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The study of the physiological and pathophysiological processes in the cardiovascular system is one of the important contemporary issues, which is addressed in many works. In this work, several approaches to the mathematical modelling of the blood flow are considered. They are based on the spatial order reduction and/or use a steady-state approach. Attention is paid to the discussion of the assumptions and suggestions, which are limiting the scope of such models. Some typical mathematical formulations are considered together with the brief review of their numerical implementation. In the first part, we discuss the models, which are based on the full spatial order reduction and/or use a steady-state approach. One of the most popular approaches exploits the analogy between the flow of the viscous fluid in the elastic tubes and the current in the electrical circuit. Such models can be used as an individual tool. They also used for the formulation of the boundary conditions in the models using one dimensional (1D) and three dimensional (3D) spatial coordinates. The use of the dynamical compartment models allows describing haemodynamics over an extended period (by order of tens of cardiac cycles and more). Then, the steady-state models are considered. They may use either total spatial reduction or two dimensional (2D) spatial coordinates. This approach is used for simulation the blood flow in the region of microcirculation. In the second part, we discuss the models, which are based on the spatial order reduction to the 1D coordinate. The models of this type require relatively small computational power relative to the 3D models. Within the scope of this approach, it is also possible to include all large vessels of the organism. The 1D models allow simulation of the haemodynamic parameters in every vessel, which is included in the model network. The structure and the parameters of such a network can be set according to the literature data. It also exists methods of medical data segmentation. The 1D models may be derived from the 3D Navier – Stokes equations either by asymptotic analysis or by integrating them over a volume. The major assumptions are symmetric flow and constant shape of the velocity profile over a cross-section. These assumptions are somewhat restrictive and arguable. Some of the current works paying attention to the 1D model’s validation, to the comparing different 1D models and the comparing 1D models with clinical data. The obtained results reveal acceptable accuracy. It allows concluding, that the 1D approach can be used in medical applications. 1D models allow describing several dynamical processes, such as pulse wave propagation, Korotkov’s tones. Some physiological conditions may be included in the 1D models: gravity force, muscles contraction force, regulation and autoregulation.

In the last decades, universal scenarios of the transition to chaos in dynamic systems have been well studied. The scenario of the transition to chaos is defined as a sequence of bifurcations that occur in the system under the variation one of the governing parameters and lead to a qualitative change in dynamics, starting from the regular mode and ending with chaotic behavior. Typical scenarios include a cascade of period doubling bifurcations (Feigenbaum scenario), the breakup of a low-dimensional torus (Ruelle–Takens scenario), and the transition to chaos through the intermittency (Pomeau–Manneville scenario). In more complicated spatially distributed dynamic systems, the complexity of dynamic behavior growing with a parameter change is closely intertwined with the formation of spatial structures. However, the question of whether the spatial and temporal axes could completely exchange roles in some scenario still remains open. In this paper, for the first time, we propose a mathematical model of convection–diffusion–reaction, in which a spatial transition to chaos through the breakup of the quasi–periodic regime is realized in the framework of the Ruelle–Takens scenario. The physical system under consideration consists of two aqueous solutions of acid (A) and base (B), initially separated in space and placed in a vertically oriented Hele–Shaw cell subject to the gravity field. When the solutions are brought into contact, the frontal neutralization reaction of the second order A + B $\to$ C begins, which is accompanied by the production of salt (C). The process is characterized by a strong dependence of the diffusion coefficients of the reagents on their concentration, which leads to the appearance of two local zones of reduced density, in which chemoconvective fluid motions develop independently. Although the layers, in which convection develops, all the time remain separated by the interlayer of motionless fluid, they can influence each other via a diffusion of reagents through this interlayer. The emerging chemoconvective structure is the modulated standing wave that gradually breaks down over time, repeating the sequence of the bifurcation chain of the Ruelle–Takens scenario. We show that during the evolution of the system one of the spatial axes, directed along the reaction front, plays the role of time, and time itself starts to play the role of a control parameter.

This article presents the results of an analytical and computer study of the collective dynamic properties of a chain of self-oscillating systems (conditionally — oscillators). It is assumed that the couplings of individual elements of the chain are non-reciprocal, unidirectional. More precisely, it is assumed that each element of the chain is under the influence of the previous one, while the reverse reaction is absent (physically insignificant). This is the main feature of the chain. This system can be interpreted as an active discrete medium with unidirectional transfer, in particular, the transfer of a matter. Such chains can represent mathematical models of real systems having a lattice structure that occur in various fields of natural science and technology: physics, chemistry, biology, radio engineering, economics, etc. They can also represent models of technological and computational processes. Nonlinear self-oscillating systems (conditionally, oscillators) with a wide “spectrum” of potentially possible individual self-oscillations, from periodic to chaotic, were chosen as the “elements” of the lattice. This allows one to explore various dynamic modes of the chain from regular to chaotic, changing the parameters of the elements and not changing the nature of the elements themselves. The joint application of qualitative methods of the theory of dynamical systems and qualitative-numerical methods allows one to obtain a clear picture of all possible dynamic regimes of the chain. The conditions for the existence and stability of spatially-homogeneous dynamic regimes (deterministic and chaotic) of the chain are studied. The analytical results are illustrated by a numerical experiment. The dynamical regimes of the chain are studied under perturbations of parameters at its boundary. The possibility of controlling the dynamic regimes of the chain by turning on the necessary perturbation at the boundary is shown. Various cases of the dynamics of chains comprised of inhomogeneous (different in their parameters) elements are considered. The global chaotic synchronization (of all oscillators in the chain) is studied analytically and numerically.

In recent years, the use of neural network models for solving aerodynamics problems has become widespread. These models, trained on a set of previously obtained solutions, predict solutions to new problems. They are, in essence, interpolation algorithms. An alternative approach is to construct a neural network operator. This is a neural network that reproduces a numerical method used to solve a problem. It allows to find the solution in iterations. The paper considers the construction of such an operator using the UNet neural network with a spatial attention mechanism. It solves flow problems on a rectangular uniform grid that is common to a streamlined body and flow field. A correction mechanism is proposed to clarify the obtained solution. The problem of the stability of such an algorithm for solving a stationary problem is analyzed, and a comparison is made with other variants of its construction, including pushforward trick and positional encoding. The issue of selecting a set of iterations for forming a train dataset is considered, and the behavior of the solution is assessed using repeated use of a neural network operator.

A demonstration of the method is provided for the case of flow around a rounded plate with a turbulent flow, with various options for rounding, for fixed parameters of the incoming flow, with Reynolds number $\text{Re} = 10^5$ and Mach number $M = 0.15$. Since flows with these parameters of the incoming flow can be considered incompressible, only velocity components are directly studied. At the same time, the neural network model used to construct the operator has a common decoder for both velocity components. Comparison of flow fields and velocity profiles along the normal and outline of the body, obtained using a neural network operator and numerical methods, is carried out. Analysis is performed both on the plate and rounding. Simulation results confirm that the neural network operator allows finding a solution with high accuracy and stability.

Fluorescent imaging data are currently widely used in neuroscience and other fields. Genetically encoded sensors, based on fluorescent proteins, provide a wide inventory enabling scientiests to image virtually any process in a living cell and extracellular environment. However, especially due to the need for fast scanning, miniaturization, etc, the imaging data can be severly corrupred with multiplicative heteroscedactic noise, reflecting stochastic nature of photon emission and photomultiplier detectors. Deep learning architectures demonstrate outstanding performance in image segmentation and denoising, however they can require large clean datasets for training, and the actual data transformation is not evident from the network architecture and weight composition. On the other hand, some classical data transforms can provide for similar performance in combination with more clear insight in why and how it works. Here we propose an algorithm for denoising fluorescent dynamical imaging data, which is based on multilinear higher-order singular value decomposition (HOSVD) with optional truncation in rank along each axis and thresholding of the tensor of decomposition coefficients. In parallel, we propose a convenient paradigm for validation of the algorithm performance, based on simulated flurescent data, resulting from biophysical modeling of calcium dynamics in spatially resolved realistic 3D astrocyte templates. This paradigm is convenient in that it allows to vary noise level and its resemblance of the Gaussian noise and that it provides ground truth fluorescent signal that can be used to validate denoising algorithms. The proposed denoising method employs truncated HOSVD twice: first, narrow 3D patches, spanning the whole recording, are processed (local 3D-HOSVD stage), second, 4D groups of 3D patches are collaboratively processed (non-local, 4D-HOSVD stage). The effect of the first pass is twofold: first, a significant part of noise is removed at this stage, second, noise distribution is transformed to be more Gaussian-like due to linear combination of multiple samples in the singular vectors. The effect of the second stage is to further improve SNR. We perform parameter tuning of the second stage to find optimal parameter combination for denoising.

A formal model mechanism of oscillon formation is proposed. These structures were found in a variety of physical systems and a chemical Belousov–Jabotinsky reaction proceeding in an aerosol OT water-inoil microemulsion. Via the proposed mechanism oscillons occur as a result of interaction of two subsystems. In the first subsystem for a proper set of parameters solitary stationary structures may arise as a result of hard local excitation. These structures influence spatial distribution of the second subsystem parameter that leads to local oscillations in the subsystem.

One- and two-dimensional hydrodynamic models of turbulent transfer within the atmospheric surface layer under neutral thermal stratification are considered. Both models are based on the solution of system of the timeaveraged equations of Navier – Stokes and continuity using a 1.5-order closure scheme as well as equations for turbulent kinetic energy and the rate of its dissipation. The influence of the upper and lower boundary conditions on vertical profiles of wind speed and turbulence parameters within the atmospheric surface layer was derived using an one-dimensional model usually applied in case of an uniform ground surface. The boundary conditions in the model were prescribed in such way that the vertical wind and turbulence patterns were well agreed with widely used logarithmic vertical profile of wind speed, linear dependence of turbulent exchange coefficient on height above ground surface level and constancy of turbulent kinetic energy within the atmospheric surface layer under neutral atmospheric conditions. On the basis of the classical one-dimensional model it is possible to obtain a number of relationships which link the vertical wind speed gradient, turbulent kinetic energy and the rate of its dissipation. Each of these relationships can be used as a boundary condition in our hydrodynamic model. The boundary conditions for the wind speed and the rate of dissipation of turbulent kinetic energy were selected as parameters to provide the smallest deviations of model calculations from classical distributions of wind and turbulence parameters. The corresponding upper and lower boundary conditions were used to define the initial and boundary value problem in the two-dimensional hydrodynamic model allowing to consider complex topography and horizontal vegetation heterogeneity. The two-dimensional model with selected optimal boundary conditions was used to describe the spatial pattern of turbulent air flow when it interacted with the forest edge. The dynamics of the air flow establishment depending on the distance from the forest edge was analyzed. For all considered initial and boundary value problems the unconditionally stable implicit finite-difference schemes of their numerical solution were developed and implemented.

The article presents the results of numerical modeling of the vortex spatial non-stationary motion of the medium arising near the lateral and bottom surfaces of the descent module during its movement in the atmosphere of Mars. The numerical study was performed for the high-speed streamline regime at various angles of attack. Mathematical modeling was carried out on the basis of the Navier – Stokes model and the model of equilibrium chemical reactions for the Martian atmosphere gas. The simulation results showed that under the considered conditions of the descent module motion, a non-stationary flow with a pronounced vortex character is realized near its lateral and bottom surfaces. Numerical calculations indicate that, depending on the angle of attack, the nonstationarity and vortex nature of the flow can manifest itself both on the entire lateral and bottom surfaces of the module, and, partially, on their leeward side. For various angles of attack, pictures of the vortex structure of the flow near the surface of the descent vehicle and in its near wake are presented, as well as pictures of the gas-dynamic parameters fields. The non-stationary nature of the flow is confirmed by the presented time dependences of the gas-dynamic parameters of the flow at various points on the module surface. The carried out parametric calculations made it possible to determine the dependence of the aerodynamic characteristics of the descent module on the angle of attack. Mathematical modeling is carried out on the basis of the conservative numerical method of fluxes, which is a finitevolume method based on a finite-difference writing of the conservation laws of additive characteristics of the medium using «upwind» approximations of stream variables. To simulate the complex vortex structure of the flow over descent module, the nonuniform computational grids are used, including up to 30 million finite volumes with exponential thickening to the surface, which made it possible to reveal small-scale vortex formations. Numerical investigations were carried out on the basis of the developed software package based on parallel algorithms of the used numerical method and implemented on modern multiprocessor computer systems. The results of numerical simulation presented in the article were obtained using up to two thousand computing cores of a multiprocessor complex.

The work is devoted to numerical modeling of two-phase flows, namely, the calculation of supersonic flow around a blunt body by a viscous gas flow with an admixture of large high inertia particles. The system of unsteady Navier – Stokes equations is numerically solved by the meshless method. It uses the cloud of points in space to represent the fields of gas parameters. The spatial derivatives of gas parameters and functions are approximated by the least square method to calculate convective and viscous fluxes in the Navier – Stokes system of equations. The convective fluxes are calculated by the HLLC method. The third-order MUSCL reconstruction scheme is used to achieve high order accuracy. The viscous fluxes are calculated by the second order approximation scheme. The streamlined body surface is represented by a model of an isothermal wall. It implements the conditions for the zero velocity and zero pressure gradient, which is also modeled using the least squares method.

Every moving body is surrounded by its own cloud of points belongs to body’s domain and moving along with it in space. The explicit three-sage Runge–Kutta method is used to solve numerically the system of gas dynamics equations in the main coordinate system and local coordinate systems of each particle.

Two methods for the moving objects modeling with reverse impact on the gas flow have been implemented. The first one uses stationary point clouds with fixed neighbors within the same domain. When regions overlap, some nodes of one domain, for example, the boundary nodes of the particle domain, are excluded from the calculation and filled with the values of gas parameters from the nearest nodes of another domain using the least squares approximation of gradients. The internal nodes of the particle domain are used to reconstruct the gas parameters in the overlapped nodes of the main domain. The second method also uses the exclusion of nodes in overlapping areas, but in this case the nodes of another domain take the place of the excluded neighbors to build a single connected cloud of nodes. At the same time, some of the nodes are moving, and some are stationary. Nodes membership to different domains and their relative speed are taken into account when calculating fluxes.

The results of modeling the motion of a particle in a stationary gas and the flow around a stationary particle by an incoming flow at the same relative velocity show good agreement for both presented methods.

A compact finite difference scheme has been developed for modeling convection in a porous medium saturated with a fluid. We consider the problem for a rectangular domain with anisotropic permeability and thermal conductivity properties in terms of stream function and temperature deviation, taking into account Darcy's law. Boundary conditions of impenetrability and a linear distribution of temperature are set. This model is cosymmetric when certain conditions are imposed on the permeability and thermal conductivities. One parametric family of stationary convection regimes arises when mechanical equilibrium loses stability. A numerical method with a fourth-order finite difference approximation for spatial variables and a Runge – Kutta integrator for time has been developed. It has been proved that this scheme preserves cosymmetry. Numerical results for evaluating the critical Rayleigh number have been presented. We compare them with results obtained using a second-order finite-difference method. We show that critical Rayleigh numbers are repeated twice with very high accuracy, which proves cosymmetry preservation. Numerical evaluation of convective regimes and spectral properties are presented. The efficiency of the developed compact finite difference scheme on a nine-point stencil is assessed.