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Physics-informed neural network for evaluating pressure drop in arterial stenoses based on simulation data
Computer Research and Modeling, 2026, v. 18, no. 3, pp. 621-641This paper describes a method for generating a synthetic database of stenoses, consisting of 1620 entries. Each entry represents the results of a numerical experiment simulating the three-dimensional flow of a viscous incompressible fluid through a tube with a variable cross-section: pressure drop, mean flow rate, cross-sectionally averaged inlet blood flow velocity, maximum stenosis severity, stenosis length, stenosis asymmetry, tube radius, and Reynolds number. The database was validated by comparison with other models (with elastic walls) and bench experiments, showing a deviation in pressure drops of no more than 4%. The synthetic stenosis database was used to train a physics-informed neural network for the rapid estimation of pressure drop based on four key input parameters: Reynolds number, stenosis length, stenosis severity, and stenosis asymmetry coefficient. The physics-informed aspect was achieved by introducing penalties into the loss function for the absence of a positive pressure drop and for the lack of monotonicity of the pressure drop with respect to the input parameters. The physics-informed neural network demonstrated higher accuracy on hemodynamically significant stenoses when tested on a validation set and on new stenoses not represented in the database. The mean relative error for stenoses with a length of 8 healthy vessel radii was 6% for the physics-informed network and 13% for a classical neural network. The errors for short stenoses with a length of 4 radii were nearly identical: 9.5% for the physics-informed network and 10% for the classical neural network. The developed method for the functional assessment of the hemodynamic significance of stenoses can be used both as a standalone tool for clinical stenosis evaluation and as a component of network blood flow models. The approach becomes most relevant when modeling multi-vessel disease, which is predominant in clinical practice. The key advantage of the method lies in the physical correctness of the results and accuracy comparable to classical modeling, but with significantly lower computational costs.
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[RETRACTED PAPER] Calculational methods for electrophoretic cleavage pattern analysis of DNA
Computer Research and Modeling, 2009, v. 1, no. 3, pp. 287-295Views (last year): 3. Citations: 1 (RSCI).The article was retracted on May 3, 2022 at the request of the authors due to the fact that the data included in the article were published in the article by Nechipurenko Y.D., Golovkin M.V., Nechipurenko D.Yu., Ilyicheva I.A., Panchenko L. .A., Polozov R.V., Grokhovsky S.L. Kharakternye osobennosti rasshchepleniya DNK ul'trazvukom [Characteristic features of DNA cleavage by ultrasound]. Journal of Structural Chemistry, 2009, volume 50, number 5, pages 1045-1052 (in Russian).
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Interaction of cytokine LIF with the lipidic matrix of membranes
Computer Research and Modeling, 2010, v. 2, no. 1, pp. 43-49Integration of LIF protein into the bilayer lipid membrane causes the formation of ion channels. The data on activity of ion channels formed by recombinant protein from mouse and human origin are shown. Also the difference in the effect of LIF protein from eukaryotic and prokaryotic origin is shown.
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Numerical study of traffic flows by the hydrodynamic models
Computer Research and Modeling, 2011, v. 3, no. 4, pp. 389-412Views (last year): 7. Citations: 7 (RSCI).The purpose of this paper is to generalize the macroscopic hydrodynamic vehicular traffic models by using the algorithm for constructing the adequate state equation — dependence the pressure from traffic density by taking into account the real experimental data (possibly using the parametric solutions for model equations). It is proved that this kind of state equation which closed model equations system and obtained from the experimentally observed form of the fundamental diagram — dependence the traffic intensity from its density, completely determines the all properties of the used phenomenological model.
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Computational modeling of a meteor entering atmosphere dense layers using elastoplastic approximation
Computer Research and Modeling, 2013, v. 5, no. 6, pp. 957-967Views (last year): 2. Citations: 3 (RSCI).The article contains results of modeling a meteor entering dense atmosphere layers using Galerkin’s method and smoother particle hydrodynamics. Numerical simulations were run using experimental data gathered for the Chelyabinsk meteor while varying the meteor material characteristics and its orientation when entering the atmosphere.
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Numerical investigation of photoexcited polaron states in water
Computer Research and Modeling, 2014, v. 6, no. 2, pp. 253-261Citations: 1 (RSCI).A method and a complex of computer programs are developed for the numerical simulation of the polaron states excitation process in condensed media. A numerical study of the polaron states formation in water under the action of the ultraviolet range laser irradiation is carried out. Our approach allows to reproduce the experimental data of the hydrated electrons formation. A numerical scheme is presented for the solution of the respective system of nonlinear partial differential equations. Parallel implementation is based on the MPI technique. The numerical results are given in comparison with the experimental data and theoretical estimations.
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Use of URANS approach for determination of temperature fluctuations when mixing triple-jet sodium at different temperatures
Computer Research and Modeling, 2014, v. 6, no. 6, pp. 923-935Views (last year): 2. Citations: 2 (RSCI).The possibility to study temperature fluctuations using URANS approach is studied. The results of numerical simulation of mixing processes for triple-jet sodium at different temperatures are presented. The processes were simulated using FlowVision software system and LMS model for turbulent heat transfer. The analysis and experiment data are compared. Validated was the possibility to determine the energy-carrying frequencies of temperature fluctuations using URANS approach and LMS model when mixing triple-jet sodium at different temperatures.
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Mathematical modeling of the age groups of employed peoples by the example of the southern regions of the Russian Far East
Computer Research and Modeling, 2016, v. 8, no. 5, pp. 787-801Views (last year): 4. Citations: 3 (RSCI).The article focuses on a nonlinear mathematical model that describes the interaction of the different age groups of the employed population. The interactions are treated by analogy with population relationship (competition, discrimination, assistance, oppression, etc). Under interaction of peoples we mean the generalized social and economic mechanisms that cause related changes in the number of employees of different age groups. Three age groups of the employed population are considered. It is young specialists (15–29 years), workers with experience (30–49 years), the employees of pre-retirement and retirement age (50 and older). The estimation of model’s parameters for the southern regions of the Far Eastern Federal District (FEFD) is executed by statistical data. Analysis of model scenarios allows us to conclude the observed number fluctuations of the different ages employees on the background of a stable total employed population may be a consequence of complex interactions between these groups of peoples. Computational experiments with the obtained values of the parameters allowed us to calculate the rate of decline and the aging of the working population and to determine the nature of the interaction between the age groups of employees that are not directly as reflected in the statistics. It was found that in FEFD the employed of 50 years and older are discriminated against by the young workers under 29, employed up to 29 and 30–49 years are in a partnership. It is shown in most developed regions (Primorsky and Khabarovsk Krai) there is “uniform” competition among different age groups of the employed population. For Primorsky Krai we were able to identify the mixing effect dynamics. It is a typical situation for systems in a state of structural adjustment. This effect is reflected in the fact the long cycles of employed population form with a significant decrease in migration inflows of employees 30–49 years. Besides, the change of migration is accompanied by a change of interaction type — from employment discrimination by the oldest of middle generation to discrimination by the middle of older generation. In less developed regions (Amur, Magadan and Jewish Autonomous Regions) there are lower values of migration balance of almost all age groups and discrimination by young workers up 29 years of other age groups and employment discrimination 30–49 years of the older generation.
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Optimization of a hull form for decrease ship resistance to movement
Computer Research and Modeling, 2017, v. 9, no. 1, pp. 57-65Views (last year): 10. Citations: 1 (RSCI).Optimization of hull lines for the minimum resistance to movement is a problem of current interest in ship hydrodynamics. In practice, lines design is still to some extent an art. The usual approaches to decrease the ship resistance are based on the model experiment and/or CFD simulation, following the trial and error method. The paper presents a new method of in-detail hull form design based on the wave-based optimization approach. The method provides systematic variation of the hull geometrical form, which corresponds to alteration of longitudinal distribution of the hull volume, while its vertical volume distribution is fixed or highly controlled. It’s well known from the theoretical studies that the vertical distribution can't be optimized by condition of minimum wave resistance, thus it can be neglected for the optimization procedures. The method efficiency was investigated by application to the foreship of KCS, the well-known test object from the workshop Gothenburg-2000. The variations of the longitudinal distribution of the volume were set on the sectional area curve as finite volume increments and then transferred to the lines plan with the help of special frame transformation methods. The CFD towing simulations were carried out for the initial hull form and the six modified variants. According to the simulation results, examined modifications caused the resistance increments in the range 1.3–6.5 %. Optimization process was underpinned with the respective data analysis based on the new hypothesis, according to which, the resistance increments caused by separate longitudinal segments of hull form meet the principle of superposition. The achieved results, which are presented as the optimum distribution of volume present in the optimized designed hull form, which shows the interesting characteristics that its resistance has decrease by 8.9 % in respect to initial KCS hull form. Visualization of the wave patterns showed an attenuation of the transversal wave components, and the intensification of the diverging wave components.
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Investigation of the relationships of the size and production characteristics of phyto- and zooplankton in the Vistula and Curonian lagoons of the Baltic Sea. Part 1. The statistical analysis of long-term observation data and development of the structure for the mathematical model of the plankton food chain
Computer Research and Modeling, 2017, v. 9, no. 2, pp. 211-246In the paper the statistical relationships between the size and production characteristics of phytoplankton and zooplankton of the Vistula and Curonian lagoons, the Baltic Sea, were investigated. Research phytoplankton and zooplankton within the Russian part of the area of the Vistula and the Curonian lagoon was carried out on the monthly basis (from April to November) within the framework of long-term monitoring program on evaluating of ecological status of the lagoons. The size structure of plankton is the basis for understanding of the development of production processes, mechanisms of formation of the plankton species diversity and functioning of the lagoon ecosystems. As results of the work it was found that the maximum rate of photosynthesis and the integral value of the primary production with a change in cell volume of phytoplankton are changed according to a power law. The result shows that the smaller the size of algal cells in phytoplankton communities the more actively occur metabolism and the more effective they assimilate the solar energy. It is shown that the formation of plankton species diversity in ecosystems of lagoons is closely linked with the size structure of plankton communities and with features of development of the production processes. It is proposed the structure of a spatially homogenous mathematical model of the plankton food chain for the lagoon ecosystems taking into account the size spectrum and the characteristics of phytoplankton and zooplankton. The model parameters are the sizedependent indicators allometrically linked with average volumes of cells and organisms in different ranges of their sizes. In the model the algorithm for changes over time the coefficients of food preferences in the diet of zooplankton was proposed. Developed the size-dependent mathematical model of aquatic ecosystems allows to consider the impact of turbulent exchange on the size structure and temporal dynamics of the plankton food chain of the Vistula and Curonian lagoons. The model can be used to study the different regimes of dynamic behavior of plankton systems depending on the changes in the values of its parameters and external influences, as well as to quantify the redistribution of matter flows in ecosystems of the lagoons.
Keywords: ecosystem, nutrients, phytoplankton, zooplankton, plankton detritus, size structure, the maximum rate of photosynthesis, integrated primary production, zooplankton production, allometric scaling, Shannon index of species diversity, mathematical modeling, ecological simulation model, turbulent exchange.Views (last year): 9.
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