Результаты поиска по 'simulations':
Найдено статей: 382
  1. Yakushevich L.V.
    Electronic analogue of DNA
    Computer Research and Modeling, 2017, v. 9, no. 5, pp. 789-798

    It is known that the internal mobility of DNA molecules plays an important role in the functioning of these molecules. This explains the great interest of researchers in studying the internal dynamics of DNA. Complexity, laboriousness and high cost of research in this field stimulate the search and creation of simpler physical analogues, convenient for simulating the various dynamic regimes possible in DNA. One of the directions of such a search is connected with the use of a mechanical analogue of DNA — a chain of coupled pendulums. In this model, pendulums imitate nitrous bases, horizontal thread on which pendulums are suspended, simulates a sugarphosphate chain, and gravitational field simulates a field induced by a second strand of DNA. Simplicity and visibility are the main advantages of the mechanical analogue. However, the model becomes too cumbersome in cases where it is necessary to simulate long (more than a thousand base pairs) DNA sequences. Another direction is associated with the use of an electronic analogue of the DNA molecule, which has no shortcomings of the mechanical model. In this paper, we investigate the possibility of using the Josephson line as an electronic analogue. We calculated the coefficients of the direct and indirect transformations for the simple case of a homogeneous, synthetic DNA, the sequence of which contains only adenines. The internal mobility of the DNA molecule was modeled by the sine-Gordon equation for angular vibrations of nitrous bases belonging to one of the two polynucleotide chains of DNA. The second polynucleotide chain was modeled as a certain average field in which these oscillations occur. We obtained the transformation, allowing the transition from DNA to an electronic analog in two ways. The first includes two stages: (1) the transition from DNA to the mechanical analogue (a chain of coupled pendulums) and (2) the transition from the mechanical analogue to the electronic one (the Josephson line). The second way is direct. It includes only one stage — a direct transition from DNA to the electronic analogue.

    Views (last year): 9.
  2. Nikonov E.G., Pavlus M., Popovičová M.
    Molecular-dynamic simulation of water vapor interaction with suffering pores of the cylindrical type
    Computer Research and Modeling, 2019, v. 11, no. 3, pp. 493-501

    Theoretical and experimental investigations of water vapor interaction with porous materials are carried out both at the macro level and at the micro level. At the macro level, the influence of the arrangement structure of individual pores on the processes of water vapor interaction with porous material as a continuous medium is studied. At the micro level, it is very interesting to investigate the dependence of the characteristics of the water vapor interaction with porous media on the geometry and dimensions of the individual pore.

    In this paper, a study was carried out by means of mathematical modelling of the processes of water vapor interaction with suffering pore of the cylindrical type. The calculations were performed using a model of a hybrid type combining a molecular-dynamic and a macro-diffusion approach for describing water vapor interaction with an individual pore. The processes of evolution to the state of thermodynamic equilibrium of macroscopic characteristics of the system such as temperature, density, and pressure, depending on external conditions with respect to pore, were explored. The dependence of the evolution parameters on the distribution of the diffusion coefficient in the pore, obtained as a result of molecular dynamics modelling, is examined. The relevance of these studies is due to the fact that all methods and programs used for the modelling of the moisture and heat conductivity are based on the use of transport equations in a porous material as a continuous medium with known values of the transport coefficients, which are usually obtained experimentally.

    Views (last year): 9.
  3. Popov V.S., Popova A.A.
    Modeling of a channel wall interaction with an end seal flexibly restrained at the edge
    Computer Research and Modeling, 2020, v. 12, no. 2, pp. 387-400

    The paper proposes a new mathematical model to study the interaction dynamics of the longitudinal wall of a narrow channel with its end seal. The end seal was considered as the edge wall on a spring, i.e. spring-mass system. These walls interaction occurs via a viscous liquid filling the narrow channel; thus required the formulation and solution of the hydroelasticity problem. However, this problem has not been previously studied. The problem consists of the Navier–Stokes equations, the continuity equation, the edge wall dynamics equation, and the corresponding boundary conditions. Two cases of fluid motion in a narrow channel with parallel walls were studied. In the first case, we assumed the liquid motion as the creeping one, and in the second case as the laminar, taking into account the motion inertia. The hydroelasticty problem solution made it possible to determine the distribution laws of velocities and pressure in the liquid layer, as well as the motion law of the edge wall. It is shown that during creeping flow, the liquid physical properties and the channel geometric dimensions completely determine the damping in the considered oscillatory system. Both the end wall velocity and the longitudinal wall velocity affect the damping properties of the liquid layer. If the fluid motion inertia forces were taken into account, their influence on the edge wall vibrations was revealed, which manifested itself in the form of two added masses in the equation of its motion. The added masses and damping coefficients of the liquid layer due to the joint consideration of the liquid layer inertia and its viscosity were determined. The frequency and phase responses of the edge wall were constructed for the regime of steady-state harmonic oscillations. The simulation showed that taking into account the fluid layer inertia and its damping properties leads to a shift in the resonant frequencies to the low-frequency region and an increase in the oscillation amplitudes of the edge wall.

  4. Vasiliev E.V., Perzhu A.V., Korol A.O., Kapitan D.Y., Rubin A.E., Soldatov K.S., Kapitan V.U.
    Numerical simulation of two-dimensional magnetic skyrmion structures
    Computer Research and Modeling, 2020, v. 12, no. 5, pp. 1051-1061

    Magnetic systems, in which due to competition between the direct Heisenberg exchange and the Dzyaloshinskii –Moriya interaction, magnetic vortex structures — skyrmions appear, were studied using the Metropolis algorithm.

    The conditions for the nucleation and stable existence of magnetic skyrmions in two-dimensional magnetic films in the frame of the classical Heisenberg model were considered in the article. A thermal stability of skyrmions in a magnetic film was studied. The processes of the formation of various states in the system at different values of external magnetic fields were considered, various phases into which the Heisenberg spin system passes were recognized. The authors identified seven phases: paramagnetic, spiral, labyrinth, spiralskyrmion, skyrmion, skyrmion-ferromagnetic and ferromagnetic phases, a detailed analysis of the configurations is given in the article.

    Two phase diagrams were plotted: the first diagram shows the behavior of the system at a constant $D$ depending on the values of the external magnetic field and temperature $(T, B)$, the second one shows the change of the system configurations at a constant temperature $T$ depending on the magnitude of the Dzyaloshinskii – Moriya interaction and external magnetic field: $(D, B)$.

    The data from these numerical experiments will be used in further studies to determine the model parameters of the system for the formation of a stable skyrmion state and to develop methods for controlling skyrmions in a magnetic film.

  5. Bulatov A.A., Syssoev A.A., Iudin D.I.
    Simulation of lightning initiation on the basis of dynamical grap
    Computer Research and Modeling, 2021, v. 13, no. 1, pp. 125-147

    Despite numerous achievements of modern science the problem of lightning initiation in an electrodeless thundercloud, the maximum electric field strength inside which is approximately an order of magnitude lower than the dielectric strength of air, remains unsolved. Although there is no doubt that discharge activity begins with the appearance of positive streamers, which can develop under approximately half the threshold electric field as compared to negative ones, it remains unexplored how cold weakly conducting streamer systems unite in a joint hot well-conducting leader channel capable of self-propagation due to effective polarization in a relatively small external field. In this study, we present a self-organizing transport model which is applied to the case of electric discharge tree formation in a thundercloud. So, the model is aimed at numerical simulation of the initial stage of lightning discharge development. Among the innovative features of the model are the absence of grid spacing, high spatiotemporal resolution, and consideration of temporal evolution of electrical parameters of transport channels. The model takes into account the widely known asymmetry between threshold fields needed for positive and negative streamers development. In our model, the resulting well-conducting leader channel forms due to collective effect of combining the currents of tens of thousands of interacting streamer channels each of which initially has negligible conductivity and temperature that does not differ from the ambient one. The model bipolar tree is a directed graph (it has both positive and negative parts). It has morphological and electrodynamic characteristics which are intermediate between laboratory long spark and developed lightning. The model has universal character which allows to use it in other tasks related to the study of transport (in the broad sense of the word) networks.

  6. Umavovskiy A.V.
    Data-driven simulation of a two-phase flow in heterogenous porous media
    Computer Research and Modeling, 2021, v. 13, no. 4, pp. 779-792

    The numerical methods used to simulate the evolution of hydrodynamic systems require the considerable use of computational resources thus limiting the number of possible simulations. The data-driven simulation technique is one promising approach to the development of heuristic models, which may speed up the study of such models. In this approach, machine learning methods are used to tune the weights of an artificial neural network that predicts the state of a physical system at a given point in time based on initial conditions. This article describes an original neural network architecture and a novel multi-stage training procedure which create a heuristic model of a two-phase flow in a heterogeneous porous medium. The neural network-based model predicts the states of the grid cells at an arbitrary timestep (within the known constraints), taking in only the initial conditions: the properties of the heterogeneous permeability of the medium and the location of sources and sinks. The proposed model requires orders of magnitude less processor time in comparison with the classical numerical method, which served as a criterion for evaluating the effectiveness of the trained model. The proposed architecture includes a number of subnets trained in various combinations on several datasets. The techniques of adversarial training and weight transfer are utilized.

  7. Kashchenko N.M., Ishanov S.A., Zubkov E.V.
    Numerical model of transport in problems of instabilities of the Earth’s low-latitude ionosphere using a two-dimensional monotonized Z-scheme
    Computer Research and Modeling, 2021, v. 13, no. 5, pp. 1011-1023

    The aim of the work is to study a monotone finite-difference scheme of the second order of accuracy, created on the basis of a generalization of the one-dimensional Z-scheme. The study was carried out for model equations of the transfer of an incompressible medium. The paper describes a two-dimensional generalization of the Z-scheme with nonlinear correction, using instead of streams oblique differences containing values from different time layers. The monotonicity of the obtained nonlinear scheme is verified numerically for the limit functions of two types, both for smooth solutions and for nonsmooth solutions, and numerical estimates of the order of accuracy of the constructed scheme are obtained.

    The constructed scheme is absolutely stable, but it loses the property of monotony when the Courant step is exceeded. A distinctive feature of the proposed finite-difference scheme is the minimality of its template. The constructed numerical scheme is intended for models of plasma instabilities of various scales in the low-latitude ionospheric plasma of the Earth. One of the real problems in the solution of which such equations arise is the numerical simulation of highly nonstationary medium-scale processes in the earth’s ionosphere under conditions of the appearance of the Rayleigh – Taylor instability and plasma structures with smaller scales, the generation mechanisms of which are instabilities of other types, which leads to the phenomenon F-scattering. Due to the fact that the transfer processes in the ionospheric plasma are controlled by the magnetic field, it is assumed that the plasma incompressibility condition is fulfilled in the direction transverse to the magnetic field.

  8. Basaeva E.K., Kamenetsky E.S., Khosaeva Z.K.
    Assessment of the elite–people interaction in post-soviet countries using the Bayesian approach
    Computer Research and Modeling, 2021, v. 13, no. 6, pp. 1233-1247

    A previously developed model that describes the dynamics of social tension in a society divided into two groups: the elite and the people was considered. This model took into account the impact of economic situation changes and the elite–people interaction. The model has been modified by including in the equation describing the tension of the people, a term that takes into account the adaptation of the people to the current situation.

    The model coefficients estimation is an important task, the solution of which allows obtaining information about the nature of the interaction between elite and people. We believe that the solution of the system of model equations with optimal coefficients is closest to the values of the indicator characterizing social tension. We used the normalized level of homicide rate as an indicator of social tension.

    The model contains seven coefficients. Two coefficients characterizing the influence of economic situation changes on elite and people are taken equal to each other and the same for all countries. We obtained their estimations using a simplified model that takes into account only the change in the economic situation and allows an analytical solution.

    The Bayesian approach was used to estimate the remaining five coefficients of model for post-Soviet countries. The prior probability densities of the four coefficients for all countries under consideration were taken to be the same. The prior probability density of fifth coefficient was considered to depend on the regime of government (authoritarian or «transitional»). We assumed that the calculated tension matches with the corresponding indicator of tension in cases where the difference between them does not exceed 5%.

    The calculations showed that for the post-Soviet countries, a good coincidence was obtained between the calculated values of the people tension and the normalized level of homicide rate. The coincidence is satisfactory only on average.

    The following main results was obtained at the work: under the influence of some «significant» events in 40% of post-Soviet countries, there was a rapid change in the nature of interaction between the elite and the people; regional feature have some influence on the elite–people interaction; the type of government does not significantly affect the elite–people interaction; the method for assessing the stability of the country by the value of the model coefficients is proposed.

  9. Kazarnikov A.V.
    Analysing the impact of migration on background social strain using a continuous social stratification model
    Computer Research and Modeling, 2022, v. 14, no. 3, pp. 661-673

    The background social strain of a society can be quantitatively estimated using various statistical indicators. Mathematical models, allowing to forecast the dynamics of social strain, are successful in describing various social processes. If the number of interacting groups is small, the dynamics of the corresponding indicators can be modelled with a system of ordinary differential equations. The increase in the number of interacting components leads to the growth of complexity, which makes the analysis of such models a challenging task. A continuous social stratification model can be considered as a result of the transition from a discrete number of interacting social groups to their continuous distribution in some finite interval. In such a model, social strain naturally spreads locally between neighbouring groups, while in reality, the social elite influences the whole society via news media, and the Internet allows non-local interaction between social groups. These factors, however, can be taken into account to some extent using the term of the model, describing negative external influence on the society. In this paper, we develop a continuous social stratification model, describing the dynamics of two societies connected through migration. We assume that people migrate from the social group of donor society with the highest strain level to poorer social layers of the acceptor society, transferring the social strain at the same time. We assume that all model parameters are constants, which is a realistic assumption for small societies only. By using the finite volume method, we construct the spatial discretization for the problem, capable of reproducing finite propagation speed of social strain. We verify the discretization by comparing the results of numerical simulations with the exact solutions of the auxiliary non-linear diffusion equation. We perform the numerical analysis of the proposed model for different values of model parameters, study the impact of migration intensity on the stability of acceptor society, and find the destabilization conditions. The results, obtained in this work, can be used in further analysis of the model in the more realistic case of inhomogeneous coefficients.

  10. Betelin V.B., Galkin V.A.
    Mathematical and computational problems associated with the formation of structures in complex systems
    Computer Research and Modeling, 2022, v. 14, no. 4, pp. 805-815

    In this paper, the system of equations of magnetic hydrodynamics (MHD) is considered. The exact solutions found describe fluid flows in a porous medium and are related to the development of a core simulator and are aimed at creating a domestic technology «digital deposit» and the tasks of controlling the parameters of incompressible fluid. The central problem associated with the use of computer technology is large-dimensional grid approximations and high-performance supercomputers with a large number of parallel microprocessors. Kinetic methods for solving differential equations and methods for «gluing» exact solutions on coarse grids are being developed as possible alternatives to large-dimensional grid approximations. A comparative analysis of the efficiency of computing systems allows us to conclude that it is necessary to develop the organization of calculations based on integer arithmetic in combination with universal approximate methods. A class of exact solutions of the Navier – Stokes system is proposed, describing three-dimensional flows for an incompressible fluid, as well as exact solutions of nonstationary three-dimensional magnetic hydrodynamics. These solutions are important for practical problems of controlled dynamics of mineralized fluids, as well as for creating test libraries for verification of approximate methods. A number of phenomena associated with the formation of macroscopic structures due to the high intensity of interaction of elements of spatially homogeneous systems, as well as their occurrence due to linear spatial transfer in spatially inhomogeneous systems, are highlighted. It is fundamental that the emergence of structures is a consequence of the discontinuity of operators in the norms of conservation laws. The most developed and universal is the theory of computational methods for linear problems. Therefore, from this point of view, the procedures of «immersion» of nonlinear problems into general linear classes by changing the initial dimension of the description and expanding the functional spaces are important. Identification of functional solutions with functions makes it possible to calculate integral averages of an unknown, but at the same time its nonlinear superpositions, generally speaking, are not weak limits of nonlinear superpositions of approximations of the method, i.e. there are functional solutions that are not generalized in the sense of S. L. Sobolev.

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