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An investigation of an action potential propagation in vascular plant using FitzHugh-Nagumo model
Computer Research and Modeling, 2011, v. 3, no. 1, pp. 77-84Views (last year): 3. Citations: 4 (RSCI).A two-dimensional system of excitable cells, describing by the FitzHugh-Nagumo model, has been used for a theoretical investigation of an action potential propagation (AP) in vascular plant tissues. It is shown that growth of electrical conductivity between cells increases the AP generation threshold and its propagation velocity in the homogeneous system, which has been formed by equal elements. The plant symplast has been
described by the heterogeneous system, including elements with low electrical conductivity, which simulate parenchyma cells, and elements with high electrical conductivity, which simulate sieve elements. Analysis of this system shows that the threshold of the AP generation is similar with this threshold in the homogeneous system
with low electrical conductivity; the velocity of the AP propagation is faster than one in this system. -
Effect of the surface on characteristics of amorphization Ni-Ag system
Computer Research and Modeling, 2014, v. 6, no. 2, pp. 263-269Views (last year): 1. Citations: 1 (RSCI).Molecular dynamics simulation using the embedded-atom method is applied to study the structural evolution of the particle diameter of 40 Å during the quenching process. Was carried comparative analysis of the structural reconstruction for the particle and the bulk models. Was a reduction in temperature of the beginning and end of the transformation of the particle. In formation of a percolation cluster from interpenetrating and contacting icosahedrons, for model of the particle, it is involved for 10 percent of atoms more, than for model of a bulk.
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Topological microstructure analysis of the TIP4P-EW water model
Computer Research and Modeling, 2014, v. 6, no. 3, pp. 415-426Views (last year): 1. Citations: 1 (RSCI).Molecular dynamics (MD) simulations of rigid water model TIP4P-EW at ambient conditions were carried out. Delaunay’s simplexes were considered as structural elements of liquid water. Topological criterion which allows to identify the water microstructure in snapshot of MD cell was used to allocate its dense part. Geometrical analysis of water Delaunay’s simplexes indicates their strong flatness in comparison with a regular tetrahedron that is fundamentally different from the results for dense part of simple liquids. The statistics of TIP4P-EW water clusters was investigated depending on their cardinality and connectivity. It is similar to the statistics for simple liquids and the structure of this dense part is also a fractal surface consisting of the free edges of the Delaunay’s simplexes.
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Percolation modeling of hydraulic hysteresis in a porous media
Computer Research and Modeling, 2014, v. 6, no. 4, pp. 543-558Views (last year): 3. Citations: 1 (RSCI).In this paper we consider various models of hydraulic hysteresis in invasive mercury porosimetry. For simulating the hydraulic hysteresis is used isotropic site percolation on three-dimensional square lattices with $(1,\,\pi)$-neighborhood. The relationship between the percolation model parameters and invasive porosimetry data is studied phenomenologically. The implementation of the percolation model is based on libraries SPSL and SECP, released under license GNU GPL-3 using the free programming language R.
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Modeling of anisotropic strength using scalar damage parameter
Computer Research and Modeling, 2014, v. 6, no. 6, pp. 937-942Views (last year): 1.The paper discusses the possibility of modeling the strength anisotropy of layered elastic medium using a scalar damage parameter. Thermodynamically consistent constitutive equations are formulated. Using SIMULIA / Abaqus we numerically simulated the stretching and compression of the samples. The results of calculation using the proposed model are compared with the known experimental data from the literature and the predictions of traditional models.
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Peculiar features of numerical modeling of the modified spectrometer magnet field
Computer Research and Modeling, 2015, v. 7, no. 1, pp. 93-105Citations: 1 (RSCI).In this work, we propose a method of the numerical solution of the magnetostatic problem for domains with boundaries containing corners. With the help of this numerical method, the magnetic systems of rectangular configuration were simulated with high accuracy. In particular, the calculations of some modifications of the magnetic system SP-40 used in the NIS JINR experimental installation, are presented. The basic feature of such a magnet is a rectangular aperture, hence, the area in which the boundary-value problem is solved, has a smooth border everywhere, except for a finite number of angular points in the vicinity of which the border is formed by crossing two smooth curves. In such cases the solution to the problem or derivatives of the solution can have a special feature. A behavior of the magnetic field in the vicinity of an angular point is investigated, and the configuration of the magnet was chosen numerically. The width of the area of homogeneity of the magnetic field increased from 0.5 m up to 1.0 m, i. e. twice.
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Effect of shape and sizes of a local heat source on convective heat transfer in a square cavity
Computer Research and Modeling, 2015, v. 7, no. 2, pp. 271-280Views (last year): 5. Citations: 7 (RSCI).Numerical analysis of the effects of the local heat source shape on transient natural convection in a square enclosure has been carried out. The local heat source has rectangular, triangular and trapezoidal shape. The boundary value problem formulated in the dimensionless variables such as stream function, vorticity and temperature by using the Boussinesq approximation has been solved by means of finite difference method. Distributions of streamlines and isotherms and time dependences for the average Nusselt number along the heat source surface in a wide range of governing parameters have been obtained.
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Construction of adaptive mesh in the domain with boundary «corner point» of ferromagnetic in the numerical simulation of magnetic systems
Computer Research and Modeling, 2016, v. 8, no. 1, pp. 89-99Views (last year): 2.At numerical solving of the boundary-value problem of magnetostatic in a domain with a boundary corner point, a question of accuracy of the obtained solution near the corner point of ferromagnetic arises [Zhidkov, Perepelkin, 2001]. Near the corner point an essential growth of the module of the magnetic field can take place, which leads to the necessity of constructing special numerical algorithms when solving the boundary-value problem. This work represents an algorithm of constructing an adaptive mesh in the domain with a boundary corner point of ferromagnetic taking into account the character of behaviour of the solution of the boundary-value problem. An example of calculating a model problem in the domain containing a corner point is given.
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A.S. Komarov’s publications about cellular automata modelling of the population-ontogenetic development in plants: a review
Computer Research and Modeling, 2016, v. 8, no. 2, pp. 285-295The possibilities of cellular automata simulation applied to herbs and dwarf shrubs are described. Basicprinciples of discrete description of the ontogenesis of plants on which the mathematical modeling based are presents. The review discusses the main research results obtained with the use of models that revealing the patterns of functioning of populations and communities. The CAMPUS model and the results of computer experiment to study the growth of two clones of lingonberry with different geometry of the shoots are described. The paper is dedicated to the works of the founder of the direction of prof. A. S. Komarov. A list of his major publications on this subject is given.
Keywords: computer models, individual-based approach.Views (last year): 2. Citations: 6 (RSCI). -
Numerical simulation of air cooling the tank to desublimate components of the gas mixture
Computer Research and Modeling, 2016, v. 8, no. 3, pp. 521-529Views (last year): 3. Citations: 1 (RSCI).For the production of purified final product in chemical engineering used the process of desublimation. For this purpose, the tank is cooled by liquid nitrogen or cold air. The mixture of gases flows inside the tank and is cooled to the condensation or desublimation temperature some components of the gas mixture. The condensed components are deposited on the walls of the tank. The article presents a mathematical model to calculate the cooling air tanks for desublimation of vapours. A mathematical model based on equations of gas dynamics and describes the movement of cooled air in the duct and the heat exchanger with heat exchange and friction. The heat of the phase transition is taken into account in the boundary condition for the heat equation by setting the heat flux. Heat transfer in the walls of the pipe and in the tank wall is described by the nonstationary heat conduction equations. The solution of the system of equations is carried out numerically. The equations of gas dynamics are solved by the method of S. K. Godunov. The heat equation are solved by an implicit finite difference scheme. The article presents the results of calculations of the cooling of two successively installed tanks. The initial temperature of the tanks is equal to 298 K. Cold air flows through the tubing, through the heat exchanger of the first tank, then through conduit to the heat exchanger second tank. During the 20 minutes of tank cool down to operating temperature. The temperature of the walls of the tanks differs from the air temperature not more than 1 degree. The flow of cooling air allows to maintain constant temperature of the walls of the tank in the process of desublimation components from a gas mixture. The results of analytical evaluation of the time of cooling tank and temperature difference between the tank walls and air with the vapor desublimation. Analytical assessment is based on determining the time of heat relaxation temperature of the tank walls. The results of evaluations are satisfactorily coincide with the results of calculations by the present model. The proposed approach allows calculating the cooling tanks with a flow of cold air supplied via the pipeline system.
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