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Augmented data routing algorithms for satellite delay-tolerant networks. Development and validation
Computer Research and Modeling, 2022, v. 14, no. 4, pp. 983-993The problem of centralized planning for data transmission routes in delay tolerant networks is considered. The original problem is extended with additional requirements to nodes storage and communication process. First, it is assumed that the connection between the nodes of the graph is established using antennas. Second, it is assumed that each node has a storage of finite capacity. The existing works do not consider these requirements. It is assumed that we have in advance information about messages to be processed, information about the network configuration at specified time points taken with a certain time periods, information on time delays for the orientation of the antennas for data transmission and restrictions on the amount of data storage on each satellite of the grouping. Two wellknown algorithms — CGR and Earliest Delivery with All Queues are improved to satisfy the extended requirements. The obtained algorithms solve the optimal message routing problem separately for each message. The problem of validation of the algorithms under conditions of lack of test data is considered as well. Possible approaches to the validation based on qualitative conjectures are proposed and tested, and experiment results are described. A performance comparison of the two implementations of the problem solving algorithms is made. Two algorithms named RDTNAS-CG and RDTNAS-AQ have been developed based on the CGR and Earliest Delivery with All Queues algorithms, respectively. The original algorithms have been significantly expanded and an augmented implementation has been developed. Validation experiments were carried to check the minimum «quality» requirements for the correctness of the algorithms. Comparative analysis of the performance of the two algorithms showed that the RDTNAS-AQ algorithm is several orders of magnitude faster than RDTNAS-CG.
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Regularization and acceleration of Gauss – Newton method
Computer Research and Modeling, 2024, v. 16, no. 7, pp. 1829-1840We propose a family of Gauss –Newton methods for solving optimization problems and systems of nonlinear equations based on the ideas of using the upper estimate of the norm of the residual of the system of nonlinear equations and quadratic regularization. The paper presents a development of the «Three Squares Method» scheme with the addition of a momentum term to the update rule of the sought parameters in the problem to be solved. The resulting scheme has several remarkable properties. First, the paper algorithmically describes a whole parametric family of methods that minimize functionals of a special kind: compositions of the residual of a nonlinear equation and an unimodal functional. Such a functional, entirely consistent with the «gray box» paradigm in the problem description, combines a large number of solvable problems related to applications in machine learning, with the regression problems. Secondly, the obtained family of methods is described as a generalization of several forms of the Levenberg –Marquardt algorithm, allowing implementation in non-Euclidean spaces as well. The algorithm describing the parametric family of Gauss –Newton methods uses an iterative procedure that performs an inexact parametrized proximal mapping and shift using a momentum term. The paper contains a detailed analysis of the efficiency of the proposed family of Gauss – Newton methods; the derived estimates take into account the number of external iterations of the algorithm for solving the main problem, the accuracy and computational complexity of the local model representation and oracle computation. Sublinear and linear convergence conditions based on the Polak – Lojasiewicz inequality are derived for the family of methods. In both observed convergence regimes, the Lipschitz property of the residual of the nonlinear system of equations is locally assumed. In addition to the theoretical analysis of the scheme, the paper studies the issues of its practical implementation. In particular, in the experiments conducted for the suboptimal step, the schemes of effective calculation of the approximation of the best step are given, which makes it possible to improve the convergence of the method in practice in comparison with the original «Three Square Method». The proposed scheme combines several existing and frequently used in practice modifications of the Gauss –Newton method, in addition, the paper proposes a monotone momentum modification of the family of developed methods, which does not slow down the search for a solution in the worst case and demonstrates in practice an improvement in the convergence of the method.
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OpenCL realization of some many-body potentials
Computer Research and Modeling, 2015, v. 7, no. 3, pp. 549-558Views (last year): 4. Citations: 1 (RSCI).Modeling of carbon nanostructures by means of classical molecular dynamics requires a lot of computations. One of the ways to improve the performance of basic algorithms is to transform them for running on SIMD-type computing systems such as systems with dedicated GPU. In this work we describe the development of algorithms for computation of many-body interaction based on Tersoff and embedded-atom potentials by means of OpenCL technology. OpenCL standard provides universality and portability of the algorithms and can be successfully used for development of the software for heterogeneous computing systems. The performance of algorithms is evaluated on CPU and GPU hardware platforms. It is shown that concurrent memory writes is effective for Tersoff bond order potential. The same approach for embedded-atom potential is shown to be slower than algorithm without concurrent memory access. Performance evaluation shows a significant GPU acceleration of energy-force evaluation algorithms for many-body potentials in comparison to the corresponding serial implementations.
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3D molecular dynamic simulation of thermodynamic equilibrium problem for heated nickel
Computer Research and Modeling, 2015, v. 7, no. 3, pp. 573-579Views (last year): 2.This work is devoted to molecular dynamic modeling of the thermal impact processes on the metal sample consisting of nickel atoms. For the solution of this problem, a continuous mathematical model on the basis of the classical Newton mechanics equations has been used; a numerical method based on the Verlet scheme has been chosen; a parallel algorithm has been offered, and its realization within the MPI and OpenMP technologies has been executed. By means of the developed parallel program, the investigation of thermodynamic equilibrium of nickel atoms’ system under the conditions of heating a sample to desired temperature has been executed. In numerical experiments both optimum parameters of calculation procedure and physical parameters of analyzed process have been defined. The obtained numerical results are well corresponding to known theoretical and experimental data.
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An automated system for program parameters fine tuning in the cloud
Computer Research and Modeling, 2015, v. 7, no. 3, pp. 587-592The paper presents a software system aimed at finding best (in some sense) parameters of an algorithm. The system handles both discrete and continuous parameters and employs massive parallelism offered by public clouds. The paper presents an overview of the system, a method to measure algorithm's performance in the cloud and numerical results of system's use on several problem sets.
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Interactive graphical toolkit global computer simulations in marine service operational forecasts
Computer Research and Modeling, 2015, v. 7, no. 3, pp. 641-648Citations: 1 (RSCI).Efficiency and completeness of the numerical simulation in oceanography and hydrometeorology are entirely determined by algorithmic features of the construction of an interactive computer simulations in the scale of the oceans with adaptive coated closed seas and coastal waters refined mathematical models, with the possibility of specifying software parallelization calculations near the concrete — the protected areas of the sea coast. An important component of the research is continuous graphical visualization techniques in the course of calculations, including those undertaken in parallel processes with shared RAM or test points on the external media. The results of computational experiments are used in the description of hydrodynamic processes near the coast, which is important in keeping the organization of sea control services and forecasting marine hazards.
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Parallel representation of local elimination algorithm for accelerating the solving sparse discrete optimization problems
Computer Research and Modeling, 2015, v. 7, no. 3, pp. 699-705Views (last year): 1.The decomposition algorithms provide approaches to deal with NP-hardness in solving discrete optimization problems (DOPs). In this article one of the promising ways to exploit sparse matrices — local elimination algorithm in parallel interpretation (LEAP) are demonstrated. That is a graph-based structural decomposition algorithm, which allows to compute a solution in stages such that each of them uses results from previous stages. At the same time LEAP heavily depends on elimination ordering which actually provides solving stages. Also paper considers tree- and block-parallel for LEAP and required realization process of it comparison of a several heuristics for obtaining a better elimination order and shows how is related graph structure, elimination ordering and solving time.
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Pre-decomposition of discrete optimization problems to speed up the branch and bound method in a distributed computing environment
Computer Research and Modeling, 2015, v. 7, no. 3, pp. 719-725The paper presents an implementation of branch and bound algorithm employing coarse grained parallelism. The system is based on CBC (COIN-OR branch and cut) open-source MIP solver and inter-process communication capabilities of Erlang. Numerical results show noticeable speedup in comparison to single-threaded CBC instance.
Keywords: branch and bound algorithm, coarse grained parallelism.Views (last year): 2. Citations: 2 (RSCI). -
An implementation of a parallel global minimum search algorithm with an application to the ReaxFF molecular dynamic force field parameters optimization
Computer Research and Modeling, 2015, v. 7, no. 3, pp. 745-752Views (last year): 1. Citations: 1 (RSCI).Molecular dynamic methods that use ReaxFF force field allow one to obtain sufficiently good results in simulating large multicomponent chemically reactive systems. Here is represented an algorithm of searching optimal parameters of molecular-dynamic force field ReaxFF for arbitrary chemical systems and its implementation. The method is based on the multidimensional technique of global minimum search suggested by R.G. Strongin. It has good scalability useful for running on distributed parallel computers.
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Modeling of behavior of the option. The formulation of the problem
Computer Research and Modeling, 2015, v. 7, no. 3, pp. 759-766Views (last year): 2. Citations: 1 (RSCI).Object of research: The creation of algorithm for mass computations of options‘ price for formation of a riskless portfolio. The method is based on the generalization of the Black–Scholes method. The task is the modeling of behavior of all options and tools for their insurance. This task is characterized by large volume of realtime complex computations that should be executed concurrently The problem of the research: depending on conditions approaches to the solution should be various. There are three methods which can be used with different conditions: the finite difference method, the path-integral approach and methods which work in conditions of trade stop. Distributed computating in these three cases is organized differently and it is necessary to involve various approaches. In addition to complexity the mathematical formulation of the problem in literature is not quite correct. There is no complete description of boundary and initial conditions and also several hypotheses of the model do not correspond to real market. It is necessary to give mathematically correct formulation of the task, and to neutralize a difference between hypotheses of the model and their prototypes in the market. For this purpose it is necessary to expand standard formulation by additional methods and develop methods of realization for each of solution branches.
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