Результаты поиска по 'variable parameters':
Найдено статей: 64
  1. Nikitiuk A.S.
    Parameter identification of viscoelastic cell models based on force curves and wavelet transform
    Computer Research and Modeling, 2023, v. 15, no. 6, pp. 1653-1672

    Mechanical properties of eukaryotic cells play an important role in life cycle conditions and in the development of pathological processes. In this paper we discuss the problem of parameters identification and verification of viscoelastic constitutive models based on force spectroscopy data of living cells. It is proposed to use one-dimensional continuous wavelet transform to calculate the relaxation function. Analytical calculations and the results of numerical simulation are given, which allow to obtain relaxation functions similar to each other on the basis of experimentally determined force curves and theoretical stress-strain relationships using wavelet differentiation algorithms. Test examples demonstrating correctness of software implementation of the proposed algorithms are analyzed. The cell models are considered, on the example of which the application of the proposed procedure of identification and verification of their parameters is demonstrated. Among them are a structural-mechanical model with parallel connected fractional elements, which is currently the most adequate in terms of compliance with atomic force microscopy data of a wide class of cells, and a new statistical-thermodynamic model, which is not inferior in descriptive capabilities to models with fractional derivatives, but has a clearer physical meaning. For the statistical-thermodynamic model, the procedure of its construction is described in detail, which includes the following. Introduction of a structural variable, the order parameter, to describe the orientation properties of the cell cytoskeleton. Setting and solving the statistical problem for the ensemble of actin filaments of a representative cell volume with respect to this variable. Establishment of the type of free energy depending on the order parameter, temperature and external load. It is also proposed to use an oriented-viscous-elastic body as a model of a representative element of the cell. Following the theory of linear thermodynamics, evolutionary equations describing the mechanical behavior of the representative volume of the cell are obtained, which satisfy the basic thermodynamic laws. The problem of optimizing the parameters of the statisticalthermodynamic model of the cell, which can be compared both with experimental data and with the results of simulations based on other mathematical models, is also posed and solved. The viscoelastic characteristics of cells are determined on the basis of comparison with literature data.

  2. Govorkov D.A., Novikov V.P., Solovyev I.G., Tsibulsky V.R.
    Interval analysis of vegetation cover dynamics
    Computer Research and Modeling, 2020, v. 12, no. 5, pp. 1191-1205

    In the development of the previously obtained result on modeling the dynamics of vegetation cover, due to variations in the temperature background, a new scheme for the interval analysis of the dynamics of floristic images of formations is presented in the case when the parameter of the response rate of the model of the dynamics of each counting plant species is set by the interval of scatter of its possible values. The detailed description of the functional parameters of macromodels of biodiversity, desired in fundamental research, taking into account the essential reasons for the observed evolutionary processes, may turn out to be a problematic task. The use of more reliable interval estimates of the variability of functional parameters “bypasses” the problem of uncertainty in the primary assessment of the evolution of the phyto-resource potential of the developed controlled territories. The solutions obtained preserve not only a qualitative picture of the dynamics of species diversity, but also give a rigorous, within the framework of the initial assumptions, a quantitative assessment of the degree of presence of each plant species. The practical significance of two-sided estimation schemes based on the construction of equations for the upper and lower boundaries of the trajectories of the scatter of solutions depends on the conditions and measure of proportional correspondence of the intervals of scatter of the initial parameters with the intervals of scatter of solutions. For dynamic systems, the desired proportionality is not always ensured. The given examples demonstrate the acceptable accuracy of interval estimation of evolutionary processes. It is important to note that the constructions of the estimating equations generate vanishing intervals of scatter of solutions for quasi-constant temperature perturbations of the system. In other words, the trajectories of stationary temperature states of the vegetation cover are not roughened by the proposed interval estimation scheme. The rigor of the result of interval estimation of the species composition of the vegetation cover of formations can become a determining factor when choosing a method in the problems of analyzing the dynamics of species diversity and the plant potential of territorial systems of resource-ecological monitoring. The possibilities of the proposed approach are illustrated by geoinformation images of the computational analysis of the dynamics of the vegetation cover of the Yamal Peninsula and by the graphs of the retro-perspective analysis of the floristic variability of the formations of the landscapelithological group “Upper” based on the data of the summer temperature background of the Salehard weather station from 2010 to 1935. The developed indicators of floristic variability and the given graphs characterize the dynamics of species diversity, both on average and individually in the form of intervals of possible states for each species of plant.

  3. Ha D.T., Tsybulin V.G.
    Multi-stable scenarios for differential equations describing the dynamics of a predators and preys system
    Computer Research and Modeling, 2020, v. 12, no. 6, pp. 1451-1466

    Dynamic scenarios leading to multistability in the form of continuous families of stable solutions are studied for a system of autonomous differential equations. The approach is based on determining the cosymmetries of the problem, calculating stationary solutions, and numerically-analytically studying their stability. The analysis is carried out for equations of the Lotka –Volterra type, describing the interaction of two predators feeding on two related prey species. For a system of ordinary differential equations of the 4th order with 11 real parameters, a numerical-analytical study of possible interaction scenarios was carried out. Relationships are found analytically between the control parameters under which the cosymmetry linear in the variables of the problem is realized and families of stationary solutions (equilibria) arise. The case of multicosymmetry is established and explicit formulas for a two-parameter family of equilibria are presented. The analysis of the stability of these solutions made it possible to reveal the division of the family into regions of stable and unstable equilibria. In a computational experiment, the limit cycles branching off from unstable stationary solutions are determined and their multipliers corresponding to multistability are calculated. Examples of the coexistence of families of stable stationary and non-stationary solutions are presented. The analysis is carried out for the growth functions of logistic and “hyperbolic” types. Depending on the parameters, scenarios can be obtained when only stationary solutions (coexistence of prey without predators and mixed combinations), as well as families of limit cycles, are realized in the phase space. The multistability scenarios considered in the work allow one to analyze the situations that arise in the presence of several related species in the range. These results are the basis for subsequent analysis when the parameters deviate from cosymmetric relationships.

  4. Plusnina T.Yu., Voronova E.N., Goltzev V.N., Pogosyan S.I., Yakovleva O.V., Riznichenko G.Yu., Rubin A.B.
    Reduced model of photosystem II and its use to evaluate the photosynthetic apparatus characteristics according to the fluorescence induction curves
    Computer Research and Modeling, 2012, v. 4, no. 4, pp. 943-958

    The approach for the analysis of some large-scale biological systems, on the base of quasiequilibrium stages is proposed. The approach allows us to reduce the detailed large-scaled models and obtain the simplified model with an analytical solution. This makes it possible to reproduce the experimental curves with a good accuracy. This approach has been applied to a detailed model of the primary processes of photosynthesis in the reaction center of photosystem II. The resulting simplified model of photosystem II describes the experimental fluorescence induction curves for higher and lower plants, obtained under different light intensities. Derived relationships between variables and parameters of detailed and simplified models, allow us to use parameters of simplified model to describe the dynamics of various states of photosystem II detailed model.

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