Результаты поиска по 'SIMPLE':
Найдено статей: 74
  1. Yakushevich L.V.
    Electronic analogue of DNA
    Computer Research and Modeling, 2017, v. 9, no. 5, pp. 789-798

    It is known that the internal mobility of DNA molecules plays an important role in the functioning of these molecules. This explains the great interest of researchers in studying the internal dynamics of DNA. Complexity, laboriousness and high cost of research in this field stimulate the search and creation of simpler physical analogues, convenient for simulating the various dynamic regimes possible in DNA. One of the directions of such a search is connected with the use of a mechanical analogue of DNA — a chain of coupled pendulums. In this model, pendulums imitate nitrous bases, horizontal thread on which pendulums are suspended, simulates a sugarphosphate chain, and gravitational field simulates a field induced by a second strand of DNA. Simplicity and visibility are the main advantages of the mechanical analogue. However, the model becomes too cumbersome in cases where it is necessary to simulate long (more than a thousand base pairs) DNA sequences. Another direction is associated with the use of an electronic analogue of the DNA molecule, which has no shortcomings of the mechanical model. In this paper, we investigate the possibility of using the Josephson line as an electronic analogue. We calculated the coefficients of the direct and indirect transformations for the simple case of a homogeneous, synthetic DNA, the sequence of which contains only adenines. The internal mobility of the DNA molecule was modeled by the sine-Gordon equation for angular vibrations of nitrous bases belonging to one of the two polynucleotide chains of DNA. The second polynucleotide chain was modeled as a certain average field in which these oscillations occur. We obtained the transformation, allowing the transition from DNA to an electronic analog in two ways. The first includes two stages: (1) the transition from DNA to the mechanical analogue (a chain of coupled pendulums) and (2) the transition from the mechanical analogue to the electronic one (the Josephson line). The second way is direct. It includes only one stage — a direct transition from DNA to the electronic analogue.

    Views (last year): 9.
  2. Aristov V.V., Stroganov A.V., Yastrebov A.D.
    Application of the kinetic type model for study of a spatial spread of COVID-19
    Computer Research and Modeling, 2021, v. 13, no. 3, pp. 611-627

    A simple model based on a kinetic-type equation is proposed to describe the spread of a virus in space through the migration of virus carriers from a certain center. The consideration is carried out on the example of three countries for which such a one-dimensional model is applicable: Russia, Italy and Chile. The geographical location of these countries and their elongation in the direction from the centers of infection (Moscow, Milan and Lombardia in general, as well as Santiago, respectively) makes it possible to use such an approximation. The aim is to determine the dynamic density of the infected in time and space. The model is two-parameter. The first parameter is the value of the average spreading rate associated with the transfer of infected moving by transport vehicles. The second parameter is the frequency of the decrease of the infected as they move through the country, which is associated with the passengers reaching their destination, as well as with quarantine measures. The parameters are determined from the actual known data for the first days of the spatial spread of the epidemic. An analytical solution is being built; simple numerical methods are also used to obtain a series of calculations. The geographical spread of the disease is a factor taken into account in the model, the second important factor is that contact infection in the field is not taken into account. Therefore, the comparison of the calculated values with the actual data in the initial period of infection coincides with the real data, then these data become higher than the model data. Those no less model calculations allow us to make some predictions. In addition to the speed of infection, a similar “speed of recovery” is possible. When such a speed is found for the majority of the country's population, a conclusion is made about the beginning of a global recovery, which coincides with real data.

  3. Lukianchenko P.P., Danilov A.M., Bugaev A.S., Gorbunov E.I., Pashkov R.A., Ilyina P.G., Gadzhimirzayev Sh.M.
    Approach to Estimating the Dynamics of the Industry Consolidation Level
    Computer Research and Modeling, 2023, v. 15, no. 1, pp. 129-140

    In this article we propose a new approach to the analysis of econometric industry parameters for the industry consolidation level. The research is based on the simple industry automatic control model. The state of the industry is measured by quarterly obtained econometric parameters from each industry’s company provided by the tax control regulator. An approach to analysis of the industry, which does not provide for tracking the economy of each company, but explores the parameters of the set of all companies as a whole, is proposed. Quarterly obtained econometric parameters from each industry’s company are Income, Quantity of employers, Taxes, and Income from Software Licenses. The ABC analysis method was modified by ABCD analysis (D — companies with zero-level impact to industry metrics) and used to make the results obtained for different indicators comparable. Pareto charts were formed for the set of econometric indicators.

    To estimate the industry monopolization, the Herfindahl – Hirschman index was calculated for the most sensitive companies metrics. Using the HHI approach, it was proved that COVID-19 does not lead to changes in the monopolization of the Russian IT industry.

    As the most visually obvious approach to the industry visualization, scattering diagrams in combination with the Pareto graph colors were proposed. The affect of the accreditation procedure is clearly observed by scattering diagram in combination with red/black dots for accredited and nonaccredited companies respectively.

    The last reported result is the proposal to use the Licenses End-to-End Product Identification as the market structure control instrument. It is the basis to avoid the multiple accounting of the licenses reselling within the chain of software distribution.

    The results of research could be the basis for future IT industry analysis and simulation on the agent based approach.

  4. Popov D.I.
    Calibration of an elastostatic manipulator model using AI-based design of experiment
    Computer Research and Modeling, 2023, v. 15, no. 6, pp. 1535-1553

    This paper demonstrates the advantages of using artificial intelligence algorithms for the design of experiment theory, which makes possible to improve the accuracy of parameter identification for an elastostatic robot model. Design of experiment for a robot consists of the optimal configuration-external force pairs for the identification algorithms and can be described by several main stages. At the first stage, an elastostatic model of the robot is created, taking into account all possible mechanical compliances. The second stage selects the objective function, which can be represented by both classical optimality criteria and criteria defined by the desired application of the robot. At the third stage the optimal measurement configurations are found using numerical optimization. The fourth stage measures the position of the robot body in the obtained configurations under the influence of an external force. At the last, fifth stage, the elastostatic parameters of the manipulator are identified based on the measured data.

    The objective function required to finding the optimal configurations for industrial robot calibration is constrained by mechanical limits both on the part of the possible angles of rotation of the robot’s joints and on the part of the possible applied forces. The solution of this multidimensional and constrained problem is not simple, therefore it is proposed to use approaches based on artificial intelligence. To find the minimum of the objective function, the following methods, also sometimes called heuristics, were used: genetic algorithms, particle swarm optimization, simulated annealing algorithm, etc. The obtained results were analyzed in terms of the time required to obtain the configurations, the optimal value, as well as the final accuracy after applying the calibration. The comparison showed the advantages of the considered optimization techniques based on artificial intelligence over the classical methods of finding the optimal value. The results of this work allow us to reduce the time spent on calibration and increase the positioning accuracy of the robot’s end-effector after calibration for contact operations with high loads, such as machining and incremental forming.

  5. Tumanyan A.G., Bartsev S.I.
    Simple behavioral model of imprint formation
    Computer Research and Modeling, 2014, v. 6, no. 5, pp. 793-802

    Formation of adequate behavioral patterns in condition of the unknown environment carried out through exploratory behavior. At the same time the rapid formation of an acceptable pattern is more preferable than a long elaboration perfect pattern through repeat play learning situation. In extreme situations, phenomenon of imprinting is observed — instant imprinting of behavior pattern, which ensure the survival of individuals. In this paper we propose a hypothesis and imprint model when trained on a single successful pattern of virtual robot's neural network demonstrates the effective functioning. Realism of the model is estimated by checking the stability of playback behavior pattern to perturbations situation imprint run.

    Views (last year): 5. Citations: 2 (RSCI).
  6. Grinevich A.A., Yakushevich L.V.
    On the computer experiments of Kasman
    Computer Research and Modeling, 2019, v. 11, no. 3, pp. 503-513

    In 2007 Kasman conducted a series of original computer experiments with sine-Gordon kinks moving along artificial DNA sequences. Two sequences were considered. Each consisted of two parts separated by a boundary. The left part of the first sequence contained repeating TTA triplets that encode leucines, and the right part contained repeating CGC triplets that encode arginines. In the second sequence, the left part contained repeating CTG triplets encoding leucines, and the right part contained repeating AGA triplets encoding arginines. When modeling the kink movement, an interesting effect was discovered. It turned out that the kink, moving in one of the sequences, stopped without reaching the end of the sequence, and then “bounced off” as if he had hit a wall. At the same time, the kink movement in the other sequence did not stop during the entire time of the experiment. In these computer experiments, however, a simple DNA model proposed by Salerno was used. It takes into account differences in the interactions of complementary bases within pairs, but does not take into account differences in the moments of inertia of nitrogenous bases and in the distances between the centers of mass of the bases and the sugar-phosphate chain. The question of whether the Kasman effect will continue with the use of more accurate DNA models is still open. In this paper, we investigate the Kasman effect on the basis of a more accurate DNA model that takes both of these differences into account. We obtained the energy profiles of Kasman's sequences and constructed the trajectories of the motion of kinks launched in these sequences with different initial values of the energy. The results of our investigations confirmed the existence of the Kasman effect, but only in a limited interval of initial values of the kink energy and with a certain direction of the kinks movement. In other cases, this effect did not observe. We discussed which of the studied sequences were energetically preferable for the excitation and propagation of kinks.

    Views (last year): 23.
  7. Malikov Z.M., Nazarov F.K.
    Study of turbulence models for calculating a strongly swirling flow in an abrupt expanding channel
    Computer Research and Modeling, 2021, v. 13, no. 4, pp. 793-805

    In this paper, compared fundamentally different turbulence models for calculating a strongly swirling flow in an abrupt expanding pipe. This task is not only of great importance in practice, but also in theoretical terms. Because in such a flow a very complex anisotropic turbulence with recirculation zones arises and the study of the ongoing processes allows us to find an answer to many questions about turbulence. The flow under consideration has been well studied experimentally. Therefore, it is a very complex and interesting test problem for turbulence models. In the paper compared the numerical results of the one-parameter vt-92 model, the SSG/LRR-RSMw2012 Reynolds stress method and the new two-fluid model. These models are very different from each other. Because the Boussinesq hypothesis is used in the one-parameter vt-92 model, in the SSG/LRR-RSM-w2012 model, its own equation is written for each stress, and for the new two-fluid model, the basis is a completely different approach to turbulence. A feature of the approach to turbulence for the new two-fluid model is that it allows one to obtain a closed system of equations. Comparison of these models is carried out not only by the correspondence of their results with experimental data, but also by the computational resources expended on the numerical implementation of these models. Therefore, in this work, for all models, the same technique was used to numerically calculate the turbulent swirling flow at the Reynolds number $Re=3\cdot 10^4$ and the swirl parameter $S_w=0.6$. In the paper showed that the new two-fluid model is effective for the study of turbulent flows, because has good accuracy in describing complex anisotropic turbulent flows and is simple enough for numerical implementation.

  8. Kurakin P.V.
    Technoscape: multi-agent model for evolution of network of cities, joined by production and trade links
    Computer Research and Modeling, 2022, v. 14, no. 1, pp. 163-178

    The paper presents agent-based model for city formation named Technoscape which is both local and nonlocal. Technoscape can, to a certain degree, be also assumed as a model for emergence of global economy. The current version of the model implements very simple way of agents’ behavior and interaction, still the model provides rather interesting spatio-temporal patterns.

    Locality and non-locality mean here the spatial features of the way the agents interact with each other and with geographical space upon which the evolution takes place. Technoscape agent is some conventional artisan, family, or а producing and trading firm, while there is no difference between production and trade. Agents are located upon and move through bounded two-dimensional space divided into square cells. The model demonstrates processes of agents’ concentration in a small set of cells, which is interpreted as «city» formation. Agents are immortal, they don’t mutate and evolve, though this is interesting perspective for the evolution of the model itself.

    Technoscape provides some distinctively new type of self-organization. Partially, this type of selforganization resembles the behavior of segregation model by Thomas Shelling, still that model has evolution rules substantially different from Technoscape. In Shelling model there exist avalanches still simple equilibria exist if no new agents are added to the game board, while in Technoscape no such equilibria exist. At best, we can observe quasi-equilibrium, slowly changing global states.

    One non-trivial phenomenon Technoscape exhibits, which also contrasts to Shelling segregation model, is the ability of agents to concentrate in local cells (interpreted as cities) even explicitly and totally ignoring local interactions, using non-local interactions only.

    At the same time, while the agents tend to concentrate in large one-cell cities, large scale of such cities does not guarantee them from decay: there always exists a process of «enticement» of agents and their flow to new cities.

  9. A simple non-linear model allowing to calculate daily and monthly GPP and NPP of forests using parameters characterizing the light-use efficiencies for GPP and NPP, and integral values of absorbed photosynthetically active radiation, obtained using field measurements and remotes sensing data was suggested. Daily and monthly GPP, NPP of the forest ecosystems were derived from the field measurements of the net ecosystem exchange of CO2 in the spruce and tropical rain forests using a process-based Mixfor-SVAT model.

    Views (last year): 1. Citations: 2 (RSCI).
  10. Karpaev A.A., Aliev R.R.
    Application of simplified implicit Euler method for electrophysiological models
    Computer Research and Modeling, 2020, v. 12, no. 4, pp. 845-864

    A simplified implicit Euler method was analyzed as an alternative to the explicit Euler method, which is a commonly used method in numerical modeling in electrophysiology. The majority of electrophysiological models are quite stiff, since the dynamics they describe includes a wide spectrum of time scales: a fast depolarization, that lasts milliseconds, precedes a considerably slow repolarization, with both being the fractions of the action potential observed in excitable cells. In this work we estimate stiffness by a formula that does not require calculation of eigenvalues of the Jacobian matrix of the studied ODEs. The efficiency of the numerical methods was compared on the case of typical representatives of detailed and conceptual type models of excitable cells: Hodgkin–Huxley model of a neuron and Aliev–Panfilov model of a cardiomyocyte. The comparison of the efficiency of the numerical methods was carried out via norms that were widely used in biomedical applications. The stiffness ratio’s impact on the speedup of simplified implicit method was studied: a real gain in speed was obtained for the Hodgkin–Huxley model. The benefits of the usage of simple and high-order methods for electrophysiological models are discussed along with the discussion of one method’s stability issues. The reasons for using simplified instead of high-order methods during practical simulations were discussed in the corresponding section. We calculated higher order derivatives of the solutions of Hodgkin-Huxley model with various stiffness ratios; their maximum absolute values appeared to be quite large. A numerical method’s approximation constant’s formula contains the latter and hence ruins the effect of the other term (a small factor which depends on the order of approximation). This leads to the large value of global error. We committed a qualitative stability analysis of the explicit Euler method and were able to estimate the model’s parameters influence on the border of the region of absolute stability. The latter is used when setting the value of the timestep for simulations a priori.

Pages: « first previous next last »

Indexed in Scopus

Full-text version of the journal is also available on the web site of the scientific electronic library eLIBRARY.RU

The journal is included in the Russian Science Citation Index

The journal is included in the RSCI

International Interdisciplinary Conference "Mathematics. Computing. Education"