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Population waves and their bifurcations in a model “active predator – passive prey”
Computer Research and Modeling, 2020, v. 12, no. 4, pp. 831-843Our purpose is to study the spatio-temporal population wave behavior observed in the predator-prey system. It is assumed that predators move both directionally and randomly, and prey spread only diffusely. The model does not take into account demographic processes in the predator population; it’s total number is constant and is a parameter. The variables of the model are the prey and predator densities and the predator speed, which are connected by a system of three reaction – diffusion – advection equations. The system is considered on an annular range, that is the periodic conditions are set at the boundaries of the interval. We have studied the bifurcations of wave modes arising in the system when two parameters are changed — the total number of predators and their taxis acceleration coefficient.
The main research method is a numerical analysis. The spatial approximation of the problem in partial derivatives is performed by the finite difference method. Integration of the obtained system of ordinary differential equations in time is carried out by the Runge –Kutta method. The construction of the Poincare map, calculation of Lyapunov exponents, and Fourier analysis are used for a qualitative analysis of dynamic regimes.
It is shown that, population waves can arise as a result of existence of directional movement of predators. The population dynamics in the system changes qualitatively as the total predator number increases. А stationary homogeneous regime is stable at low value of parameter, then it is replaced by self-oscillations in the form of traveling waves. The waveform becomes more complicated as the bifurcation parameter increases; its complexity occurs due to an increase in the number of temporal vibrational modes. A large taxis acceleration coefficient leads to the possibility of a transition from multi-frequency to chaotic and hyperchaotic population waves. A stationary regime without preys becomes stable with a large number of predators.
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Physical analysis and mathematical modeling of the parameters of explosion region produced in a rarefied ionosphere
Computer Research and Modeling, 2022, v. 14, no. 4, pp. 817-833The paper presents a physical and numerical analysis of the dynamics and radiation of explosion products formed during the Russian-American experiment in the ionosphere using an explosive generator based on hexogen (RDX) and trinitrotoluene (TNT). The main attention is paid to the radiation of the perturbed region and the dynamics of the products of explosion (PE). The detailed chemical composition of the explosion products is analyzed and the initial concentrations of the most important molecules capable of emitting in the infrared range of the spectrum are determined, and their radiative constants are given. The initial temperature of the explosion products and the adiabatic exponent are determined. The nature of the interpenetration of atoms and molecules of a highly rarefied ionosphere into a spherically expanding cloud of products is analyzed. An approximate mathematical model of the dynamics of explosion products under conditions of mixing rarefied ionospheric air with them has been developed and the main thermodynamic characteristics of the system have been calculated. It is shown that for a time of 0,3–3 sec there is a significant increase in the temperature of the scattering mixture as a result of its deceleration. In the problem under consideration the explosion products and the background gas are separated by a contact boundary. To solve this two-region gas dynamic problem a numerical algorithm based on the Lagrangian approach was developed. It was necessary to fulfill special conditions at the contact boundary during its movement in a stationary gas. In this case there are certain difficulties in describing the parameters of the explosion products near the contact boundary which is associated with a large difference in the size of the mass cells of the explosion products and the background due to a density difference of 13 orders of magnitude. To reduce the calculation time of this problem an irregular calculation grid was used in the area of explosion products. Calculations were performed with different adiabatic exponents. The most important result is temperature. It is in good agreement with the results obtained by the method that approximately takes into account interpenetration. The time behavior of the IR emission coefficients of active molecules in a wide range of the spectrum is obtained. This behavior is qualitatively consistent with experiments for the IR glow of flying explosion products.
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NLP-based automated compliance checking of data processing agreements against General Data Protection Regulation
Computer Research and Modeling, 2024, v. 16, no. 7, pp. 1667-1685As it stands in the contemporary world, compliance with regulations concerning data protection such as GDPR is central to organizations. Another important issue analysis identified is the fact that compliance is hampered by the fact that legal documents are often complex and that regulations are ever changing. This paper aims to describe the ways in which NLP aids in keeping GDPR compliance effortless through automated scanning for compliance, evaluating privacy policies, and increasing the level of transparency. The work does not only limit to exploring the application of NLP for dealing with the privacy policies and facilitate better understanding of the third-party data sharing but also proceed to perform the preliminary studies to evaluate the difference of several NLP models. They implement and execute the models to distinguish the one that performs the best based on the efficiency and speed at which it automates the process of compliance verification and analyzing the privacy policy. Moreover, some of the topics discussed in the research deal with the possibility of using automatic tools and data analysis to GDPR, for instance, generation of the machine readable models that assist in evaluation of compliance. Among the evaluated models from our studies, SBERT performed best at the policy level with an accuracy of 0.57, precision of 0.78, recall of 0.83, and F1-score of 0.80. BERT showed the highest performance at the sentence level, achieving an accuracy of 0.63, precision of 0.70, recall of 0.50, and F1-score of 0.55. Therefore, this paper emphasizes the importance of NLP to help organizations overcome the difficulties of GDPR compliance, create a roadmap to a more client-oriented data protection regime. In this regard, by comparing preliminary studies done in the test and showing the performance of the better model, it helps enhance the measures taken in compliance and fosters the defense of individual rights in the cyberspace.
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Simulation of laser polishing for fused quartz
Computer Research and Modeling, 2026, v. 18, no. 2, pp. 399-421Laser polishing is a promising technology for the finishing of fused quartz (fused silica or quartz glass) products, enabling the removal of subsurface defects induced by mechanical processing. However, the complexity and nonlinearity of the physical processes occurring during laser irradiation complicate the selection of optimal technological parameters. The present paper aims to develop, comparatively analyze, and apply high-precision predictive models for forecasting and optimizing the key performance indicators of the laser polishing process for quartz glass. A verified finite element model implemented in the ANSYS software environment produced a dataset of temperature and stress fields for various combinations of process parameters. This dataset was used to develop and validate four types of predictive models: Polynomial Regression, a Fuzzy Logic System, an Adaptive Neuro-Fuzzy Inference System (ANFIS), and a Multilayer Perceptron (MLP) neural network. The models’ quality was evaluated on a test set using the statistical metrics MAE, RMSE, MAPE, $R^2$, and $R^2_{Adj}$. A comparative analysis of the models revealed the significant superiority of the MLP neural network, which demonstrated the highest prediction accuracy for all output parameters, achieving Adjusted $R^2$ ($R^2_{Adj}$.) values above 0.97 and a Mean Absolute Percentage Error (MAPE) in the range of 0.7–2.8%. This model was effectively utilized as a surrogate function in combination with a genetic algorithm to successfully identify the optimal process parameters. The constructed MLP neural network model functions as a reliable and high-precision tool, facilitating both prediction and the optimization of fused quartz polishing outcomes using a CO2 laser. This approach effectively approximates the complex nonlinear dependencies inherent in the process and can serve as a foundation for developing intelligent control and optimization systems for this technology.
Keywords: laser polishing, ANSYS, modeling, regression, fuzzy logic system, ANFIS, neural network model, optimization. -
Numerical simulation of corium cooling driven by natural convection in case of in-vessel retention and time-dependent heat generation
Computer Research and Modeling, 2021, v. 13, no. 4, pp. 807-822Represented study considers numerical simulation of corium cooling driven by natural convection within a horizontal hemicylindrical cavity, boundaries of which are assumed isothermal. Corium is a melt of ceramic fuel of a nuclear reactor and oxides of construction materials.
Corium cooling is a process occurring during severe accident associated with core melt. According to invessel retention conception, the accident may be restrained and localized, if the corium is contained within the vessel, only if it is cooled externally. This conception has a clear advantage over the melt trap, it can be implemented at already operating nuclear power plants. Thereby proper numerical analysis of the corium cooling has become such a relevant area of studies.
In the research, we assume the corium is contained within a horizontal semitube. The corium initially has temperature of the walls. In spite of reactor shutdown, the corium still generates heat owing to radioactive decays, and the amount of heat released decreases with time accordingly to Way–Wigner formula. The system of equations in Boussinesq approximation including momentum equation, continuity equation and energy equation, describes the natural convection within the cavity. Convective flows are taken to be laminar and two-dimensional.
The boundary-value problem of mathematical physics is formulated using the non-dimensional nonprimitive variables «stream function – vorticity». The obtained differential equations are solved numerically using the finite difference method and locally one-dimensional Samarskii scheme for the equations of parabolic type.
As a result of the present research, we have obtained the time behavior of mean Nusselt number at top and bottom walls for Rayleigh number ranged from 103 to 106. These mentioned dependences have been analyzed for various dimensionless operation periods before the accident. Investigations have been performed using streamlines and isotherms as well as time dependences for convective flow and heat transfer rates.
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An Algorithm for Simulating the Banking Network System and Its Application for Analyzing Macroprudential Policy
Computer Research and Modeling, 2021, v. 13, no. 6, pp. 1275-1289Modeling banking systems using a network approach has received growing attention in recent years. One of the notable models is that developed by Iori et al, who proposed a banking system model for analyzing systemic risks in interbank networks. The model is built based on the simple dynamics of several bank balance sheet variables such as deposit, equity, loan, liquid asset, and interbank lending (or borrowing) in the form of difference equations. Each bank faces random shocks in deposits and loans. The balance sheet is updated at the beginning or end of each period. In the model, banks are grouped into either potential lenders or borrowers. The potential borrowers are those that have lack of liquidity and the potential lenders are those which have excess liquids after dividend payment and channeling new investment. The borrowers and the lenders are connected through the interbank market. Those borrowers have some percentage of linkage to random potential lenders for borrowing funds to maintain their safety net of the liquidity. If the demand for borrowing funds can meet the supply of excess liquids, then the borrower bank survives. If not, they are deemed to be in default and will be removed from the banking system. However, in their paper, most part of the interbank borrowing-lending mechanism is described qualitatively rather than by detailed mathematical or computational analysis. Therefore, in this paper, we enhance the mathematical parts of borrowing-lending in the interbank market and present an algorithm for simulating the model. We also perform some simulations to analyze the effects of the model’s parameters on banking stability using the number of surviving banks as the measure. We apply this technique to analyze the effects of a macroprudential policy called loan-to-deposit ratio based reserve requirement for banking stability.
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Mathematical features of individual dosimetric planning of radioiodotherapy based on pharmacokinetic modeling
Computer Research and Modeling, 2024, v. 16, no. 3, pp. 773-784When determining therapeutic absorbed doses in the process of radioiodine therapy, the method of individual dosimetric planning is increasingly used in Russian medicine. However, for the successful implementation of this method, it is necessary to have appropriate software that allows modeling the pharmacokinetics of radioiodine in the patient’s body and calculate the necessary therapeutic activity of a radiopharmaceutical drug to achieve the planned therapeutic absorbed dose in the thyroid gland.
Purpose of the work: development of a software package for pharmacokinetic modeling and calculation of individual absorbed doses in radioiodine therapy based on a five-chamber model of radioiodine kinetics using two mathematical optimization methods. The work is based on the principles and methods of RFLP pharmacokinetics (chamber modeling). To find the minimum of the residual functional in identifying the values of the transport constants of the model, the Hook – Jeeves method and the simulated annealing method were used. Calculation of dosimetric characteristics and administered therapeutic activity is based on the method of calculating absorbed doses using the functions of radioiodine activity in the chambers found during modeling. To identify the parameters of the model, the results of radiometry of the thyroid gland and urine of patients with radioiodine introduced into the body were used.
A software package for modeling the kinetics of radioiodine during its oral intake has been developed. For patients with diffuse toxic goiter, the transport constants of the model were identified and individual pharmacokinetic and dosimetric characteristics (elimination half-lives, maximum thyroid activity and time to reach it, absorbed doses to critical organs and tissues, administered therapeutic activity) were calculated. The activity-time relationships for all cameras in the model are obtained and analyzed. A comparative analysis of the calculated pharmacokinetic and dosimetric characteristics calculated using two mathematical optimization methods was performed. Evaluation completed the stunning-effect and its contribution to the errors in calculating absorbed doses. From a comparative analysis of the pharmacokinetic and dosimetric characteristics calculated in the framework of two optimization methods, it follows that the use of a more complex mathematical method for simulating annealing in a software package does not lead to significant changes in the values of the characteristics compared to the simple Hook – Jeeves method. Errors in calculating absorbed doses in the framework of these mathematical optimization methods do not exceed the spread of absorbed dose values from the stunning-effect.
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Analysis of the rate of electron transport through photosynthetic cytochrome $b_6 f$ complex
Computer Research and Modeling, 2024, v. 16, no. 4, pp. 997-1022We consider an approach based on linear algebra methods to analyze the rate of electron transport through the cytochrome $b_6 f$ complex. In the proposed approach, the dependence of the quasi-stationary electron flux through the complex on the degree of reduction of pools of mobile electron carriers is considered a response function characterizing this process. We have developed software in the Python programming language that allows us to construct the master equation for the complex according to the scheme of elementary reactions and calculate quasi-stationary electron transport rates through the complex and the dynamics of their changes during the transition process. The calculations are performed in multithreaded mode, which makes it possible to efficiently use the resources of modern computing systems and to obtain data on the functioning of the complex in a wide range of parameters in a relatively short time. The proposed approach can be easily adapted for the analysis of electron transport in other components of the photosynthetic and respiratory electron-transport chain, as well as other processes in multienzyme complexes containing several reaction centers. Cryo-electron microscopy and redox titration data were used to parameterize the model of cytochrome $b_6 f$ complex. We obtained dependences of the quasi-stationary rate of plastocyanin reduction and plastoquinone oxidation on the degree of reduction of pools of mobile electron carriers and analyzed the dynamics of rate changes in response to changes in the redox state of the plastoquinone pool. The modeling results are in good agreement with the available experimental data.
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Enhancing DevSecOps with continuous security requirements analysis and testing
Computer Research and Modeling, 2024, v. 16, no. 7, pp. 1687-1702The fast-paced environment of DevSecOps requires integrating security at every stage of software development to ensure secure, compliant applications. Traditional methods of security testing, often performed late in the development cycle, are insufficient to address the unique challenges of continuous integration and continuous deployment (CI/CD) pipelines, particularly in complex, high-stakes sectors such as industrial automation. In this paper, we propose an approach that automates the analysis and testing of security requirements by embedding requirements verification into the CI/CD pipeline. Our method employs the ARQAN tool to map high-level security requirements to Security Technical Implementation Guides (STIGs) using semantic search, and RQCODE to formalize these requirements as code, providing testable and enforceable security guidelines.We implemented ARQAN and RQCODE within a CI/CD framework, integrating them with GitHub Actions for realtime security checks and automated compliance verification. Our approach supports established security standards like IEC 62443 and automates security assessment starting from the planning phase, enhancing the traceability and consistency of security practices throughout the pipeline. Evaluation of this approach in collaboration with an industrial automation company shows that it effectively covers critical security requirements, achieving automated compliance for 66.15% of STIG guidelines relevant to the Windows 10 platform. Feedback from industry practitioners further underscores its practicality, as 85% of security requirements mapped to concrete STIG recommendations, with 62% of these requirements having matching testable implementations in RQCODE. This evaluation highlights the approach’s potential to shift security validation earlier in the development process, contributing to a more resilient and secure DevSecOps lifecycle.
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Computer modeling of the gross regional product dynamics: a comparative analysis of neural network models
Computer Research and Modeling, 2025, v. 17, no. 6, pp. 1219-1236Analysis of regional economic indicators plays a crucial role in management and development planning, with Gross Regional Product (GRP) serving as one of the key indicators of economic activity. The application of artificial intelligence, including neural network technologies, enables significant improvements in the accuracy and reliability of forecasts of economic processes. This study compares three neural network algorithm models for predicting the GRP of a typical region of the Russian Federation — the Udmurt Republic — based on time series data from 2000 to 2023. The selected models include a neural network with the Bat Algorithm (BA-LSTM), a neural network model based on backpropagation error optimized with a Genetic Algorithm (GA-BPNN), and a neural network model of Elman optimized using the Particle Swarm Optimization algorithm (PSO-Elman). The research involved stages of neural network modeling such as data preprocessing, training model, and comparative analysis based on accuracy and forecast quality metrics. This approach allows for evaluating the advantages and limitations of each model in the context of GRP forecasting, as well as identifying the most promising directions for further research. The utilization of modern neural network methods opens new opportunities for automating regional economic analysis and improving the quality of forecast assessments, which is especially relevant when data are limited and for rapid decision-making. The study uses factors such as the amount of production capital, the average annual number of labor resources, the share of high-tech and knowledge-intensive industries in GRP, and an inflation indicator as input data for predicting GRP. The high accuracy of the predictions achieved by including these factors in the neural network models confirms the strong correlation between these factors and GRP. The results demonstrate the exceptional accuracy of the BA-LSTM neural network model on validation data: the coefficient of determination was 0.82, and the mean absolute percentage error was 4.19%. The high performance and reliability of this model confirm its capacity to predict effectively the dynamics of the GRP. During the forecast period up to 2030, the Udmurt Republic is expected to experience an annual increase in Gross Regional Product (GRP) of +4.6% in current prices or +2.5% in comparable 2023 prices. By 2030, the GRP is projected to reach 1264.5 billion rubles.
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