light. Results of numerical-analytical modeling of trajectory picture of propagation of electromagnetic waves in interstellar space with taking into account impact of gravitational fields of space objects and refractive scattering of waves on inhomogeneities of index of refraction of surrounding plasma are shown. Based on the results of modeling quantitative estimation of conditions of stochastic blurring of the effect of gravitational lensing of electromagnetic waves at various frequency ranges is performed. It’s shown that operating frequencies of meter range of wavelengths represent conditional low-frequency limit for observational of the effect of gravitational lensing in stochastic space plasma. The offered instrument of numerical-analytical modeling can be used for analyze of structure of electromagnetic radiation of quasar propagating through group of galactic.

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