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We have investigated dynamics of synthetic genetic oscillators — repressilators — coupled through autoinducer diffusion. The model of the system with phase-repulsive coupling structure is under consideration. We have examined emergence of periodic regimes, stable inhomogeneous steady states depending on the main systems’ parameters: coupling strength and maximal transcription rate. It has been shown that autoinducer production module added to the isolated repressilator cause the limit cycle to disappear through infinite period bifurcation for sufficiently large transcription rate. We have found hysteresis of limit cycle and stable steady state the size of which is determined by ratio between mRNA and protein lifetimes. Two coupled oscillators system demonstrates stable anti-phase oscillations which can become a chaotic regime through invariant torus emergence or via Feigenbaum scenario.

The dynamics of coupled elements’ ensembles are investigated in the context of description of spatio-temporal processes in the myocardium. Basic element is map-based model constructed by simplification and reduction of Luo-Rudy model. In particular, capabilities of the model in replication of different regimes of cardiac activity are shown, including excitable and oscillatory regimes. The dynamics of 1D and 2D lattices of coupled oscillatory elements with a random distribution of individual frequencies are considered. Effects of cluster synchronization and transition to global synchronization by increasing of coupling strength are discussed. Impulse propagation in the chain of excitable cells has been observed. Analysis of 2D lattice of excitable elements with target and spiral waves have been made. The characteristics of the spiral wave has been analyzed in depending on the individual parameters of the map and coupling strength between elements of the lattice. A study of mixed ensembles consisting of excitable and oscillatory elements with a gradient changing of the properties have been made, including the task for description of normal and pathological activity of the sinoatrial node.

Investigation of influence of non-equilibrium initial states and structural disorder on characteristics of anomalous slow non-equilibrium critical behavior of three-dimensional Ising model is carried out. The unique ageing properties and violations of the equilibrium fluctuation-dissipation theorem are observed for considered pure and disordered systems which were prepared in high-temperature initial state and then quenched in their critical points. The heat-bath algorithm description of ageing properties in non-equilibrium critical behavior of three-dimensional Ising model with spin concentrations p = 1.0, p = 0.8, and 0.6 is realized. On the base of analysis of such two-time quantities as autocorrelation function and dynamical susceptibility were demonstrated the ageing effects and were calculated asymptotic values of universal fluctuation-dissipation ratio in these systems. It was shown that the presence of defects leads to aging gain.

The article deals with the nonlinear model of population dynamics of different ages workers in the regional economy. The model is built on the principles underlying modeling in econophysics. The authors demonstrate the complex dynamics of the model regimes that impose fundamental limits on medium- and long-term forecast of employment in a region. By analogy with the biophysical approach the authors propose a classification of social interactions of the different age-group workers. The model analysis is given for the level of employment among age groups. The verification of the model performs on the statistical data of the Jewish Autonomous Region.

Investigation of logical deterministic cellular automata models of population dynamics allows to reveal detailed individual-based mechanisms. The search for such mechanisms is important in connection with ecological problems caused by overexploitation of natural resources, environmental pollution and climate change. Classical models of population dynamics have the phenomenological nature, as they are “black boxes”. Phenomenological models fundamentally complicate research of detailed mechanisms of ecosystem functioning. We have investigated the role of fecundity and duration of resources regeneration in mechanisms of population growth using four models of ecosystem with one species. These models are logical deterministic cellular automata and are based on physical axiomatics of excitable medium with regeneration. We have modeled catastrophic death of population arising from increasing of resources regeneration duration. It has been shown that greater fecundity accelerates population extinction. The investigated mechanisms are important for understanding mechanisms of sustainability of ecosystems and biodiversity conservation. Prospects of the presented modeling approach as a method of transparent multilevel modeling of complex systems are discussed.

The three-dimensional model of biomass dynamics of a tree growing on a limited territory presented. The tree consists of structural sections periodically arising on its top. Each section generates a virtual "tree". Adjacent virtual trees are nested each other and their difference is the section. Sections have biomass dynamics which differs from the dynamics of the tree and gradually die off (including in course of the free growth of the tree), giving effect denudation of trunk from bottom. This is observed in nature. The 3D-model of biomass dynamics of a tree, growing in a limited area, for describing the biomass dynamics of sections and their constituent sectors uses equations similar to those proposed earlier for the 2D-tree model. Examples of biomass dynamics of sectors, sections and tree obtained using the developed model are presented. The dynamics of the hodographs of the azimuthal biomass distribution of sections demonstrates that the lower sections of a tree growing in a limited area, are in oppression and die (more quickly compared with the model of freely growing tree), and new sections on top of the tree appear and grow freely. As a result, "wave" of tree biomass runs up the trunk.

The course and outcome of the battle is largely dependent on the morale of the troops, characterized by the percentage of loss in killed and wounded, in which the troops still continue to fight. Every fight is a psychological act of ending his rejection of one of the parties. Typically, models of battle psychological factor taken into account in the decision of Lanchester equations (the condition of equality of forces, when the number of one of the parties becomes zero). It is emphasized that the model Lanchester type satisfactorily describe the dynamics of the battle only in the initial stages. To resolve this contradiction is proposed to use a modification of Lanchester's equations, taking into account the fact that at any moment of the battle on the enemy firing not affected and did not abandon the battle fighters. The obtained differential equations are solved by numerical method and allow the dynamics to take into account the influence of psychological factor and evaluate the completion time of the conflict. Computational experiments confirm the known military theory is the fact that the fight usually ends in refusal of soldiers of one of the parties from its continuation (avoidance of combat in various forms). Along with models of temporal and spatial dynamics proposed to use a modification of the technology features of the conflict of S. Skaperdas, based on the principles of combat. To estimate the probability of victory of one side in the battle takes into account the interest of the maturing sides of the bloody casualties and increased military superiority.

An approach to numerical analysis of thermo-hydraulic processes proceeding in a fast-neutron reactor is described in the given article. The description covers physical models, numerical schemes and geometry simplifications accepted in the computational model. Steady-state and dynamic regimes of reactor operation are considered. The steady-state regimes simulate the reactor operation at nominal power. The dynamic regimes simulate the shutdown reactor cooling by means of the heat-removal system.

Simulation of thermo-hydraulic processes is carried out in the FlowVision CFD software. A mathematical model describing the coolant flow in the first loop of the fast-neutron reactor was developed on the basis of the available geometrical model. The flow of the working fluid in the reactor simulator is calculated under the assumption that the fluid density does not depend on pressure, with use a $k–\varepsilon$ turbulence model, with use of a model of dispersed medium, and with account of conjugate heat exchange. The model of dispersed medium implemented in the FlowVision software allowed taking into account heat exchange between the heat-exchanger lops. Due to geometric complexity of the core region, the zones occupied by the two heat exchangers were modeled by hydraulic resistances and heat sources.

Numerical simulation of the coolant flow in the FlowVision software enabled obtaining the distributions of temperature, velocity and pressure in the entire computational domain. Using the model of dispersed medium allowed calculation of the temperature distributions in the second loops of the heat exchangers. Besides that, the variation of the coolant temperature along the two thermal probes is determined. The probes were located in the cool and hot chambers of the fast-neutron reactor simulator. Comparative analysis of the numerical and experimental data has shown that the developed mathematical model is correct and, therefore, it can be used for simulation of thermo-hydraulic processes proceeding in fast-neutron reactors with sodium coolant.

In case of vessel wall damage or contact of blood plasma with a foreign surface, the chain of chemical reactions called coagulation cascade is launched that leading to the formation of a fibrin clot. A key enzyme of the coagulation cascade is thrombin, which catalyzes formation of fibrin from fibrinogen. The distribution of thrombin concentration in blood plasma determines spatio-temporal dynamics of clot formation. Contact pathway of blood coagulation triggers the production of thrombin in response to the contact with a negatively charged surface. If the concentration of thrombin generated at this stage is large enough, further production of thrombin takes place due to positive feedback loops of the coagulation cascade. As a result, thrombin propagates in plasma cleaving fibrinogen that results in the clot formation. The concentration profile and the speed of propagation of thrombin are constant and do not depend on the type of the initial activator.

Such behavior of the coagulation system is well described by the traveling wave solutions in a system of “reaction – diffusion” equations on the concentration of blood factors involved in the coagulation cascade. In this study, we carried out detailed analysis of the mathematical model describing the main reaction of the intrinsic pathway of coagulation cascade.We formulate necessary and sufficient conditions of the existence of the traveling wave solutions. For the considered model the existence of such solutions is equivalent to the existence of the wave solutions in the simplified one-equation model describing the dynamics of thrombin concentration derived under the quasi-stationary approximation.

Simplified model also allows us to obtain analytical estimate of the thrombin propagation rate in the considered model. The speed of the traveling wave for one equation is estimated using the narrow reaction zone method and piecewise linear approximation. The resulting formulas give a good approximation of the velocity of propagation of thrombin in the simplified, as well as in the original model.

By numerical simulation methods the interaction processes of oscillating soliton (breather) with a 180-degree Neel domain wall in the framework of a (2 + 1)-dimensional supersymmetric O(3) nonlinear sigma model is studied. The purpose of this paper is to investigate nonlinear evolution and stability of a system of interacting localized dynamic and topological solutions. To construct the interaction models, were used a stationary breather and domain wall solutions, where obtained in the framework of the two-dimensional sine-Gordon equation by adding specially selected perturbations to the A3-field vector in the isotopic space of the Bloch sphere. In the absence of an external magnetic field, nonlinear sigma models have formal Lorentz invariance, which allows constructing, in particular, moving solutions and analyses the experimental data of the nonlinear dynamics of an interacting solitons system. In this paper, based on the obtained moving localized solutions, models for incident and head-on collisions of breathers with a domain wall are constructed, where, depending on the dynamic parameters of the system, are observed the collisions and reflections of solitons from each other, a long-range interactions and also the decay of an oscillating soliton into linear perturbation waves. In contrast to the breather solution that has the dynamics of the internal degree of freedom, the energy integral of a topologically stable soliton in the all experiments the preserved with high accuracy. For each type of interaction, the range of values of the velocity of the colliding dynamic and topological solitons is determined as a function of the rotation frequency of the A3-field vector in the isotopic space. Numerical models are constructed on the basis of methods of the theory of finite difference schemes, using the properties of stereographic projection, taking into account the group-theoretical features of constructions of the O(N) class of nonlinear sigma models of field theory. On the perimeter of the two-dimensional modeling area, specially developed boundary conditions are established that absorb linear perturbation waves radiated by interacting soliton fields. Thus, the simulation of the interaction processes of localized solutions in an infinite two-dimensional phase space is carried out. A software module has been developed that allows to carry out a complex analysis of the evolution of interacting solutions of nonlinear sigma models of field theory, taking into account it’s group properties in a two-dimensional pseudo-Euclidean space. The analysis of isospin dynamics, as well the energy density and energy integral of a system of interacting dynamic and topological solitons is carried out.