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This study proposes and analyzes a discrete-time mathematical model of population dynamics with seasonal reproduction, taking into account the density-dependent regulation and sex structure. In the model, population birth rate depends on the number of females, while density is regulated through juvenile survival, which decreases exponentially with increasing total population size. Analytical and numerical investigations of the model demonstrate that when more than half of both females and males survive, the population exhibits stable dynamics even at relatively high birth rates. Oscillations arise when the limitation of female survival exceeds that of male survival. Increasing the intensity of male survival limitation can stabilize population dynamics, an effect particularly evident when the proportion of female offspring is low. Depending on parameter values, the model exhibits stable, periodic, or irregular dynamics, including multistability, where changes in current population size driven by external factors can shift the system between coexisting dynamic modes. To apply the model to real populations, we propose an approach for estimating demographic parameters based on total abundance data. The key idea is to reduce the two-component discrete model with sex structure to a delay equation dependent only on total population size. In this formulation, the initial sex structure is expressed through total abundance and depends on demographic parameters. The resulting one-dimensional equation was applied to describe and estimate demographic characteristics of ungulate populations in the Jewish Autonomous Region. The delay equation provides a good fit to the observed dynamics of ungulate populations, capturing long-term trends in abundance. Point estimates of parameters fall within biologically meaningful ranges and produce population dynamics consistent with field observations. For moose, roe deer, and musk deer, the model suggests predominantly stable dynamics, while annual fluctuations are primarily driven by external factors and represent deviations from equilibrium. Overall, these estimates enable the analysis of structured population dynamics alongside short-term forecasting based on total abundance data.

The paper deals with a prey-predator model, which describes the spatiotemporal dynamics of plankton community and the nutrients. The system is described by reaction-diffusion-advection equations in a onedimensional vertical column of water in the surface layer. Advective term of the predator equation represents the vertical movements of zooplankton with velocity, which is assumed to be proportional to the gradient of phytoplankton density. This study aimed to determine the conditions under which these movements (taxis) lead to the spatially heterogeneous structures generated by the system. Assuming diffusion coefficients of all model components to be equal the instability of the system in the vicinity of stationary homogeneous state with respect to small inhomogeneous perturbations is analyzed.

Necessary conditions for the flow-induced instability were obtained through linear stability analysis. Depending on the local kinetics parameters, increasing the taxis rate leads to Turing or wave instability. This fact is in good agreement with conditions for the emergence of spatial and spatiotemporal patterns in a minimal phytoplankton–zooplankton model after flow-induced instabilities derived by other authors. This mechanism of generating patchiness is more general than the Turing mechanism, which depends on strong conditions on the diffusion coefficients.

While the taxis exceeding a certain critical value, the wave number corresponding to the fastest growing mode remains unchanged. This value determines the type of spatial structure. In support of obtained results, the paper presents the spatiotemporal dynamics of the model components demonstrating Turing-type pattern and standing wave pattern.

The article is devoted to the application of various methods of mathematical analysis, search for patterns and studying the composition of nucleotides in DNA sequences at the genomic level. New methods of mathematical biology that made it possible to detect and visualize the hidden ordering of genetic nucleotide sequences located in the chromosomes of cells of living organisms described. The research was based on the work on algebraic biology of the doctor of physical and mathematical sciences S. V. Petukhov, who first introduced and justified new algebras and hypercomplex numerical systems describing genetic phenomena. This paper describes a new phase in the development of matrix methods in genetics for studying the properties of nucleotide sequences (and their physicochemical parameters), built on the principles of finite geometry. The aim of the study is to demonstrate the capabilities of new algorithms and discuss the discovered properties of genetic DNA and RNA molecules. The study includes three stages: parameterization, scaling, and visualization. Parametrization is the determination of the parameters taken into account, which are based on the structural and physicochemical properties of nucleotides as elementary components of the genome. Scaling plays the role of “focusing” and allows you to explore genetic structures at various scales. Visualization includes the selection of the axes of the coordinate system and the method of visual display. The algorithms presented in this work are put forward as a new toolkit for the development of research software for the analysis of long nucleotide sequences with the ability to display genomes in parametric spaces of various dimensions. One of the significant results of the study is that new criteria were obtained for the classification of the genomes of various living organisms to identify interspecific relationships. The new concept allows visually and numerically assessing the variability of the physicochemical parameters of nucleotide sequences. This concept also allows one to substantiate the relationship between the parameters of DNA and RNA molecules with fractal geometric mosaics, reveals the ordering and symmetry of polynucleotides, as well as their noise immunity. The results obtained justified the introduction of new terms: “genometry” as a methodology of computational strategies and “genometrica” as specific parameters of a particular genome or nucleotide sequence. In connection with the results obtained, biosemiotics and hierarchical levels of organization of living matter are raised.

The research is devoted to the problem of the use of social networks as a tool of the illegal activity and as a source of information that could be dangerous to society. The article presents the structure of the multiagent system with which a social network groups could be clustered according to the criteria uniquely defines a group as a destructive. The agents’ of the system clustering algorithm is described.

Superplastic forming of Ni and Ti based alloys is widely used in aerospace industry. The main advantage of using the effect of superplasticity in sheet metal forming processes is a feasibility of forming materials with a high amount of plastic strain in conditions of prevailing tensile stresses. This article is dedicated to study commercial FEM software SFTC DEFORM application for prediction thickness deviation during low temperature superplastic forming of UFG Ti-6-4 alloy. Experimentally, thickness deviation during superplastic forming can be observed in the local area of plastic deformation and this process is aggravated by local softening of the metal and this is stipulated by microstructure coarsening. The theoretical model was prepared to analyze experimentally observed metal flow. Two approaches have been used for that. The first one is the using of integrated creep rheology model in DEFORM. As superplastic effect is observed only in materials with fine and ultrafine grain sizes the second approach is carried out using own user procedures for rheology model which is based on microstructure evolution equations. These equations have been implemented into DEFORM via Fortran user’s solver subroutines. Using of FEM simulation for this type of forming allows tracking a strain rate in different parts of a workpiece during a process, which is crucial for maintaining the superplastic conditions. Comparison of these approaches allows us to make conclusions about effect of microstructure evolution on metal flow during superplastic deformation. The results of the FEM analysis and theoretical conclusions have been approved by results of the conducted Erichsen test. The main issues of this study are as follows: a) the DEFORM software allows an engineer to predict formation of metal shape under the condition of low-temperature superplasticity; b) in order to augment the accuracy of the prediction of local deformations, the effect of the microstructure state of an alloy having sub-microcristalline structure should be taken into account in the course of calculations in the DEFORM software.

This work is devoted to the analysis of conformational changes in tubulin dimers and tetramers, in particular, the assessment of the bending of microtubule protofilaments. Three recently exploited approaches for estimating the bend of tubulin protofilaments are reviewed: (1) measurement of the angle between the vector passing through the H7 helices in $\alpha$ and $\beta$ tubulin monomers in the straight structure and the same vector in the curved structure of tubulin; (2) measurement of the angle between the vector, connecting the centers of mass of the subunit and the associated GTP nucleotide, and the vector, connecting the centers of mass of the same nucleotide and the adjacent tubulin subunit; (3) measurement of the three rotation angles of the bent tubulin subunit relative to the straight subunit. Quantitative estimates of the angles calculated at the intra- and inter-dimer interfaces of tubulin in published crystal structures, calculated in accordance with the three metrics, are presented. Intra-dimer angles of tubulin in one structure, measured by the method (3), as well as measurements by this method of the intra-dimer angles in different structures, were more similar, which indicates a lower sensitivity of the method to local changes in tubulin conformation and characterizes the method as more robust. Measuring the angle of curvature between H7-helices (method 1) produces somewhat underestimated values of the curvature per dimer. Method (2), while at first glance generating the bending angle values, consistent the with estimates of curved protofilaments from cryoelectron microscopy, significantly overestimates the angles in the straight structures. For the structures of tubulin tetramers in complex with the stathmin protein, the bending angles calculated with all three metrics varied quite significantly for the first and second dimers (up to 20% or more), which indicates the sensitivity of all metrics to slight variations in the conformation of tubulin dimers within these complexes. A detailed description of the procedures for measuring the bending of tubulin protofilaments, as well as identifying the advantages and disadvantages of various metrics, will increase the reproducibility and clarity of the analysis of tubulin structures in the future, as well as it will hopefully make it easier to compare the results obtained by various scientific groups.

In general, solving the information explosion problem can be delegated to systems for automatic processing of digital data. These systems are intended for recognizing, sorting, meaningfully processing and presenting data in formats readable and interpretable by humans. The creation of intelligent knowledge extraction systems that handle unstructured data would be a natural solution in this area. At the same time, the evident progress in these tasks for structured data contrasts with the limited success of unstructured data processing, and, in particular, document processing. Currently, this research area is undergoing active development and investigation. The present paper is a systematic survey on both Russian and international publications that are dedicated to the leading trend in automatic text data processing: Text Mining (TM). We cover the main tasks and notions of TM, as well as its place in the current AI landscape. Furthermore, we analyze the complications that arise during the processing of texts written in natural language (NLP) which are weakly structured and often provide ambiguous linguistic information. We describe the stages of text data preparation, cleaning, and selecting features which, alongside the data obtained via morphological, syntactic, and semantic analysis, constitute the input for the TM process. This process can be represented as mapping a set of text documents to «knowledge». Using the case of stock trading, we demonstrate the formalization of the problem of making a trade decision based on a set of analytical recommendations. Examples of such mappings are methods of Information Retrieval (IR), text summarization, sentiment analysis, document classification and clustering, etc. The common point of all tasks and techniques of TM is the selection of word forms and their derivatives used to recognize content in NL symbol sequences. Considering IR as an example, we examine classic types of search, such as searching for word forms, phrases, patterns and concepts. Additionally, we consider the augmentation of patterns with syntactic and semantic information. Next, we provide a general description of all NLP instruments: morphological, syntactic, semantic and pragmatic analysis. Finally, we end the paper with a comparative analysis of modern TM tools which can be helpful for selecting a suitable TM platform based on the user’s needs and skills.

Numerical simulation of hull flow, marine propellers and other basic problems of ship hydrodynamics using Cartesian adaptive locally-refined grids is advantageous with respect to numerical setup and makes an express analysis very convenient. However, when more accurate viscous phenomena are needed, they condition some problems including a sharp increase of cell number due to high levels of main grid adaptation needed to resolve boundary layers and time step decrease in simulations with a free surface due to decrease of transit time in adapted cells. To avoid those disadvantages, additional boundary layer grids are suggested for resolution of boundary layers. The boundary layer grids are one-dimensional adaptations of main grid layers nearest to a wall, which are built along a normal direction. The boundary layer grids are additional (or chimerical), their volumes are not subtracted from main grid volumes. Governing equations of flow are integrated in both grids simultaneously, and the solutions are merged according to a special algorithm. In simulations of ship hull flow boundary layer grids are able to provide sufficient conditions for low-Reynolds turbulence models and significantly improve flow structure in continues boundary layers along smooth surfaces. When there are flow separations or other complex phenomena on a hull surface, it can be subdivided into regions, and the boundary layer grids should be applied to the regions with simple flow only. This still provides a drastic decrease of computational efforts. In simulations of marine propellers, the boundary layer grids are able to provide refuse of wall functions on blade surfaces, what leads to significantly more accurate hydrodynamic forces. Altering number and configuration of boundary grid layers, it is possible to vary a boundary layer resolution without change of a main grid. This makes the boundary layer grids a suitable tool to investigate scale effects in both problems considered.

A mathematical model of tumor growth in tissue taking into account angiogenesis and antiangiogenic therapy is developed. In the model the convective flows in tissue are considered as well as individual motility of tumor cells. It is considered that a cell starts to migrate if the nutrient concentration falls lower than the critical level and returns into proliferation in the region with high nutrient concentration. Malignant cells in the state of metabolic stress produce vascular endothelial growth factor (VEGF), stimulating tumor angiogenesis, which increases the nutrient supply. In this work an antiangiogenic drug which bounds irreversibly to VEGF, converting it to inactive form, is modeled. Numerical analysis of influence of antiangiogenic drug concentration and efficiency on tumor rate of growth and structure is performed. It is shown that antiangiogenic therapy can decrease the growth of low-invasive tumor, but is not able to stop it completely.

The article dwells upon investigating the issue of the most adequate tools developing and justifying to forecast the interregional migration flows value and structure. Migration processes have a significant impact on the size and demographic structure of the population of territories, the state and balance of regional and local labor markets.

To analyze the migration processes and to assess their impact an economic-mathematical tool is required which would be instrumental in modelling the migration processes and flows for different areas with the desired precision. The current methods and approaches to the migration processes modelling, including the analysis of their advantages and disadvantages, were considered. It is noted that to implement many of these methods mass aggregated statistical data is required which is not always available and doesn’t characterize the migrants behavior at the local level where the decision to move to a new dwelling place is made. This has a significant impact on the ability to apply appropriate migration processes modelling techniques and on the projection accuracy of the migration flows magnitude and structure.

The cellular automata model for interregional migration flows modelling, implementing the integration of the households migration behavior model under the conditions of the Bounded Rationality into the general model of the area migration flow was developed and tested based on the Primorye Territory data. To implement the households migration behavior model under the conditions of the Bounded Rationality the integral attractiveness index of the regions with economic, social and ecological components was proposed in the work.

To evaluate the prognostic capacity of the developed model, it was compared with the available cellular automata models used to predict interregional migration flows. The out of sample prediction method which showed statistically significant superiority of the proposed model was applied for this purpose. The model allows obtaining the forecasts and quantitative characteristics of the areas migration flows based on the households real migration behaviour at the local level taking into consideration their living conditions and behavioural motives.