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In this paper, we consider two variants of the concept of sharp minimum for mathematical programming problems with quasiconvex objective function and inequality constraints. It investigated the problem of describing a variant of a simple subgradient method with switching along productive and non-productive steps, for which, on a class of problems with Lipschitz functions, it would be possible to guarantee convergence with the rate of geometric progression to the set of exact solutions or its vicinity. It is important that to implement the proposed method there is no need to know the sharp minimum parameter, which is usually difficult to estimate in practice. To overcome this problem, the authors propose to use a step adjustment procedure similar to that previously proposed by B. T. Polyak. However, in this case, in comparison with the class of problems without constraints, it arises the problem of knowing the exact minimal value of the objective function. The paper describes the conditions for the inexactness of this information, which make it possible to preserve convergence with the rate of geometric progression in the vicinity of the set of minimum points of the problem. Two analogs of the concept of a sharp minimum for problems with inequality constraints are considered. In the first one, the problem of approximation to the exact solution arises only to a pre-selected level of accuracy, for this, it is considered the case when the minimal value of the objective function is unknown; instead, it is given some approximation of this value. We describe conditions on the inexact minimal value of the objective function, under which convergence to the vicinity of the desired set of points with a rate of geometric progression is still preserved. The second considered variant of the sharp minimum does not depend on the desired accuracy of the problem. For this, we propose a slightly different way of checking whether the step is productive, which allows us to guarantee the convergence of the method to the exact solution with the rate of geometric progression in the case of exact information. Convergence estimates are proved under conditions of weak convexity of the constraints and some restrictions on the choice of the initial point, and a corollary is formulated for the convex case when the need for an additional assumption on the choice of the initial point disappears. For both approaches, it has been proven that the distance from the current point to the set of solutions decreases with increasing number of iterations. This, in particular, makes it possible to limit the requirements for the properties of the used functions (Lipschitz-continuous, sharp minimum) only for a bounded set. Some computational experiments are performed, including for the truss topology design problem.

An analytical solution is obtained for seismic wave fields in a spherically symmetric Earth. In the case of an arbitrary layered medium, the solution, which includes Bessel functions, is constructed by means of a differential sweep method. Asymptotic of Bessel functions is used for stable calculation of wave fields. It is shown that the classical asymptotic in the case of a sphere of large (in wavelengths) dimensions gives an error in the solution. The new asymptotic is used for efficient calculation of a solution without errors with high detail. A program has been created that makes it possible to carry out calculations for high-frequency (1 hertz and higher) teleseismic wave fields in a discrete (layered) sphere of planetary dimensions. Calculations can be carried even out on personal computers with OpenMP parallelization.

In the works of Burmin (2019) proposed a spherically symmetric model of the Earth. It is characterized by the fact that in it the outer core has a viscosity and, therefore, an effective shear modulus other than zero. For this model of the Earth, a highly detailed calculation was carried out with a carrier frequency of 1 hertz. As a result of the analytical calculation, it was found that highfrequency oscillations of small amplitude, the so-called “precursors”, appear ahead of the PKP waves. An analytical calculation showed that the theoretical seismograms for this model of the Earth are in many respects similar to the experimental data. This confirms the correctness of the ideas underlying its construction.

A computer model of component analysis of binary media, based on application of a new method acoustic reflecto-impedancemetry and realized in graphic programming environment LabVIEW is considered. Prospects of metrological and instrumental provisions of experimental applications of the model are discussed.

The aim of the work was to study and develop methods of forecasting the dynamics of the human respiratory reactions, based on mathematical modeling. To achieve this goal have been set and solved the following tasks: developed and justified the overall structure and formalized description of the model Respiro-reflex system; built and implemented the algorithm in software models of gas exchange of the body; computational experiments and checking the adequacy of the model-based Lite-ture data and our own experimental studies.

In this embodiment, a new comprehensive model entered partial model modified version of physicochemical properties and blood acid-base balance. In developing the model as the basis of a formalized description was based on the concept of separation of physiologically-fi system of regulation on active and passive subsystems regulation. Development of the model was carried out in stages. Integrated model of gas exchange consisted of the following special models: basic biophysical models of gas exchange system; model physicochemical properties and blood acid-base balance; passive mechanisms of gas exchange model developed on the basis of mass balance equations Grodinza F.; chemical regulation model developed on the basis of a multifactor model D. Gray.

For a software implementation of the model, calculations were made in MatLab programming environment. To solve the equations of the method of Runge–Kutta–Fehlberga. It is assumed that the model will be presented in the form of a computer research program, which allows implements vat various hypotheses about the mechanism of the observed processes. Calculate the expected value of the basic indicators of gas exchange under giperkap Britain and hypoxia. The results of calculations as the nature of, and quantity is good enough co-agree with the data obtained in the studies on the testers. The audit on Adek-vatnost confirmed that the error calculation is within error of copper-to-biological experiments. The model can be used in the theoretical prediction of the dynamics of the respiratory reactions of the human body in a changed atmosphere.

X-ray diffraction experiment allows determining of magnitudes of complex coefficients in the decomposition of the studied electron density distribution into Fourier series. The determination of the lost in the experiment phase values poses the central problem of the method, namely the phase problem. Some methods for solving of the phase problem result in a set of feasible solutions. Cluster analysis method may be used to investigate the composition of this set and to extract one or several typical solutions. An essential feature of the approach is the estimation of the closeness of two solutions by the map correlation between two aligned Fourier syntheses calculated with the use of phase sets under comparison. An interactive computer program ClanGR was designed to perform this analysis.

Bioenergetic regularities determining the maximal biomass yield in aerobic microbial growth on various substrates have been considered. The approach is based on the method of mass-energy balance and application of GenMetPath computer program package. An equation system describing the balances of quantities of 1) metabolite reductivity and 2) high-energy bonds formed and expended has been formulated. In order to formulate the system, the whole metabolism is subdivided into constructive and energetic partial metabolisms. The constructive metabolism is, in turn, subdivided into two parts: forward and standard. The latter subdivision is based on the choice of nodal metabolites. The forward constructive metabolism is substantially dependent on growth substrate: it converts the substrate into the standard set of nodal metabolites. The latter is, then, converted into biomass macromolecules by the standard constructive metabolism which is the same on various substrates. Variations of flows via nodal metabolites are shown to exert minor effects on the standard constructive metabolism. As a separate case, the growth on substrates requiring the participation of oxygenases and/or oxidase is considered. The bioenergetic characteristics of the standard constructive metabolism are found from a large amount of data for the growth of various organisms on glucose. The described approach can be used for prediction of biomass growth yield on substrates with known reactions of their primary metabolization. As an example, the growth of a yeast culture on ethanol has been considered. The value of maximal growth yield predicted by the method described here showed very good consistency with the value found experimentally.

The article deals with the process of creating an effective algorithm for determining the amount of emitted quanta from an X-ray tube in computer tomography (CT) studies. An analysis of domestic and foreign literature showed that most of the work in the field of radiometry and radiography takes the tabulated values of X-ray absorption coefficients into account, while individual dose factors are not taken into account at all since many studies are lacking the Dose Report. Instead, an average value is used to simplify the calculation of statistics. In this regard, it was decided to develop a method to detect the amount of ionizing quanta by analyzing the noise of CT data. As the basis of the algorithm, we used Poisson and Gauss distribution mathematical model of owns’ design of logarithmic value. The resulting mathematical model was tested on the CT data of a calibration phantom consisting of three plastic cylinders filled with water, the X-ray absorption coefficient of which is known from the table values. The data were obtained from several CT devices from different manufacturers (Siemens, Toshiba, GE, Phillips). The developed algorithm made it possible to calculate the number of emitted X-ray quanta per unit time. These data, taking into account the noise level and the radiuses of the cylinders, were converted to X-ray absorption values, after which a comparison was made with tabulated values. As a result of this operation, the algorithm used with CT data of various configurations, experimental data were obtained, consistent with the theoretical part and the mathematical model. The results showed good accuracy of the algorithm and mathematical apparatus, which shows reliability of the obtained data. This mathematical model is already used in the noise reduction program of the CT of own design, where it participates as a method of creating a dynamic threshold of noise reduction. At the moment, the algorithm is being processed to work with real data from computer tomography of patients.

The biomass growth yield is the ratio of the newly synthesized substance of growing cells to the amount of the consumed substrate, the source of matter and energy for cell growth. The yield is a characteristic of the efficiency of substrate conversion to cell biomass. The conversion is carried out by the cell metabolism, which is a complete aggregate of biochemical reactions occurring in the cells.

This work newly considers the problem of maximal cell growth yield prediction basing on balances of the whole living cell metabolism and its fragments called as partial metabolisms (PM). The following PM’s are used for the present consideration. During growth on any substrate we consider i) the standard constructive metabolism (SCM) which consists of identical pathways during growth of various organisms on any substrate. SCM starts from several standard compounds (nodal metabolites): glucose, acetyl-CoA 2-oxoglutarate, erythrose-4-phosphate, oxaloacetate, ribose-5- phosphate, 3-phosphoglycerate, phosphoenolpyruvate, and pyruvate, and ii) the full forward metabolism (FM) — the remaining part of the whole metabolism. The first one consumes high-energy bonds (HEB) formed by the second one. In this work we examine a generalized variant of the FM, when the possible presence of extracellular products, as well as the possibilities of both aerobic and anaerobic growth are taken into account. Instead of separate balances of each nodal metabolite formation as it was made in our previous work, this work deals at once with the whole aggregate of these metabolites. This makes the problem solution more compact and requiring a smaller number of biochemical quantities and substantially less computational time. An equation expressing the maximal biomass yield via specific amounts of HEB formed and consumed by the partial metabolisms has been derived. It includes the specific HEB consumption by SCM which is a universal biochemical parameter applicable to the wide range of organisms and growth substrates. To correctly determine this parameter, the full constructive metabolism and its forward part are considered for the growth of cells on glucose as the mostly studied substrate. We used here the found earlier properties of the elemental composition of lipid and lipid-free fractions of cell biomass. Numerical study of the effect of various interrelations between flows via different nodal metabolites has been made. It showed that the requirements of the SCM in high-energy bonds and NAD(P)H are practically constants. The found HEB-to-formed-biomass coefficient is an efficient tool for finding estimates of maximal biomass yield from substrates for which the primary metabolism is known. Calculation of ATP-to-substrate ratio necessary for the yield estimation has been made using the special computer program package, GenMetPath.

Problems of multiple covering ($k$-covering) of a bounded set $G$ with equal circles of a given radius are well known. They are thoroughly studied under the assumption that $G$ is a finite set. There are several papers concerned with studying this problem in the case where $G$ is a connected set. In this paper, we study the problem of minimizing the number of circles that form a $k$-covering, $k \geqslant 1$, provided that $G$ is a bounded convex plane domain.

For the above-mentioned problem, we state a 0-1 linear model, a general integer linear model, and a nonlinear model, imposing a constraint on the minimum distance between the centers of covering circles. The latter constraint is due to the fact that in practice one can place at most one device at each point. We establish necessary and sufficient solvability conditions for the linear models and describe one (easily realizable) variant of these conditions in the case where the covered set $G$ is a rectangle.

We propose some methods for finding an approximate number of circles of a given radius that provide the desired $k$-covering of the set $G$, both with and without constraints on distances between the circles’ centers. We treat the calculated values as approximate upper bounds for the number of circles. We also propose a technique that allows one to get approximate lower bounds for the number of circles that is necessary for providing a $k$-covering of the set $G$. In the general linear model, as distinct from the 0-1 linear model, we require no additional constraint. The difference between the upper and lower bounds for the number of circles characterizes the quality (acceptability) of the constructed $k$-covering.

We state a nonlinear mathematical model for the $k$-covering problem with the above-mentioned constraints imposed on distances between the centers of covering circles. For this model, we propose an algorithm which (in certain cases) allows one to find more exact solutions to covering problems than those calculated from linear models.

For implementing the proposed approach, we have developed computer programs and performed numerical experiments. Results of numerical experiments demonstrate the effectiveness of the method.

A hybrid cluster implies the use of computational devices with radically different architectures. Usually, these are conventional CPU architecture (e.g. x86_64) and GPU architecture (e. g. NVIDIA CUDA). Creating and exploiting such a cluster requires some experience: in order to harness all computational power of the described system and get substantial speedup for computational tasks many factors should be taken into account. These factors consist of hardware characteristics (e.g. network infrastructure, a type of data storage, GPU architecture) as well as software stack (e.g. MPI implementation, GPGPU libraries). So, in order to run scientific applications GPU capabilities, software features, task size and other factors should be considered.

This report discusses opportunities and problems of hybrid computations. Some statistics from tests programs and applications runs will be demonstrated. The main focus of interest is open source applications (e. g. OpenFOAM) that support GPGPU (with some parts rewritten to use GPGPU directly or by replacing libraries).

There are several approaches to organize heterogeneous computations for different GPU architectures out of which CUDA library and OpenCL framework are compared. CUDA library is becoming quite typical for hybrid systems with NVIDIA cards, but OpenCL offers portability opportunities which can be a determinant factor when choosing framework for development. We also put emphasis on multi-GPU systems that are often used to build hybrid clusters. Calculations were performed on a hybrid cluster of SPbU computing center.