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Найдено статей: 73
  1. Lihachev I.V., Galzitskaya O.V., Balabaev N.K.
    Investigation of C-Cadherin mechanical properties by Molecular Dynamics
    Computer Research and Modeling, 2013, v. 5, no. 4, pp. 727-735

    The mechanical stability of cell adhesion protein Cadherin with explicit model of water is studied by the method of molecular dynamics. The protein in apo-form and with the ions of different types (Ca2+, Mg2+, Na+, K+) was unfolding with a constant speed by applying the force to the ends. Eight independent experiments were done for each form of the protein. It was shown that univalent ions stabilize the structure less than bivalent one under mechanical unfolding of the protein. A model system composed of two amino acids and the metal ion between them demonstrates properties similar to that of the cadherin in the stretching experiments. The systems with potassium and sodium ions have less mechanical stability then the systems with calcium and magnesium ions.

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  2. Ilyasov D.V., Molchanov A.G., Glagolev M.V., Suvorov G.G., Sirin A.A.
    Modelling of carbon dioxide net ecosystem exchange of hayfield on drained peat soil: land use scenario analysis
    Computer Research and Modeling, 2020, v. 12, no. 6, pp. 1427-1449

    The data of episodic field measurements of carbon dioxide balance components (soil respiration — Rsoil, ecosystem respiration — Reco, net ecosystem exchange — NEE) of hayfields under use and abandoned one are interpreted by modelling. The field measurements were carried within five field campaigns in 2018 and 2019 on the drained part of the Dubna Peatland in Taldom District, Moscow Oblast, Russia. The territory is within humid continental climate zone. Peatland drainage was done out for milled peat extraction. After extraction was stopped, the residual peat deposit (1–1.5 m) was ploughed and grassed (Poa pratensis L.) for hay production. The current ground water level (GWL) varies from 0.3–0.5 m below the surface during wet and up to 1.0 m during dry periods. Daily dynamics of CO2 fluxes was measured using dynamic chamber method in 2018 (August) and 2019 (May, June, August) for abandoned ditch spacing only with sanitary mowing once in 5 years and the ditch spacing with annual mowing. NEE and Reco were measured on the sites with original vegetation, and Rsoil — after vegetation removal. To model a seasonal dynamics of NEE, the dependence of its components (Reco, Rsoil, and Gross ecosystematmosphere exchange of carbon dioxide — GEE) from soil and air temperature, GWL, photosynthetically active radiation, underground and aboveground plant biomass were used. The parametrization of the models has been carried out considering the stability of coefficients estimated by the bootstrap method. R2 (α = 0.05) between simulated and measured Reco was 0.44 (p < 0.0003) on abandoned and 0.59 (p < 0.04) on under use hayfield, and GEE was 0.57 (p < 0.0002) and 0.77 (p < 0.00001), respectively. Numerical experiments were carried out to assess the influence of different haymaking regime on NEE. It was found that NEE for the season (May 15 – September 30) did not differ much between the hayfield without mowing (4.5±1.0 tC·ha–1·season–1) and the abandoned one (6.2±1.4). Single mowing during the season leads to increase of NEE up to 6.5±0.9, and double mowing — up to 7.5±1.4 tC·ha–1·season–1. This means increase of carbon losses and CO2 emission into the atmosphere. Carbon loss on hayfield for both single and double mowing scenario was comparable with abandoned hayfield. The value of removed phytomass for single and double mowing was 0.8±0.1 tC·ha–1·season–1 and 1.4±0.1 (45% carbon content in dry phytomass) or 3.0 and 4.4 t·ha–1·season–1 of hay (17% moisture content). In comparison with the fallow, the removal of biomass of 0.8±0.1 at single and 1.4±0.1 tC·ha–1·season–1 double mowing is accompanied by an increase in carbon loss due to CO2 emissions, i.e., the growth of NEE by 0.3±0.1 and 1.3±0.6 tC·ha–1·season–1, respectively. This corresponds to the growth of NEE for each ton of withdrawn phytomass per hectare of 0.4±0.2 tС·ha–1·season–1 at single mowing, and 0.9±0.7 tС·ha–1·season–1 at double mowing. Therefore, single mowing is more justified in terms of carbon loss than double mowing. Extensive mowing does not increase CO2 emissions into the atmosphere and allows, in addition, to “replace” part of the carbon loss by agricultural production.

  3. Bogdanov A.V., Degtyreva Ya.A., Zakharchuk E.A., Tikhonova N.A., Foux V.R., Khramushin V.N.
    Interactive graphical toolkit global computer simulations in marine service operational forecasts
    Computer Research and Modeling, 2015, v. 7, no. 3, pp. 641-648

    Efficiency and completeness of the numerical simulation in oceanography and hydrometeorology are entirely determined by algorithmic features of the construction of an interactive computer simulations in the scale of the oceans with adaptive coated closed seas and coastal waters refined mathematical models, with the possibility of specifying software parallelization calculations near the concrete — the protected areas of the sea coast. An important component of the research is continuous graphical visualization techniques in the course of calculations, including those undertaken in parallel processes with shared RAM or test points on the external media. The results of computational experiments are used in the description of hydrodynamic processes near the coast, which is important in keeping the organization of sea control services and forecasting marine hazards.

    Citations: 1 (RSCI).
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